BAC Information

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BAC

Clone NameB6Ng01-123E01
Chromosome4 (Build37)
Map Location 146,706,838 - 146,765,191
singlet/doubletdoublet
Overlap geneLOC666581, EG666588
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E01.bB6Ng01-123E01.g
ACCDH926468DH926469
length1,0921,132
definitionDH926468|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E01, 5' end.DH926469|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,764,171 - 146,765,191)(146,706,838 - 146,707,986)
sequence
gaattctctgatgctttctcagagtgaatttgtcagtaaagcatttgtcg
cattcactacatttgtaaggtttctctcctgtatgaattctctgatgctt
tctcagagtgaatttgtcagtaaagcatttgtcgcattcactacatttgt
aaggtttctctcctgaatgaattctacgatgaatactaagatgggatggt
tgggtaaagcatttgtcacactcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaactctcagactgcctttgtcagtaaagcatttgt
cacattcattacatttgtaaggtttctctcctgtatgaattctctgatgc
tttctcagagtgcatttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattgtatgatgaatactaagatgggaag
gttgggtaaagcatttgtcactttcactatatttgtaagatttctttcct
ggataaattctctgctgactttgaagattgtcactctgagtaaagcattt
gtcaaattcaccacaagtgtaagtgttcatttcactattgttttgtctca
caatgggtttatgtttagaaaccaaaacctcatcaagatttttatttctg
ttgtgttctttcttctctacgtgggttccttgattgagactaatgataga
agacccctttaaacagtttacacagtctttatatgtgcaaacttgtttag
tggtcccagttttatgtctttttaggtttgaggattggagagtggcatct
ctgtggttagttttatgaggtgtactttcggaggattcatgaattatatt
gctagactcattacatttaaaagacttctcttggatatgcccatgctcat
tgaaaatgtgctgtgtgtcttgttccacgaccttctccttctcatagttt
ccacatatgcagtgatttctgaaaaaacggggatttagggatacagggat
actatatgaggagtagtatgatccatatcactgttttatgtatctactct
caagaaagtttttccttttttatcatgcatggatctcagaag
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttaccaaacaatccaatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgaaaaatgctttaatgaaaaaaaca
ttctgaaaattcatcagagaattcatacaggagagagaccttacaaatgc
agtgaatgtgaaaaatgcttttcccgaaaattccatcttggtattcatca
gagaattcatacaggaaagaaaccttacaaatagattgtatgtgacaaat
acaatactcacaatgtcagtcttagaaatcatcagttatttcatacagta
gagaatctttataaatgaagtaaatgaggcaattctttaccaagatatat
tatctcaaaattcattagagaatacttagagaagacaaacttttcaaata
tattgtaggtatgaatcctttccttttggcctatttcctagactgtaaca
gtgaatacttacaggctagaaacttaactcatgcattgtatgaagaaata
tctttgacttcatttcaggtcagagagaacatctaagaactttttagggt
aaagtatttctgttggggaaaatggtgtattcttggcaacacttgaggct
ccacactagagaattagtatgattatgaaaatcttgtgaaaatattcatg
caatgttcaaatcttaggtaatgtcaactatttatgctgtgagaaactct
gaaaatgtgaaatgtagaaagcttttcatgacacctttttacttgttcat
cctcaaacgttaccagatgaagacaagttgggaagtcagaagatagtatt
ttataacactttaatcgagaaagaaataatccatttcaaaaggaaactat
taaggtctttaatacaaccctcaaaataggtataaaactggtagcatttg
tatattttatgtcctgtaactaactccaataaactgaaagatcacaaatt
tgctttggttgttccattgcagtgggatacccagatgaatatatgttgca
tctcccaggaaatgcctccaaataaaacaatagactggagtcatgaacat
tttgcaactgtaacataaagtaaacggtgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146764171_146765191
seq2: B6Ng01-123E01.b_130_1135 (reverse)

seq1  CTTCTGAGGATCCATGCAATGATTAAAAAAAGGAAAAACCTCTCTTGAGA  50
      ||||||| ||||||||| |||||  ||||||||||||| || ||||||||
seq2  CTTCTGA-GATCCATGC-ATGAT--AAAAAAGGAAAAA-CTTTCTTGAGA  45

seq1  GTATGAATACATAGAACAGTGATTATTGGATCATACTTACTCCTCATATA  100
      |||   ||||||| |||||||||   |||||||||| |||||||||||| 
seq2  GTA--GATACATAAAACAGTGAT--ATGGATCATAC-TACTCCTCATAT-  89

seq1  AGTAATCCCTGTTATCCCTAATTCCCCCTTTTTTTCAGAAAATCACTGCA  150
      ||| ||||||| ||||||||| | |||| ||||||||| |||||||||||
seq2  AGT-ATCCCTG-TATCCCTAAAT-CCCCGTTTTTTCAG-AAATCACTGCA  135

seq1  TATGTGGAAACTATGAGAAGGAGAAGGTCGTGGAACAAGACACACAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAACTATGAGAAGGAGAAGGTCGTGGAACAAGACACACAGCAC  185

seq1  ATTTTCAATGAGCATGGGCATATCCAAGAGAAGTCTTTTAAATGTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATGAGCATGGGCATATCCAAGAGAAGTCTTTTAAATGTAATGA  235

seq1  GTCTAGCAATATAATTCATGAATCCTCCGAAAGTACACCTCATAAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAATATAATTCATGAATCCTCCGAAAGTACACCTCATAAAACTA  285

seq1  ACCACAGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACT  335

seq1  GGGACCACTAAACAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACTAAACAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAA  385

seq1  GGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACGTAGAGAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACGTAGAGAAGAAAG  435

seq1  AACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAA  485

seq1  CCCATTGTGAGACAAAACAATAGTGAGATGAACACTTACACTTGTGGTGA  550
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCATTGTGAGACAAAACAATAGTGAAATGAACACTTACACTTGTGGTGA  535

seq1  ATTTGACAAATGCTTTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAAATGCTTTACTCAGAGTGACAATCTTCAAAGTCAGCAGAGAA  585

seq1  TTTATCCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTT  635

seq1  ACCCAACCTTCCCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCTTCCCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAA  685

seq1  ACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTC  735

seq1  TGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAAT  785

seq1  GAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAG  835

seq1  AATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTGACAAATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTGACAAATGCT  885

seq1  TTACCCAAACATCCCATCTTAGTATTCATCGTAGAATTCATTCAGGAGAG  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAACCATCCCATCTTAGTATTCATCGTAGAATTCATTCAGGAGAG  935

seq1  AAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAAGGCAG  1000
      |||||||||||||||||||||||||||||||||||||||||||||  || 
seq2  AAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAATTCAC  985

seq1  TCTGAGAGTTCATCAGAGAAT  1021
      |||||||   |||||||||||
seq2  TCTGAGAAAGCATCAGAGAAT  1006

seq1: chr4_146706838_146707986
seq2: B6Ng01-123E01.g_66_1197

seq1  GAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGC  50

seq1  TTTACCAAACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGA  100

seq1  GAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTAC  150
      |||||||||||||||||||||||||||||||||| |||   |||||  ||
seq2  GAAACCTTACAAATGCAGTGAATGTGAAAAATGC-TTTAATGAAAAAAAC  149

seq1  A-TCTTGGTATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATG  199
      | |||    |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATG  199

seq1  CAGTGAATGTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATC  249

seq1  AGAGAATTCATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAA  299

seq1  TACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGT  349

seq1  AGAGAATCTTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCTTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATA  399

seq1  TTATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAAT  449

seq1  ATATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAAC  499

seq1  AGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAAT  549

seq1  ATCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGG  599

seq1  TAAAGTATTTCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGC  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAGTATTTCTGTTGGGGAAAATGGTGTATTCTTGGCAACACTTGAGGC  649

seq1  TCCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCAT  699

seq1  GCAATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTC  749

seq1  TGAAAATGTGAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTGAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  799

seq1  TCCTCAAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTAT  849

seq1  TTTATAACACTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACACTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAACTA  899

seq1  TTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCAT  949
       |||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  -TTAAGGTCTTTAATACAACCCTCAAAATAGGT-ATAAAACTGGTAGCA-  946

seq1  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAGATT  999
      ||||||||||||   ||||||||||||||||||||| |||||||||||| 
seq2  TTTGTATATTTT--ATGTCCTGTAACTAACTCCAAT-AAACTGAAAGAT-  992

seq1  CAACAAATTTGCTTTGGTTGTTTCCAATTTGCAGTTGGGATACTCAGATG  1049
        |||||||||||||||||| |||||  |||||| |||||||| ||||||
seq2  -CACAAATTTGCTTTGGTTG-TTCCA--TTGCAG-TGGGATACCCAGATG  1037

seq1  AATATATGTTGCATCTTCCCAGGAAATGCCT-CACATAAAAC-ATAGACT  1097
      ||||||||||||||| ||||||||||||||| || ||||||| |||||||
seq2  AATATATGTTGCATC-TCCCAGGAAATGCCTCCAAATAAAACAATAGACT  1086

seq1  GAAGTCATGAACATTTTTGCAAACCTGTATCATAAAGTTAATAGTGGTGA  1147
      | ||||||||||| ||||||||  ||||| |||||||| ||    |||||
seq2  GGAGTCATGAACA-TTTTGCAA--CTGTAACATAAAGTAAA---CGGTGA  1130

seq1  TT  1149
      ||
seq2  TT  1132