BAC Information

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BAC

Clone NameB6Ng01-122K02
Chromosome4 (Build37)
Map Location 111,919,371 - 112,064,083
singlet/doubletdoublet
Overlap geneA430090E18Rik, A030013N09Rik
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
Downstream geneLOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122K02.bB6Ng01-122K02.g
ACCDH926006DH926007
length1,2451,034
definitionDH926006|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K02, 5' end.DH926007|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,919,371 - 111,920,506)(112,063,038 - 112,064,083)
sequence
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgaattaagataggtaaagatcctttccaaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaaacctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatctttgaggcttttacccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcgattcac
attcttctacatgatagcagccagttgtgctagcaccatttgttgaaaat
gctgcctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccaaagttcatggattttaaagagatggtccatctgttagaacaactg
ctagtctttcagaaaacatggtttcaattttccaacagacacaagatagc
tcaaaaccatctgtagactgctagacagagacaaggtaaactccctcatt
gtgaaaaaaaaaaacaaaaaacaaaaaatcactaacaaagctctgaagat
ggacagaattctaccagatatcctcttttgttctgtgtaaaggtgtcaca
cacatcctcttttgttctgtgtaaaggtgtcacacacacacacacacaca
cacacacacacacacacacaccacacctgtacaaatatgatttctcttta
actattggatttccttggtccttctgttcttcagaatggcagtcctgatt
cctcagctttgagaactgtcttttgtaaacttctaatgtggttctcaatg
agttgtaaatgctacatttatcatatgatttgtctttttccatgatcaga
ccccaaattctgatatttattctgtagtttataatgtcatacatctacca
ttaccagtaacatagaaggaaaaagtcattgttcaaccttgataagtaaa
gctaattaatggttttccctcctagaaagaagtaatcgcctctttgcact
tcataatatgttgccttgcaaactacttaccacctacacctgacgtgtaa
acaaggttcactagactgtggactataaaggattcctcctttatc
gaattctttcagagtattccttactgtgtgagtgaaggcagtttcttttt
cttttagctagctcagagtttcacagaagcccttctctgtggatcctaca
acctttaggcacttaagaatggagacagggtcccacagcatccaaatcat
gttttcaggctgattatgtgctacacagttgtgaacaaaagggagaagat
atttattatttgatattgtttttaagtctgttgtattttcagactaaatg
acgataatcttactttcaccaaattctaagttgtatcttactaacgctaa
ccctaaaaatatttcttatgaggctttagccctgacataacttaaataaa
caaatggatatagcatcaagaccttcaagacaatgcctgtattcaacatt
tcttttcttgtttcaatgaattccacaagacttcctaacttttgctactg
actctttttcagctttgtatagtaaaatgggagtttgctgtttgcttatc
tgggagtgcctactgttagttttgtatattgccttccttcctatctacgt
gagtttcagaagtagaggtgagtggaactagaatgaaatccgacatttcc
ctctcctctgtccagtgccttctcattttggaactatttagctgaatagc
ctttgtcacagcagtaacagtcatggtttcagtaacatcctagtggattc
aagtgctgtccttggaatgacatatttttcaaagttttagtcttctatca
tgactacttatatttttatactcacagtcacagttgtttatgtaacaatg
aaatgatttatttctccaggtctggtcttcattgaatcaactacaggctt
ctacaagcataattttctgatggcatatatcatttccaccaaaccaataa
tttataaacataaactacttttggtttagatattctttatgaaattaaac
aaaaagtacattttttctcatttgattatcctttcatttctagacactaa
aagctgattttgatctctttggttttatacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111919371_111920506
seq2: B6Ng01-122K02.b_161_1286

seq1  GTAAAGATCCTTTCCAAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCCTTTCCAAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGT  50

seq1  GTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAA  100

seq1  ACCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  150

seq1  CCTGTGCCCATATCTTTGAGGCTTTTACCCACTTTCTCCTCTATAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCATATCTTTGAGGCTTTTACCCACTTTCTCCTCTATAAGTTT  200

seq1  CAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCT  250

seq1  TAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTACATGATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTACATGATAGC  300

seq1  AGCCAGTTGTGCTAGCACCATTTGTTGAAAATGCTGCCTTTCTTCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTGTGCTAGCACCATTTGTTGAAAATGCTGCCTTTCTTCCACTG  350

seq1  GATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAAAGTTCATGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAAAGTTCATGGATT  400

seq1  TTAAAGAGATGGTCCATCTGTTAGAACAACTGCTAGTCTTTCAGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGATGGTCCATCTGTTAGAACAACTGCTAGTCTTTCAGAAAACA  450

seq1  TGGTTTCAATTTTCCAACAGACACAAGATAGCTCAAAACCATCTGTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAATTTTCCAACAGACACAAGATAGCTCAAAACCATCTGTAGAC  500

seq1  TGCTAGACAGAGACAAGGTAAACTCCCTCATTGTGAAAAAAAAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACAGAGACAAGGTAAACTCCCTCATTGTGAAAAAAAAAAACAAA  550

seq1  AAACAAAAAATCACTAACAAAGCTCTGAAGATGGACAGAATTCTACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAATCACTAACAAAGCTCTGAAGATGGACAGAATTCTACCAGA  600

seq1  TATCCTCTTTTGTTCTGTGTAAAGGTGTCACACACATCCTCTTTTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTTTGTTCTGTGTAAAGGTGTCACACACATCCTCTTTTGTTCT  650

seq1  GTGTAAAGGTGTCACACACACACACACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGGTGTCACACACACACACACACACACACACACACACACACACA  700

seq1  CACCACACCTGTACAAATATGATTTCTCTTTAACTATTGGATTTCCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCTGTACAAATATGATTTCTCTTTAACTATTGGATTTCCTTGG  750

seq1  TCCTTCTGTTCTTCAGAATGGCAGTCCTGATTCCTCAGCTTTGAGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGTTCTTCAGAATGGCAGTCCTGATTCCTCAGCTTTGAGAACTG  800

seq1  TCTTTTGTAAAACTTCTAATGTGGTTCTCAAATGAGTTGTAAATGCTACA  850
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTTTGT-AAACTTCTAATGTGGTTCTC-AATGAGTTGTAAATGCTACA  848

seq1  TTTATCATATGATTTTGTCTTTTTCCATGATCAGACCCCAAAATTCTGAT  900
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TTTATCATATGA-TTTGTCTTTTTCCATGATCAGACCCC-AAATTCTGAT  896

seq1  ATTTATTCTGTAGTTTTATAATGTCATACATCTACCATTA-CAGTAACAT  949
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  ATTTATTCTGTAG-TTTATAATGTCATACATCTACCATTACCAGTAACAT  945

seq1  AGAGGGAAAAAAGTTCATTGTTTTAAAACTTGATAAGGTAAAGCTATTTA  999
      ||| |||||||   ||||||  || || |||||||| ||||||||| |||
seq2  AGAAGGAAAAA--GTCATTG--TTCAACCTTGATAA-GTAAAGCTAATTA  990

seq1  TTTGTTTTTCCCTCCCCTAGGAAAGAAGGTTACTGCTCTTTGCACTTCAT  1049
        || ||||||||  |||| ||||||||    |  |||||||||||||| 
seq2  -ATGGTTTTCCCT--CCTA-GAAAGAAGTAATCGCCTCTTTGCACTTCA-  1035

seq1  TTATATGTTTGTCTTGCAAACTACTTACAATCTAC-TCTGAACTGT-AAC  1097
      | ||||| ||| |||||||||||||||| | ||||  ||||  ||| |||
seq2  TAATATG-TTGCCTTGCAAACTACTTACCACCTACACCTGACGTGTAAAC  1084

seq1  CAGGTTCACTGAAGCTGTGTGC-AT-AAGGAT--CTCCTTTAT  1136
       ||||||||| |  |||||  | || ||||||  |||||||||
seq2  AAGGTTCACT-AGACTGTGGACTATAAAGGATTCCTCCTTTAT  1126

seq1: chr4_112063038_112064083
seq2: B6Ng01-122K02.g_66_1099 (reverse)

seq1  GTATGTATATATACCAAAGGAGATCAAAAATCAGCTTTTAGTGGTCTTAG  50
      ||||||||| | |||||| |||||| |||||||||||||||| ||| |||
seq2  GTATGTATA-AAACCAAA-GAGATC-AAAATCAGCTTTTAGT-GTC-TAG  45

seq1  AAAATGAAAAGGATAAATCAAATGAGAAAAAAATGTACTTTTTGTTTAAT  100
       ||||| ||||||| ||||||||||| |||||||||||||||||||||| 
seq2  -AAATG-AAAGGAT-AATCAAATGAG-AAAAAATGTACTTTTTGTTTAA-  90

seq1  TTTCATAAAGAATATCTAAACCAAAAGTAGTTTAATGTTTATAAATTATT  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCATAAAGAATATCTAAACCAAAAGTAGTTT-ATGTTTATAAATTATT  139

seq1  GGTTTGGTGGAAATGATATATGCCATCAGAAAATTATGCTTTGTAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTTTGGTGGAAATGATATATGCCATCAGAAAATTATGC-TTGTAGAAGC  188

seq1  CTGTAGTTGATTCAATGAAGACCAGACCTGGAGAAATAAATCATTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTGATTCAATGAAGACCAGACCTGGAGAAATAAATCATTTCATT  238

seq1  GTTACATAAACAACTGTGACTGTGAGTATAAAAATATAAGTAGTCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAAACAACTGTGACTGTGAGTATAAAAATATAAGTAGTCATGAT  288

seq1  AGAAGACTAAAACTTTGAAAAATATGTCATTCCAAGGACAGCACTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTAAAACTTTGAAAAATATGTCATTCCAAGGACAGCACTTGAAT  338

seq1  CCACTAGGATGTTACTGAAACCATGACTGTTACTGCTGTGACAAAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGATGTTACTGAAACCATGACTGTTACTGCTGTGACAAAGGCTA  388

seq1  TTCAGCTAAATAGTTCCAAAATGAGAAGGCACTGGACAGAGGAGAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAAATAGTTCCAAAATGAGAAGGCACTGGACAGAGGAGAGGGAA  438

seq1  ATGTCGGATTTCATTCTAGTTCCACTCACCTCTACTTCTGAAACTCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGGATTTCATTCTAGTTCCACTCACCTCTACTTCTGAAACTCACGT  488

seq1  AGATAGGAAGGAAGGCAATATACAAAACTAACAGTAGGCACTCCCAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGGAAGGCAATATACAAAACTAACAGTAGGCACTCCCAGATA  538

seq1  AGCAAACAGCAAACTCCCATTTTACTATACAAAGCTGAAAAAGAGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGCAAACTCCCATTTTACTATACAAAGCTGAAAAAGAGTCAGT  588

seq1  AGCAAAAGTTAGGAAGTCTTGTGGAATTCATTGAAACAAGAAAAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTTAGGAAGTCTTGTGGAATTCATTGAAACAAGAAAAGAAATG  638

seq1  TTGAATACAGGCATTGTCTTGAAGGTCTTGATGCTATATCCATTTGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACAGGCATTGTCTTGAAGGTCTTGATGCTATATCCATTTGTTTA  688

seq1  TTTAAGTTATGTCAGGGCTAAAGCCTCATAAGAAATATTTTTAGGGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTATGTCAGGGCTAAAGCCTCATAAGAAATATTTTTAGGGTTAG  738

seq1  CGTTAGTAAGATACAACTTAGAATTTGGTGAAAGTAAGATTATCGTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTAAGATACAACTTAGAATTTGGTGAAAGTAAGATTATCGTCATT  788

seq1  TAGTCTGAAAATACAACAGACTTAAAAACAATATCAAATAATAAATATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAAAATACAACAGACTTAAAAACAATATCAAATAATAAATATCT  838

seq1  TCTCCCTTTTGTTCACAACTGTGTAGCACATAATCAGCCTGAAAACATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTTTGTTCACAACTGTGTAGCACATAATCAGCCTGAAAACATGA  888

seq1  TTTGGATGCTGTGGGACCCTGTCTCCATTCTTAAGTGCCTAAAGGTTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCTGTGGGACCCTGTCTCCATTCTTAAGTGCCTAAAGGTTGTA  938

seq1  GGATCCACAGAGAAGGGCTTCTGTGAAACTCTGAGCTAGCTAAAAGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACAGAGAAGGGCTTCTGTGAAACTCTGAGCTAGCTAAAAGAAAA  988

seq1  AGAAACTGCCTTCACTCACACAGTAAGGAATACTCTGAAAGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCCTTCACTCACACAGTAAGGAATACTCTGAAAGAATTC  1034