BAC Information

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BAC

Clone NameB6Ng01-122H06
Chromosome4 (Build37)
Map Location 133,976,602 - 134,038,679
singlet/doubletdoublet
Overlap genePafah2, Stmn1
Upstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166
Downstream genePaqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H06.bB6Ng01-122H06.g
ACCDH925871DH925872
length678661
definitionDH925871|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H06, 5' end.DH925872|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,976,602 - 133,977,277)(134,038,031 - 134,038,679)
sequence
gaattcaggcaggcctgaaacctccgtgacctgtgcatgccccactcaag
ccaagcagcacacgtgcaccagtgcctgtgtcgggaagacacactaactg
ctcgtcatgtaccctgggaaccagctaggcagctgaaccataggccatgc
caagcccctcagtgccagaaggctgcaagcagtcgcttcgggggcttctg
cccttccccaccctggcccagcccctcctctttcatttttgacttcatag
cgttggagggacaggactgcagtcacttgtagtctgtagagaaggcacac
aaaggggacttaactacaggcaatatatcctatggatatgatgacacatg
ccattagtcccagcactcgggaggcagaggcaggtagatcgtgagttcaa
ggccaacctggtctacagagtgagtttcaggacaagccaatgctacatag
tgagactctgtctcaacctccccctaccccaaattttttagatgtattaa
ttatattattttatgcatatgagtttttcctgcatgtatatgtctgctgt
ccatggaggccatgagagggtgttgcatgtgtaacagtccttgactgtcc
tggaactcactttgtagaccaagctggtctctaaactcacagagatctgc
cagcctctgcctcccgagtgcaggtgtt
gaattccagtcaacagattcccaatgcctctcacgccctgagctaacaac
ccgtagacctgactcatgttcccatgtcccacagccagctttgcctatca
ctgatgcgtgtggcaattgctttcatttcgatgaaccctggagcgggaga
cctggctttacaggatcaggactgcccgtgggctataggctgtacagggc
aaaggcgaagccaggggttagtgtgggaggctgctgtagccaccctggta
gctagcaacaatgggggccagcaggggagcagaggaggaagaggtaaggg
gtgctggtttgtgtcctagaacctggatgacttgttcttcgactgtctcc
tctgccccgtggaacacatgccaggcactccataaacaccagtgctctgt
gcttcattccttctgactggtcttcgtggaatacccacacagctccagcc
agccacacccactcctgtcctctgtggttccccgaccttacccaacatcc
ccaccatctcctggatggcggcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttctgcatc
ttcgtcttctattcttcttctactttttttttcttcttcacattctcctt
ctccttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133976602_133977277
seq2: B6Ng01-122H06.b_48_725

seq1  GAATTCAGGCAGGCCTGAAACCTCCGTGACCTGTGCATGCCCCACTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGGCCTGAAACCTCCGTGACCTGTGCATGCCCCACTCAAG  50

seq1  CCAAGCAGCACACGTGCACCAGTGCCTGTGTCGGGAAGACACACTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGCACACGTGCACCAGTGCCTGTGTCGGGAAGACACACTAACTG  100

seq1  CTCGTCATGTACCCTGGGAACCAGCTAGGCAGCTGAACCATAGGCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCATGTACCCTGGGAACCAGCTAGGCAGCTGAACCATAGGCCATGC  150

seq1  CAAGCCCCTCAGTGCCAGAAGGCTGCAAGCAGTCGCTTCGGGGGCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTCAGTGCCAGAAGGCTGCAAGCAGTCGCTTCGGGGGCTTCTG  200

seq1  CCCTTCCCCACCCTGGCCCAGCCCCTCCTCTTTCATTTTTGACTTCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCACCCTGGCCCAGCCCCTCCTCTTTCATTTTTGACTTCATAG  250

seq1  CGTTGGAGGGACAGGACTGCAGTCACTTGTAGTCTGTAGAGAAGGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGAGGGACAGGACTGCAGTCACTTGTAGTCTGTAGAGAAGGCACAC  300

seq1  AAAGGGGACTTAACTACAGGCAATATATCCTATGGATATGATGACACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGACTTAACTACAGGCAATATATCCTATGGATATGATGACACATG  350

seq1  CCATTAGTCCCAGCACTCGGGAGGCAGAGGCAGGTAGATCGTGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTCCCAGCACTCGGGAGGCAGAGGCAGGTAGATCGTGAGTTCAA  400

seq1  GGCCAACCTGGTCTACAGAGTGAGTTTCAGGACAAGCCAATGCTACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGGTCTACAGAGTGAGTTTCAGGACAAGCCAATGCTACATAG  450

seq1  TGAGACTCTGTCTCAACCTCCCCCTACCCCAAATTTTTTAGATGTATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCTGTCTCAACCTCCCCCTACCCCAAATTTTTTAGATGTATTAA  500

seq1  TTATATTATTTTATGCATATGAGTTTTTCCTGCATGTATATGTCTGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATTTTATGCATATGAGTTTTTCCTGCATGTATATGTCTGCTGT  550

seq1  CCATGGAGGCCATGAGAGGGTGTTGCATGTGTAACAGTCC-TGACTGTCC  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCATGGAGGCCATGAGAGGGTGTTGCATGTGTAACAGTCCTTGACTGTCC  600

seq1  TGGAACTCACTTTGTAGACCAAGCTGGTCTCT-AACTCACAGAGATCTGC  648
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGAACTCACTTTGTAGACCAAGCTGGTCTCTAAACTCACAGAGATCTGC  650

seq1  CAGCCTCTGCCTCCCGAGTGCAGGTGTT  676
      ||||||||||||||||||||||||||||
seq2  CAGCCTCTGCCTCCCGAGTGCAGGTGTT  678

seq1: chr4_134038031_134038679
seq2: B6Ng01-122H06.g_68_728 (reverse)

seq1  AGGAGAAGGAGAAGGAGAA---GAAGAAG-------AAGAAGAAGAAGA-  39
      | |||||||||||||||||   |||||||       ||| ||||||||| 
seq2  AAGAGAAGGAGAAGGAGAATGTGAAGAAGAAAAAAAAAGTAGAAGAAGAA  50

seq1  -AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  88
       |||||| ||||| | ||||||||||||||||||||||||||||||||||
seq2  TAGAAGACGAAGATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  100

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGCCATCCA  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGCCATCCA  150

seq1  GGAGATGGTGGGGATGTTGGGTAAGGTCGGGGAACCACAGAGGACAGGAG  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTGGGGATGTTGGGTAAGGTCGGGGAACCACAGAGGACAGGAG  200

seq1  TGGGTGTGGCTGGCTGGAGCTGTGTGGGTATTCCACGAAGACCAGTCAGA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGCTGGCTGGAGCTGTGTGGGTATTCCACGAAGACCAGTCAGA  250

seq1  AGGAATGAAGCACAGAGCACTGGTGTTTATGGAGTGCCTGGCATGTGTTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAGCACAGAGCACTGGTGTTTATGGAGTGCCTGGCATGTGTTC  300

seq1  CACGGGGCAGAGGAGACAGTCGAAGAACAAGTCATCCAGGTTCTAGGACA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGCAGAGGAGACAGTCGAAGAACAAGTCATCCAGGTTCTAGGACA  350

seq1  CAAACCAGCACCCCTTACCTCTTCCTCCTCTGCTCCCCTGCTGGCCCCCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGCACCCCTTACCTCTTCCTCCTCTGCTCCCCTGCTGGCCCCCA  400

seq1  TTGTTGCTAGCTACCAGGGTGGCTACAGCAGCCTCCCACACTAACCCCTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTAGCTACCAGGGTGGCTACAGCAGCCTCCCACACTAACCCCTG  450

seq1  GCTTCGCCTTTGCCCTGTACAGCCTATAGCCCACGGGCAGTCCTGATCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGCCTTTGCCCTGTACAGCCTATAGCCCACGGGCAGTCCTGATCCT  500

seq1  GTAAAGCCAGGTCTCCCGCTCCAGGGTTCATCGAAATGAAAGCAATTGCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCAGGTCTCCCGCTCCAGGGTTCATCGAAATGAAAGCAATTGCC  550

seq1  ACACGCATCAGTGATAGGCAAAGCTGGCTGTGGGACATGGGAACATGAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATCAGTGATAGGCAAAGCTGGCTGTGGGACATGGGAACATGAGT  600

seq1  CAGGTCTACGGGTTGTTAGCTCAGGGCGTGAGAGGCATTGGGAATCTGTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTACGGGTTGTTAGCTCAGGGCGTGAGAGGCATTGGGAATCTGTT  650

seq1  GACTGGAATTC  649
      |||||||||||
seq2  GACTGGAATTC  661