BAC Information

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BAC

Clone NameB6Ng01-122A09
Chromosome4 (Build37)
Map Location 52,456,888 - 52,457,992
singlet/doubletsinglet
Overlap geneSmc2
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724
Downstream geneLOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122A09.bB6Ng01-122A09.g
ACCDH925558DH925559
length1,2241,098
definitionDH925558|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A09, 5' end.DH925559|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgctt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtcg
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcga
attcttctacatgataacaaccacttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccgtgagaagagtttttgctatcctaggtttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctctagattgcttttggcaagatagccatttt
tacaatgttgatcatgccaatccatgagcatgggagatccttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttccttagttagagtcacgccgagatatttatattattt
gtgactattgagaaggtgtgttccctaatttgtttctcagcctgtttatc
tttgtatagaagaaggcatgactgtttgagttattttatattccacctac
ttcacggagctgttatcagttaggagtctctgtgaattttgggtcactat
aataccatcaatcatctgcaaagtgatattttgaacttccttcaattggt
atccttgacttcttgtggaatgctggctatctcagactatgtgtgtaagt
agggagatatgggcgcagccccgt
gaattctgccttgatctagccaaataaatataatcagaagattgataaaa
taaaggagaaaacccatttacaaactaagatgacaagtgaaatttaacag
aatttataaaattagtataaattagaattagttttacacttatagttaat
tattatacaatgaattatatagttaacataattatataaattccatttct
aaaaatcgaagtaataaaattagtaaaaacaaaactgagaagatgaaaac
attgataaaaaaaaaaaaattgctgggcagtggtggcgcatgcctttaat
cccagcacttgggaggcagaggcaggcagatttctgagttcaaggccagc
ctggtctacagaatgggttccaggacagccagggctacacagagggtttc
tcaaaacaacaacaacaacaacaaaaaaaaacaaaaacaaaaaacccaaa
aaaaaacaaaaaagaaaaaaattacggaccaatgaaaggcccttaataac
tttgaaagaaatagtagtgatcaagctaaataatgacacatgtcccgtgg
tttcaagtcctctgatgcacacacgctgcagtgaaagcctgagagccaga
ggagtgtctaaatgaagcaacactagttttgttcatatctgttttcacta
gccctttttgtcactctacatttgaggccatataactcaaagaaaattgt
atgtgtgtgaggggaggcaacagagagggtgctcatacttggtgtgatta
ggcaagtgaaggaactggaaataagttcagtgagagccctggtagggttc
cacttagaaaatatttagacctgcaaacaacttaaatattgaaatattaa
aaaaaacagatttcatcttggaagtttcaagtgaaccaagactaactgca
taaaactttaagttcacagacttctgctgaatttagattaggttttcatt
tgggcccagaccctgagtccattgagagctccctcagatcactcagattt
tctctactttctgggacccaagctttactatacccttctgattcttctct
agcatctgatgatgtatacggtagccctggctaactgtacagaacgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52456888_52457992
seq2: B6Ng01-122A09.g_67_1164 (reverse)

seq1  GGCG-TCTGTTACAGTTAGCCAGGGCTACCGTATACATCATCAGGATGCT  49
      |||| |||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GGCGTTCTG-TACAGTTAGCCAGGGCTACCGTATACATCATCA-GATGCT  48

seq1  AGAGAAG-ATCAGAAGGGGTATAGTAAAAGCTTGGGTTCCCAGAAAGTAG  98
      ||||||| ||||||| ||||||||| |||||||||| |||||||||||||
seq2  AGAGAAGAATCAGAA-GGGTATAGT-AAAGCTTGGG-TCCCAGAAAGTAG  95

seq1  AGAAAATTCTGAGTGATCTGAGGGAAGCTCTCAATGGACTCAGGGGTCTG  148
      |||||| ||||||||||||||||| ||||||||||||||||| |||||||
seq2  AGAAAA-TCTGAGTGATCTGAGGG-AGCTCTCAATGGACTCA-GGGTCTG  142

seq1  GGCCCAAATGAAAACCTAATCTTAAATTCAGCAGAAGTCTGTGAACTTAA  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCCAAATGAAAACCTAATC-TAAATTCAGCAGAAGTCTGTGAACTTAA  191

seq1  AGTTTTATGCAGTTAGTCTTGGTTCACTTGAAACTTCCAAGATGAAATCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGCAGTTAGTCTTGGTTCACTTGAAACTTCCAAGATGAAATCT  241

seq1  GTTTTTTTTAATATTTCAATATTTAAGTTGTTTGCAGGTCTAAATATTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTAATATTTCAATATTTAAGTTGTTTGCAGGTCTAAATATTTT  291

seq1  CTAAGTGGAACCCTACCAGGGCTCTCACTGAACTTATTTCCAGTTCCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGGAACCCTACCAGGGCTCTCACTGAACTTATTTCCAGTTCCTTC  341

seq1  ACTTGCCTAATCACACCAAGTATGAGCACCCTCTCTGTTGCCTCCCCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTAATCACACCAAGTATGAGCACCCTCTCTGTTGCCTCCCCTCA  391

seq1  CACACATACAATTTTCTTTGAGTTATATGGCCTCAAATGTAGAGTGACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACAATTTTCTTTGAGTTATATGGCCTCAAATGTAGAGTGACAA  441

seq1  AAAGGGCTAGTGAAAACAGATATGAACAAAACTAGTGTTGCTTCATTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTAGTGAAAACAGATATGAACAAAACTAGTGTTGCTTCATTTAG  491

seq1  ACACTCCTCTGGCTCTCAGGCTTTCACTGCAGCGTGTGTGCATCAGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCTGGCTCTCAGGCTTTCACTGCAGCGTGTGTGCATCAGAGGA  541

seq1  CTTGAAACCACGGGACATGTGTCATTATTTAGCTTGATCACTACTATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACCACGGGACATGTGTCATTATTTAGCTTGATCACTACTATTTC  591

seq1  TTTCAAAGTTATTAAGGGCCTTTCATTGGTCCGTAATTTTTTTCTTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTTATTAAGGGCCTTTCATTGGTCCGTAATTTTTTTCTTTTTT  641

seq1  GTTTTTTTTTGGGTTTTTTGTTTTTGTTTTTTTTTGTTGTTGTTGTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTGGGTTTTTTGTTTTTGTTTTTTTTTGTTGTTGTTGTTGTT  691

seq1  GTTTTGAGAAACCCTCTGTGTAGCCCTGGCTGTCCTGGAACCCATTCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGAAACCCTCTGTGTAGCCCTGGCTGTCCTGGAACCCATTCTGT  741

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAG  791

seq1  TGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGCAATTTTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGCAATTTTTTTTTTTT  841

seq1  TATCAATGTTTTCATCTTCTCAGTTTTGTTTTTACTAATTTTATTACTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGTTTTCATCTTCTCAGTTTTGTTTTTACTAATTTTATTACTTC  891

seq1  GATTTTTAGAAATGGAATTTATATAATTATGTTAACTATATAATTCATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAGAAATGGAATTTATATAATTATGTTAACTATATAATTCATTG  941

seq1  TATAATAATTAACTATAAGTGTAAAACTAATTCTAATTTATACTAATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATTAACTATAAGTGTAAAACTAATTCTAATTTATACTAATTTT  991

seq1  ATAAATTCTGTTAAATTTCACTTGTCATCTTAGTTTGTAAATGGGTTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTGTTAAATTTCACTTGTCATCTTAGTTTGTAAATGGGTTTTC  1041

seq1  TCCTTTATTTTATCAATCTTCTGATTATATTTATTTGGCTAGATCAAGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTTTATCAATCTTCTGATTATATTTATTTGGCTAGATCAAGGC  1091

seq1  AGAATTC  1105
      |||||||
seq2  AGAATTC  1098