BAC Information

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BAC

Clone NameB6Ng01-122B06
Chromosome4 (Build37)
Map Location 67,129,671 - 67,130,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379
Downstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B06.bB6Ng01-122B06.g
ACCDH925600DH925601
length6851,055
definitionDH925600|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B06, 5' end.DH925601|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggatgctccacagatgaaggtgacagtttaaatagagtgacat
agaaaggattagggagttgaagtttgaaaaaaaattgagagacgtggcag
cctgtcacatgattattgatatatgacaatactaaacagaaggaagagtc
atgggttttaaattaggtttattagtgtcagtcttgagaaacctctcttt
aagtggtgagtcaaggtattccaaatggctccaaaatacagactgttgat
gttacccttgggtgcctctcaggttaaaggtaagatgccattctgatgat
accacacatgtaggacaattattaaagtgggatataacttaaatttctcc
tttctgtgccctagctttcatggttccagaaaatgtcattcaagctgcaa
ataaagaaacaatcaatgcccttacccaaccataccaaaacccagcatga
aaagcttagtgagtagtgtggagtggtgggttgtgcacagaaagcctagt
tccaggtcgagcaaatgtctggatccccggagcctatcccaaacttggtt
tgcacaaaagtaggcctgctctagtccctgctgatggagttgcctgctgt
ggtccataaaaaagcttcctggccaagagtccttaaaaccattggggagt
ccctctgcctggtttttctattggtaagggtttct

gaattctctggagagtaatatacaatggatatttcctctataatcttaag
tacttaccacctatgacataatgagcacataactcaataaatggatggat
caataaacctgcttggattaaaattggaggggctttgtcttaatgaagta
aaaaaaaaaaaaaaagctacttaatttttctaggattccttcaattcctt
ttttatgcatctgtacccaaccccaaaatttattatcttcaaccatcctt
cctccttctctcgatgtgacccttgatatttaaataacctaatctacttt
attaatttacgtatcctttaataatgatttggcacaaaacaatgttttgc
ttccctaatgttagcactcatcacaatgtagatatattgagtaaactaac
tgctatttgttttaaagttatacagattttgaatcaatcacgaatatatg
cagagcattacattgggtgacatgtagagaggatgaaggtaggaattttg
cttatacttagagctatgacaacactgagtttggaacagatacaaaacag
ttactcatcaaacagagtacaagtagactttggaaaatatctactgcatt
aaacttccacagcatccatctgagttcaaattctactttgatttacagaa
tgtacaatactatgcacatcagttaactattgaacccttatctcattagc
tgtaatatgggaaccaatttcaatacctcttaaagatttttaggtacttc
aattatatttcccttatcaagtgattagtccagtgtctggcatacagttt
gttttcaaaagccctaaaatttattattgtcattagtataaataagacac
cattagatgataaaatatgaagtaattgactgtgcaaaatcatgtggtta
atgtaatatggtaaataaattaatatctgctctggtactagtaggaacat
gtgctggtgtttctcctactttagacccagctatcaaaaagtgttcactg
tagcaggaaatcataaatgtgtcataggatctacatatttcgatctctgg
atgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67129671_67130739
seq2: B6Ng01-122B06.g_68_1122

seq1  GAATTCTCTGGAGAGTAATATACAATGGATATTTCCTCTATAATCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGAGTAATATACAATGGATATTTCCTCTATAATCTTAAG  50

seq1  TACTTACCACCTATGACATAATGAGCACATAACTCAATAAATGGATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCACCTATGACATAATGAGCACATAACTCAATAAATGGATGGAT  100

seq1  CAATAAACCTGCTTGGATTAAAATTGGAGGGGCTTTGTCTTAATGAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACCTGCTTGGATTAAAATTGGAGGGGCTTTGTCTTAATGAAGTA  150

seq1  AAAAAAAAAAAAAAAGCTACTTAATTTTTCTAGGATTCCTTCAATTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCTACTTAATTTTTCTAGGATTCCTTCAATTCCTT  200

seq1  TTTTATGCATCTGTACCCAACCCCAAAATTTATTATCTTCAACCATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCATCTGTACCCAACCCCAAAATTTATTATCTTCAACCATCCTT  250

seq1  CCTCCTTCTCTCGATGTGACCCTTGATATTTAAATAACCTAATCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCTCGATGTGACCCTTGATATTTAAATAACCTAATCTACTTT  300

seq1  ATTAATTTACGTATCCTTTAATAATGATTTGGCACAAAACAATGTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTACGTATCCTTTAATAATGATTTGGCACAAAACAATGTTTTGC  350

seq1  TTCCCTAATGTTAGCACTCATCACAATGTAGATATATTGAGTAAACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATGTTAGCACTCATCACAATGTAGATATATTGAGTAAACTAAC  400

seq1  TGCTATTTGTTTTAAAGTTATACAGATTTTGAATCAATCACGAATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTGTTTTAAAGTTATACAGATTTTGAATCAATCACGAATATATG  450

seq1  CAGAGCATTACATTGGGTGACATGTAGAGAGGATGAAGGTAGGAATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATTACATTGGGTGACATGTAGAGAGGATGAAGGTAGGAATTTTG  500

seq1  CTTATACTTAGAGCTATGACAACACTGAGTTTGGAACAGATACAAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTTAGAGCTATGACAACACTGAGTTTGGAACAGATACAAAACAG  550

seq1  TTACTCATCAAACAGAGTACAAGTAGACTTTGGAAAATATCTACTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCAAACAGAGTACAAGTAGACTTTGGAAAATATCTACTGCATT  600

seq1  AAACTTCCACAGCATCCATCTGAGTTCAAATTCTACTTTGATTTACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCACAGCATCCATCTGAGTTCAAATTCTACTTTGATTTACAGAA  650

seq1  TGTACAATACTATGCACATCAGTTAACTATTGAACCCTTATCTCATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATACTATGCACATCAGTTAACTATTGAACCCTTATCTCATTAGC  700

seq1  TGTAATATGGGAACCAATTTCAATACCTCTTAAAGATTTTTAGGTACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGGGAACCAATTTCAATACCTCTTAAAGATTTTTAGGTACTTC  750

seq1  AATTATATTTCCCTTATCAAGTGATTAGTCCAGTGTCTGGCATACAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTTCCCTTATCAAGTGATTAGTCCAGTGTCTGGCATACAGTTT  800

seq1  GTTTTCAAAAAGCCCTAAAATTTATTATTGTCATTAGTATAAATAAGACA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTC-AAAAGCCCTAAAATTTATTATTGTCATTAGTATAAATAAGACA  849

seq1  CCATTAGATGATAAAATATGAAGTAATTGACTGTGCAAAATCATGT-GTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCATTAGATGATAAAATATGAAGTAATTGACTGTGCAAAATCATGTGGTT  899

seq1  AATGTAATTATGGTAAATTAAATTAATATCTGCTTCTGTTACTAGTTAGG  949
      ||||||| ||||||||| ||||||||||||||| |||| |||||| ||||
seq2  AATGTAA-TATGGTAAA-TAAATTAATATCTGC-TCTGGTACTAG-TAGG  945

seq1  AACAATGTGCTTGTGTTTCTCCTACTTTAAGACCCAGCTATCAAAAAAGA  999
      ||| ||||||| |||||||||||||||| ||||||||||||||||||   
seq2  AAC-ATGTGCTGGTGTTTCTCCTACTTT-AGACCCAGCTATCAAAAA---  990

seq1  TGT-TTCACTGTAAGCAGGGAAATCAATAAAATGTGTCATAGATCCTACA  1048
       || |||||||| |||| ||||||||   |||||||||||||   |||||
seq2  -GTGTTCACTGT-AGCA-GGAAATCA--TAAATGTGTCATAGGATCTACA  1035

seq1  TATTTTCGAATCTCT-GATGTA  1069
      || ||||| |||||| ||||||
seq2  TA-TTTCG-ATCTCTGGATGTA  1055


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