BAC Information

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BAC

Clone NameB6Ng01-121I07
Chromosome4 (Build37)
Map Location 106,831,295 - 106,990,395
singlet/doubletdoublet
Overlap gene2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2
Downstream geneLOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121I07.bB6Ng01-121I07.g
ACCDH925180DH925181
length1,1631,056
definitionDH925180|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I07, 5' end.DH925181|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,989,223 - 106,990,395)(106,831,295 - 106,832,357)
sequence
gaattctctctgcctccctagtgctgggattacaggcagcctgcacacct
gcccacgtgcttcaagcagttcacgcatcagcatggcaggggctttatcc
accgagtcatcttccaagcccaaggttttaaggctcctgggctatactgt
taaatcgtgtccaaaagaactttcctcattaacttcctcagcagcgatgc
agactgtctctgagcatcccaatgctttgattagctgtgcactaacagtt
aaaagatggtcacaacactgtcaaagggagccacatgaagggagacccac
ttaaatcatacatatttcaaaagcactactttgctagtgagaaggcacac
caggaaggggaggaacagagcgccactgggcaagcacgaggtcagagggg
ccagaaggaagatacggctcgctgcgctgatggggtcagactccttctga
ggaaaacacccaataagaatggccatgggtgctacacaaagggctgagaa
ggacccaggggcagagcaggaagcgtgtgcacgccggaagacacggaagg
caccatcagaagtgtatctcttctgacagtaacgttctctgtctctgcgt
cctggcctctctgaagccgtcttttacgtccatcttttcctagcacatga
cttctgccagaagccacctgaactccaccttctcgtctaccatcttcctc
aggacagccttccaggccaccccaaggaccacatgctcttccctgaagcc
gaagtccttaaccattgtatagcctcacgttcatcacggcctgcctcctt
tcaagccgccttgggccgacaacctctgctatgatctggaacatggacca
actttttgtttcttaaagaggaaaaaaattaaacaatcttcctcccgccg
cccagggggctctgcaaatgctgtcacaatacttgcacccccttgcactg
tgcaagcaagagctgaagaaagacaacttggaattgaaaaacagagcaaa
cgtcccaagctggctctctgtgaggctgcaagcccagtgtgtcagcaaac
gtgggaaggccatgagctacaaagacgagacagcgaaggcaggtgggcct
gatattcagggccttcactcagtgattggcgaagcaagtgacatcgagtt
gggggtgttaatt
gaattcattcacttttgtgattcccagaaactcacttccaatatgtattt
ctagtctaacagtctcatttgagctggacatttccattaaaatagtttta
aagaattcaaaatgcaggctgggtgtggtggcacacacctttaatttcag
tatttgggaggcagaggcaggaggatctccgtgaatttgaggccagcctt
tgtctacaaagtaaattgcaggacaccagtgctgttatacagagaaaccc
tgtctcaaaaaaatcaaaatgataaactcttaccagtaaatgaacaaaga
acacaaatacttgagagagagagagagagagagagagagagagaaagaga
gaagaaaagagaaaggaaaaggacaaatggctgacaagcctattacaaac
acttagtctacttagtaaatgaaaataagaatttatttctctgacctatc
tattttttggcctattggattactgagagtttaagaaagatgtaggcatg
caaatgaagacaacattcctaggatgtaagattcccacccacatggagac
aggaagcgcacagagcagtctagatgaaggccttgggtaggctgctcgag
gctgggctgcccttcctgaagaagcatcgttgctggggaaaatagaagca
gagctggaaggcaagcagagcatggagaatgccgccaactcctggccctt
ccctctcttggacaggcacattctgcactcaggttctgtagcagtgaggt
gtgaggcagcacacacaacagcacggccctgctggcacagagactgctca
gcacatagaaaataaagaggcaaataattaaataagtaattacaaaccaa
gatagagccgggagggaaaccagttaaaaatacagaagtagcagccggct
cggtgtcacttatgccaagagaaaggaaaataatcaacggtttcaaatca
caggtctggagatgagaaccgagacagacactggatcgacagaataaatc
actgtttctgagagagaagtgggagtgtgggagaagccctctgggggaga
gggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_106989223_106990395
seq2: B6Ng01-121I07.b_46_1208 (reverse)

seq1  AATTAACA-CCCCACCTTCCGATGTCACTTGCTTCGCAACTCACTGGGAG  49
      |||||||| ||||| ||  |||||||||||||||||| | |||||  |||
seq2  AATTAACACCCCCAACT--CGATGTCACTTGCTTCGCCAATCACT--GAG  46

seq1  TGAAGGCCTGGATAACCAGGGCCCACTGCCTCTGCTGGTCTCTGTCCTTT  99
      ||||||||  ||  | |||| ||  ||||||  ||| ||||| |||  ||
seq2  TGAAGGCCCTGAATATCAGGCCCACCTGCCTTCGCT-GTCTC-GTC--TT  92

seq1  TGTAGCTCATGGCCTTTCCCACGTTTGCCTGACACACTGGGCTTGCAGCC  149
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TGTAGCTCATGGCC-TTCCCACGTTTG-CTGACACACTGGGCTTGCAGCC  140

seq1  TCACAGAGAGCCAGCTTGGGACGTTTGCTCTGTTTTTCAATTCCAAGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAGCCAGCTTGGGACGTTTGCTCTGTTTTTCAATTCCAAGTTG  190

seq1  TCTTTCTTCAGCTCTTGCTTGCACAGTGCAAGGGGGTGCAAGTATTGTGG  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTCTTCAGCTCTTGCTTGCACAGTGCAAGGGGGTGCAAGTATTGT-G  239

seq1  ACAGCATTTGCAGAGCCCCCTGGGCGGCGGGAGGAAGATTGTTTAATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTTGCAGAGCCCCCTGGGCGGCGGGAGGAAGATTGTTTAATTTT  289

seq1  TTTCCTCTTTAAGAAACAAAAAGTTGGTCCATGTTCCAGATCATAGCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTTAAGAAACAAAAAGTTGGTCCATGTTCCAGATCATAGCAGA  339

seq1  GGTTGTCGGCCCAAGGCGGCTTGAAAGGAGGCAGGCCGTGATGAACGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCGGCCCAAGGCGGCTTGAAAGGAGGCAGGCCGTGATGAACGTGA  389

seq1  GGCTATACAATGGTTAAGGACTTCGGCTTCAGGGAAGAGCATGTGGTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAATGGTTAAGGACTTCGGCTTCAGGGAAGAGCATGTGGTCCT  439

seq1  TGGGGTGGCCTGGAAGGCTGTCCTGAGGAAGATGGTAGACGAGAAGGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGCCTGGAAGGCTGTCCTGAGGAAGATGGTAGACGAGAAGGTGG  489

seq1  AGTTCAGGTGGCTTCTGGCAGAAGTCATGTGCTAGGAAAAGATGGACGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGTGGCTTCTGGCAGAAGTCATGTGCTAGGAAAAGATGGACGTA  539

seq1  AAAGACGGCTTCAGAGAGGCCAGGACGCAGAGACAGAGAACGTTACTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGGCTTCAGAGAGGCCAGGACGCAGAGACAGAGAACGTTACTGTC  589

seq1  AGAAGAGATACACTTCTGATGGTGCCTTCCGTGTCTTCCGGCGTGCACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATACACTTCTGATGGTGCCTTCCGTGTCTTCCGGCGTGCACAC  639

seq1  GCTTCCTGCTCTGCCCCTGGGTCCTTCTCAGCCCTTTGTGTAGCACCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCTCTGCCCCTGGGTCCTTCTCAGCCCTTTGTGTAGCACCCAT  689

seq1  GGCCATTCTTATTGGGTGTTTTCCTCAGAAGGAGTCTGACCCCATCAGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCTTATTGGGTGTTTTCCTCAGAAGGAGTCTGACCCCATCAGCG  739

seq1  CAGCGAGCCGTATCTTCCTTCTGGCCCCTCTGACCTCGTGCTTGCCCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGCCGTATCTTCCTTCTGGCCCCTCTGACCTCGTGCTTGCCCAGT  789

seq1  GGCGCTCTGTTCCTCCCCTTCCTGGTGTGCCTTCTCACTAGCAAAGTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCTGTTCCTCCCCTTCCTGGTGTGCCTTCTCACTAGCAAAGTAGT  839

seq1  GCTTTTGAAATATGTATGATTTAAGTGGGTCTCCCTTCATGTGGCTCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAAATATGTATGATTTAAGTGGGTCTCCCTTCATGTGGCTCCCT  889

seq1  TTGACAGTGTTGTGACCATCTTTTAACTGTTAGTGCACAGCTAATCAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTGTTGTGACCATCTTTTAACTGTTAGTGCACAGCTAATCAAAG  939

seq1  CATTGGGATGCTCAGAGACAGTCTGCATCGCTGCTGAGGAAGTTAATGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGATGCTCAGAGACAGTCTGCATCGCTGCTGAGGAAGTTAATGAG  989

seq1  GAAAGTTCTTTTGGACACGATTTAACAGTATAGCCCAGGAGCCTTAAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCTTTTGGACACGATTTAACAGTATAGCCCAGGAGCCTTAAAAC  1039

seq1  CTTGGGCTTGGAAGATGACTCGGTGGATAAAGCCCCTGCCATGCTGATGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTTGGAAGATGACTCGGTGGATAAAGCCCCTGCCATGCTGATGC  1089

seq1  GTGAACTGCTTGAAGCACGTGGGCAGGTGTGCAGGCTGCCTGTAATCCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGCTTGAAGCACGTGGGCAGGTGTGCAGGCTGCCTGTAATCCCA  1139

seq1  GCACTAGGGAGGCAGAGAGAATTC  1173
      ||||||||||||||||||||||||
seq2  GCACTAGGGAGGCAGAGAGAATTC  1163

seq1: chr4_106831295_106832357
seq2: B6Ng01-121I07.g_67_1122

seq1  GAATTCATTCACTTTTGTGATTCCCAGAAACTCACTTCCAATATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTTTTGTGATTCCCAGAAACTCACTTCCAATATGTATTT  50

seq1  CTAGTCTAACAGTCTCATTTGAGCTGGACATTTCCATTAAAATAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTAACAGTCTCATTTGAGCTGGACATTTCCATTAAAATAGTTTTA  100

seq1  AAGAATTCAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAATTTCAG  150

seq1  TATTTGGGAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCCAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCCAGCCTT  200

seq1  TGTCTACAAAGTAAATTGCAGGACACCAGTGCTGTTATACAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAAAGTAAATTGCAGGACACCAGTGCTGTTATACAGAGAAACCC  250

seq1  TGTCTCAAAAAAATCAAAATGATAAACTCTTACCAGTAAATGAACAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAAATCAAAATGATAAACTCTTACCAGTAAATGAACAAAGA  300

seq1  ACACAAATACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  350

seq1  GAAGAAAAGAGAAAGGAAAAGGACAAATGGCTGACAAGCCTATTACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAGAAAGGAAAAGGACAAATGGCTGACAAGCCTATTACAAAC  400

seq1  ACTTAGTCTACTTAGTAAATGAAAATAAGAATTTATTTCTCTGACCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCTACTTAGTAAATGAAAATAAGAATTTATTTCTCTGACCTATC  450

seq1  TATTTTTTGGCCTATTGGATTACTGAGAGTTTAAGAAAGATGTAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGGCCTATTGGATTACTGAGAGTTTAAGAAAGATGTAGGCATG  500

seq1  CAAATGAAGACAACATTCCTAGGATGTAAGATTCCCACCCACATGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAGACAACATTCCTAGGATGTAAGATTCCCACCCACATGGAGAC  550

seq1  AGGAAGCGCACAGAGCAGTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCGCACAGAGCAGTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAG  600

seq1  GCTGGGCTGCCCTTCCTGAAGAAGCATCGTTGCTGGGGAAAATAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGCCCTTCCTGAAGAAGCATCGTTGCTGGGGAAAATAGAAGCA  650

seq1  GAGCTGGAAGGCAAGCAGAGCATGGAGAATGCCGCCAACTCCTGGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAAGGCAAGCAGAGCATGGAGAATGCCGCCAACTCCTGGCCCTT  700

seq1  CCCTCTCTTGGACAGGCACATTCTGCACTCAGGTTCTGTAGCAGTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTGGACAGGCACATTCTGCACTCAGGTTCTGTAGCAGTGAGGT  750

seq1  GTGAGGCAGCACACACAACAGCACGGCCCTGCTGGCACAGAGACTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGCACACACAACAGCACGGCCCTGCTGGCACAGAGACTGCTCA  800

seq1  GCACATAGAAAATAAAGAGGCAAATAATTAAATAAGTAATTACAAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGAAAATAAAGAGGCAAATAATTAAATAAGTAATTACAAACCAA  850

seq1  GATAAGAGCCGGGAGGGAAACCAGTTAAAAATACAGAAGTAGCAGCCGGC  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-AGAGCCGGGAGGGAAACCAGTTAAAAATACAGAAGTAGCAGCCGGC  899

seq1  TCGGTGTCACTTATGCCAAGAGAAAGGAAAATAATCAACGGTTTCAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTCACTTATGCCAAGAGAAAGGAAAATAATCAACGGTTTCAAATC  949

seq1  ACAGGTCTGGAAGATGAGAACCGAGACAAGACACTGGATTCGGACAGAAT  1000
      |||||||||| |||||||||||||||| |||||||||||   ||||||||
seq2  ACAGGTCTGG-AGATGAGAACCGAGAC-AGACACTGGAT--CGACAGAAT  995

seq1  AAAATCACTGTGTCCTGAGAGAGAAGTGAGAGTGTGGGAGAAGCCCTCTG  1050
       |||||||||| | |||||||||||||| |||||||||||||||||||||
seq2  -AAATCACTGT-TTCTGAGAGAGAAGTGGGAGTGTGGGAGAAGCCCTCTG  1043

seq1  GGAGAGAGAGAGA  1063
      || ||||| ||||
seq2  GGGGAGAGGGAGA  1056