BAC Information

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BAC

Clone NameB6Ng01-122N18
Chromosome4 (Build37)
Map Location 36,901,746 - 37,040,599
singlet/doubletdoublet
Overlap geneLOC100042132
Upstream genenone
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122N18.bB6Ng01-122N18.g
ACCDH926178DH926179
length4291,086
definitionDH926178|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N18, 5' end.DH926179|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,901,746 - 36,902,180)(37,039,494 - 37,040,599)
sequence
catggagaacaaacctggagataatggagtgacaagtaactgttttgcca
tgtgatttgtgtacatcaatttagtgatgctctgtgttctcagatgacag
gaaaactgatgcttatgcaaatttgtcagaggtaatgaaactattttgtc
ataaataagtacgcatggaacctatgcccactctattatgaagtctttac
ttttaactgtcttgctcatttctatcattcaggaacaaacatttgtggtt
attcagagttaaaggggaccattttattatatttaaatttagactatggt
gctacaggcaaaagatgaatgcagaattaaatggtatgataatttacaat
aagtttcattttatgcaattttcttggttcctacttgtcttataggaata
ctgaaagaggggtgggtgggtatggggga
gaattctggggctggtaagggagaaactgaatatccagtggaaggtgtct
acccagattatttgtactgggaataggtgatattacacagtgaatcagga
caggaaggagagagggagcctcctgatgtcatgttaatgtggtacagact
gcccacacacacacatgatcaaaatattttttctggagataaaatcataa
gataatggtttacttacccaaatcaaattttctcaaaattcaggttttta
tttgttttgttttgttttgtttgtctattgattttttacagggtctagca
taggcctagaactcactagataagctggctggtctctaactcataaatgt
tgccaacccagagcaggagtaaaggcacgcgtcatccatgattgattctc
attatttttagactgtcatgttggtgcacactggtaatctcaacagttag
gagatagagaaagtaggtactctgggtcatctctaccgatttggtcagtt
tgagtcatccttaccctcaggagacttgctaatctaaaattaaatagaat
tttaaaattcattattttattctctatcagtatcatttatctccgaccct
tcatttcaaactcttcagttgaagtttcttctcttatccaggagagcaag
gcttcttttgcctttgctccagtcttaggtgaagtctcctgtggcctgga
gctccagctgtggatttagctgcctgatacctgctgatggggatgacagc
ctgcattcattttttattataatgttaataacttttatgttttttacagt
ccagtcattaccctcctctgtgtctgccctccaacagtttccatcccatt
cctcctctccactgacttcagaggatgtccccacaccccaacccatccca
ccaggctccccactccctgggatctcaagtctctcaagattagcacatct
cacactgagtcagaccagcatcctctactgcatatgtgtaggcctcagac
cagctagtgtatgtgatgctcgtgtctgaaaagaatctaggggtagtgga
gatgctggcttcttgaatcgcccctttcagcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36901746_36902180
seq2: B6Ng01-122N18.b_49_483

seq1  GAATTCCATGGAGAACAAACCTGGAGATAATGGAGTGACAAGTAACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGAACAAACCTGGAGATAATGGAGTGACAAGTAACTGTT  50

seq1  TTGCCATGTGATTTGTGTACATCAATTTAGTGATGCTCTGTGTTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGTGATTTGTGTACATCAATTTAGTGATGCTCTGTGTTCTCAGA  100

seq1  TGACAGGAAAACTGATGCTTATGCAAATTTGTCAGAGGTAATGAAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAAACTGATGCTTATGCAAATTTGTCAGAGGTAATGAAACTAT  150

seq1  TTTGTCATAAATAAGTACGCATGGAACCTATGCCCACTCTATTATGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATAAATAAGTACGCATGGAACCTATGCCCACTCTATTATGAAGT  200

seq1  CTTTACTTTTAACTGTCTTGCTCATTTCTATCATTCAGGAACAAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTTAACTGTCTTGCTCATTTCTATCATTCAGGAACAAACATTT  250

seq1  GTGGTTATTCAGAGTTAAAGGGGACCATTTTATTATATTTAAATTTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTCAGAGTTAAAGGGGACCATTTTATTATATTTAAATTTAGAC  300

seq1  TATGGTGCTACAGGCAAAAGATGAATGCAGAATTAAATGGTATGATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGCTACAGGCAAAAGATGAATGCAGAATTAAATGGTATGATAATT  350

seq1  TACAATAAGTTTCATTTTATGCAATTTTCTTGGTTCCTACTTGTCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAGTTTCATTTTATGCAATTTTCTTGGTTCCTACTTGTCTTATA  400

seq1  GGAATACTGAAAGAGGGGTGGGTGGGTATGGGGGA  435
      |||||||||||||||||||||||||||||||||||
seq2  GGAATACTGAAAGAGGGGTGGGTGGGTATGGGGGA  435

seq1: chr4_37039494_37040599
seq2: B6Ng01-122N18.g_70_1155 (reverse)

seq1  AAGAAGCTGAAAAGGGCGAATCTATAGGAAGACCAGCAATCTCAACTAAC  50
      |||||||||||| |||||| ||   | |||| ||||| ||||| |||| |
seq2  AAGAAGCTGAAAGGGGCGATTC---AAGAAG-CCAGC-ATCTCCACTACC  45

seq1  CCTCTGAGAT--CTCTCAGACACCGAGCCATCAACATACACTAGCTGGTC  98
      |||   ||||   | ||||||| |||| |||| |||||||||||||||||
seq2  CCT---AGATTCTTTTCAGACA-CGAG-CATC-ACATACACTAGCTGGTC  89

seq1  TGAGGCCCCTACACATATGCAGTAGAGGATTGCCTGGTCTGACCTCAGTG  148
      |||||  |||||||||||||||||||||||   ||||||||| |||||||
seq2  TGAGG--CCTACACATATGCAGTAGAGGAT--GCTGGTCTGA-CTCAGTG  134

seq1  TGAGATGTGCCTAATCCTTGAGAGACTTGAGATCCCAGGGAGTGGGGAGG  198
      ||||||||| ||||| |||||||||||||||||||||||||||||||| |
seq2  TGAGATGTG-CTAAT-CTTGAGAGACTTGAGATCCCAGGGAGTGGGGA-G  181

seq1  CCTGGTGGGATGGGGTTGGGGTGTGGGGACATCCTCTTGAAGTCAGTGGA  248
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CCTGGTGGGAT-GGGTTGGGGTGTGGGGACATCCTC-TGAAGTCAGTGGA  229

seq1  GAGGAGGAATGGGATGGGAAACTGTTGGAGGGCAGACACAGAGGAGGGTA  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAATGGGAT-GGAAACTGTTGGAGGGCAGACACAGAGGAGGGTA  278

seq1  ATGACTGGACTGTAAAAAACATAAAAGTTATTAACATTATAATAAAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGACTGTAAAAAACATAAAAGTTATTAACATTATAATAAAAAAT  328

seq1  GAATGCAGGCTGTCATCCCCATCAGCAGGTATCAGGCAGCTAAATCCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGGCTGTCATCCCCATCAGCAGGTATCAGGCAGCTAAATCCACA  378

seq1  GCTGGAGCTCCAGGCCACAGGAGACTTCACCTAAGACTGGAGCAAAGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTCCAGGCCACAGGAGACTTCACCTAAGACTGGAGCAAAGGCA  428

seq1  AAAGAAGCCTTGCTCTCCTGGATAAGAGAAGAAACTTCAACTGAAGAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCTTGCTCTCCTGGATAAGAGAAGAAACTTCAACTGAAGAGTT  478

seq1  TGAAATGAAGGGTCGGAGATAAATGATACTGATAGAGAATAAAATAATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAGGGTCGGAGATAAATGATACTGATAGAGAATAAAATAATGA  528

seq1  ATTTTAAAATTCTATTTAATTTTAGATTAGCAAGTCTCCTGAGGGTAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTCTATTTAATTTTAGATTAGCAAGTCTCCTGAGGGTAAGG  578

seq1  ATGACTCAAACTGACCAAATCGGTAGAGATGACCCAGAGTACCTACTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAAACTGACCAAATCGGTAGAGATGACCCAGAGTACCTACTTTC  628

seq1  TCTATCTCCTAACTGTTGAGATTACCAGTGTGCACCAACATGACAGTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCCTAACTGTTGAGATTACCAGTGTGCACCAACATGACAGTCTA  678

seq1  AAAATAATGAGAATCAATCATGGATGACGCGTGCCTTTACTCCTGCTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGAGAATCAATCATGGATGACGCGTGCCTTTACTCCTGCTCTG  728

seq1  GGTTGGCAACATTTATGAGTTAGAGACCAGCCAGCTTATCTAGTGAGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCAACATTTATGAGTTAGAGACCAGCCAGCTTATCTAGTGAGTTC  778

seq1  TAGGCCTATGCTAGACCCTGTAAAAAATCAATAGACAAACAAAACAAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTATGCTAGACCCTGTAAAAAATCAATAGACAAACAAAACAAAAC  828

seq1  AAAACAAATAAAAACCTGAATTTTGAGAAAATTTGATTTGGGTAAGTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATAAAAACCTGAATTTTGAGAAAATTTGATTTGGGTAAGTAAA  878

seq1  CCATTATCTTATGATTTTATCTCCAGAAAAAATATTTTGATCATGTGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCTTATGATTTTATCTCCAGAAAAAATATTTTGATCATGTGTGT  928

seq1  GTGTGGGCAGTCTGTACCACATTAACATGACATCAGGAGGCTCCCTCTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCAGTCTGTACCACATTAACATGACATCAGGAGGCTCCCTCTCT  978

seq1  CCTTCCTGTCCTGATTCACTGTGTAATATCACCTATTCCCAGTACAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTCCTGATTCACTGTGTAATATCACCTATTCCCAGTACAAATA  1028

seq1  ATCTGGGTAGACACCTTCCACTGGATATTCAGTTTCTCCCTTACCAGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTAGACACCTTCCACTGGATATTCAGTTTCTCCCTTACCAGCCC  1078

seq1  CAGAATTC  1106
      ||||||||
seq2  CAGAATTC  1086