BAC Information

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BAC

Clone NameB6Ng01-123E13
Chromosome4 (Build37)
Map Location 130,206,605 - 130,397,183
singlet/doubletdoublet
Overlap genePum1, LOC622577, Sdc3
Upstream geneHdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik
Downstream geneLaptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799, Ptpru
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E13.bB6Ng01-123E13.g
ACCDH926491DH926492
length1,0851,056
definitionDH926491|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E13, 5' end.DH926492|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,206,605 - 130,207,714)(130,396,121 - 130,397,183)
sequence
gaattcacttagaagaccagacttgcctcacactcacagcgacctgcctg
cctctgcctcttcagtgttgtaattaataaaggcctgcactgccaccgcc
cgcccagtggtcctggtattttatcacaaaatcaacaacatgactaacat
aggcctacaattgacttgtttccttaacatttctactggggtcattattt
agaaactgacaaattcttatttgaaatattgattggtctgtttgcttgtt
tatttgagacagggtcccactaggtagccttacctagcttgttagtcact
atatagaccaagctgccatcaaactcatagattccagcttctgcctcttg
aatgttgggactaagggtgtgtgctgccatgcctggcttaatttaatgat
ttttatttgtcttttattttttagtcttctatgcaactctgtaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaactccaacaggatcccctttgctgtg
gtctcactgtatctcctgaaacttttgttgaactggtctttgtcagtggt
tttaggcccagaattcaggagacagaggcaggtggatctatgtaggttta
aggccagcctggtctacatactgagttccaagccagtagagtcgtacagt
aagaacctgtctcaaaagaaggaaaaaaaaagtgcctgtgtgtctggctg
ttttgcccgtgtgcaggttgcctgtttgtgtctgttgctctcagaggcct
gaagaactaactggggtcattttgggtgtgtgccaccatgtggggtgcta
ggaattgagccggtttcttctgaaagagcagccagggctctgaactgcgg
attcagtcttgtttattgtttaaaaaacttagctttctctgagtctggaa
tctgagtaaaacacacacagctgccctcttactaaagtgctactgttgct
ggtgagggcttgctctgatgtcccttcccaagaattctatcaaaaccaaa
gcagttcagaagtaagaatcaactaaaggataactgtgaaagcaatgaat
gtggtttggggaccatagcttggggctgcaggact
gaattccctccccagctgggagggagacaggagaggaaggggtcatctgg
cttcctggagtcagggcagcgcctgggcagagtggacttcctgtttcccg
agggaatgaaaggctagggtgaagttgcttgcctctctcccctcccctta
gccacggtgaaatctgtccccagatcacctcccctgcgtcaccccgaagc
ctgtgtgggtgagaaagttgcagagacaagggtcctttgtctctgcagtg
caccaagatgttccctccctacatcctgggccctgggagcctatacccat
tcttcagatggggaaactaaggaagtttctcaagttccaaagccggtgat
ggttgagactgaaacttcaggaaaccttgtccagagctctaggtaccaaa
cgtattctgtcttatggtgtcatggggacactgtcatggggacactgtgg
accctcagggtctggtgacctcagacatgaatgttgcactcctttctcct
gcttgtgttctgagaagcgtgtcatggggtctcctgctggccccatgtgt
ctatctcaagtgtgcactttggcagttgtccttggggacagacagaccat
ggtgtggagcctgggtacaaatgaccacaaaacaaggtggccagtccacc
agcccctggccaggggaatgagcttggctgccaaacagccccagagtctg
tctgactacagtaccagcttgctgtgtgtttttgggctgagggtttcgcc
tctctgtgcttcagtttcttcatctctggcatgtttatgcatttgcccgg
gactgctgggggtcaggaccaccagcacggaaacttcgaacaacagcatc
tgttctctcctattctggaggctgagcccaaggcaagtgcagagcagggc
tgcttcctccttggggttcccagggagactgagacccacgcatgaatccc
ggccttcaccagcctgtagcaacaaattcttacgctgcctctgccatccc
tgttggtccaaagtcccccttaagaacagtaggcttggacctacctacga
agcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_130206605_130207714
seq2: B6Ng01-123E13.b_44_1128

seq1  GAATTCACTTAGAAGACCAGACTTGCCTCACACTCACAGCGACCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAGAAGACCAGACTTGCCTCACACTCACAGCGACCTGCCTG  50

seq1  CCTCTGCCTCTTCAGTGTTGTAATTAATAAAGGCCTGCACTGCCACCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTTCAGTGTTGTAATTAATAAAGGCCTGCACTGCCACCGCC  100

seq1  CGCCCAGTGGTCCTGGTATTTTATCACAAAATCAACAACATGACTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGTGGTCCTGGTATTTTATCACAAAATCAACAACATGACTAACAT  150

seq1  AGGCCTACAATTGACTTGTTTCCTTAACATTTCTACTGGGGTCATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACAATTGACTTGTTTCCTTAACATTTCTACTGGGGTCATTATTT  200

seq1  AGAAACTGACAAATTCTTATTTGAAATATTGATTGGTCTGTTTGCTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGACAAATTCTTATTTGAAATATTGATTGGTCTGTTTGCTTGTT  250

seq1  TATTTGAGACAGGGTCCCACTAGGTAGCCTTACCTAGCTTGTTAGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGACAGGGTCCCACTAGGTAGCCTTACCTAGCTTGTTAGTCACT  300

seq1  ATATAGACCAAGCTGCCATCAAACTCATAGATTCCAGCTTCTGCCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACCAAGCTGCCATCAAACTCATAGATTCCAGCTTCTGCCTCTTG  350

seq1  AATGTTGGGACTAAGGGTGTGTGCTGCCATGCCTGGCTTAATTTAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGACTAAGGGTGTGTGCTGCCATGCCTGGCTTAATTTAATGAT  400

seq1  TTTTATTTGTCTTTTATTTTTTAGTCTTCTATGCAACTCTGTAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTCTTTTATTTTTTAGTCTTCTATGCAACTCTGTAAAAAAAA  450

seq1  AAAAAAAAAAAAAAAAAAAAAAAAACTCCAACAGGATCCCCTTTGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAACTCCAACAGGATCCCCTTTGCTGTG  500

seq1  GTCTCACTGTATCTCCTGAAACTTTTGTTGAACTGGTCTTTGTCAGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGTATCTCCTGAAACTTTTGTTGAACTGGTCTTTGTCAGTGGT  550

seq1  TTTAGGCCCAGAATTCAGGAGACAGAGGCAGGTGGATCTATGTAGGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCCAGAATTCAGGAGACAGAGGCAGGTGGATCTATGTAGGTTTA  600

seq1  AGGCCAGCCTGGTCTACATACTGAGTTCCAAGCCAGTAGAGTCGTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACATACTGAGTTCCAAGCCAGTAGAGTCGTACAGT  650

seq1  AAGAACCTGTCTCAAAAGAAGGAAAAAAAAAGTGCCTGTGTGTCTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTGTCTCAAAAGAAGGAAAAAAAAAGTGCCTGTGTGTCTGGCTG  700

seq1  TTTTGCCCGTGTGCAGGTTGCCTGTTTGTGTCTGTTGCTCTCAGAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCGTGTGCAGGTTGCCTGTTTGTGTCTGTTGCTCTCAGAGGCCT  750

seq1  GAAGAACTAACTGGGGTCACTTCTGGGTGTGTGCCACCATGT-GGGTGCT  799
      ||||||||||||||||||| || ||||||||||||||||||| |||||||
seq2  GAAGAACTAACTGGGGTCA-TTTTGGGTGTGTGCCACCATGTGGGGTGCT  799

seq1  AGGAATTGAGCCGG-TTCCTCTGAAAGAGCAGCCAAGGCTCTGAACTGCG  848
      |||||||||||||| ||| |||||||||||||||| ||||||||||||||
seq2  AGGAATTGAGCCGGTTTCTTCTGAAAGAGCAGCCAGGGCTCTGAACTGCG  849

seq1  GAATCAGTC-TGTTTAATGTTTTAAAAGAACTTAGCTTTCTCTGAGTCTG  897
      || |||||| |||||| |||||  ||| ||||||||||||||||||||||
seq2  GATTCAGTCTTGTTTATTGTTT--AAAAAACTTAGCTTTCTCTGAGTCTG  897

seq1  GAATCTGGAGT-AAACACACACAGCTGCCCTCCTTACTAAAGTGGCTACT  946
      |||||| |||| ||||||||||||||||||| ||||||||||| ||||||
seq2  GAATCT-GAGTAAAACACACACAGCTGCCCT-CTTACTAAAGT-GCTACT  944

seq1  GTTGCTGGTTGAGGGCTTGCTCTTGATGTCCCTTCCCAAAGAAATTCTAA  996
      |||||||| ||||||||||||| ||||||||||||||||   |||||| |
seq2  GTTGCTGG-TGAGGGCTTGCTC-TGATGTCCCTTCCCAA--GAATTCT-A  989

seq1  TCAAAAACCAAAGCAGGTTCAGAAAGTAAGAAACCAAACTAAAGGATAGA  1046
      || |||||||||||| |||||| ||||||||| |  |||||||||||| |
seq2  TC-AAAACCAAAGCA-GTTCAG-AAGTAAGAATC--AACTAAAGGATA-A  1033

seq1  CTGTGACAGAGGCAGATGAATGTGTGTCTCTGGGGACCCATAGGCTCTGG  1096
      ||||||   | ||| |||||||||    | |||||| ||||||   || |
seq2  CTGTGA---AAGCA-ATGAATGTG---GTTTGGGGA-CCATAG---CTTG  1072

seq1  GGGCCTGCAGGACT  1110
      ||| ||||||||||
seq2  GGG-CTGCAGGACT  1085

seq1: chr4_130396121_130397183
seq2: B6Ng01-123E13.g_69_1124 (reverse)

seq1  CAGGCTCTGGTAGGTAGGTCCAGTGCCTGCTGCTCTTTAAGGGGGACATT  50
      |||||| | |||||||||||||  |||| ||| || ||||||||||| ||
seq2  CAGGCT-TCGTAGGTAGGTCCA-AGCCTACTGTTC-TTAAGGGGGAC-TT  46

seq1  TGGACACACAGGGAATGGCAGAGGCAGCGGTTAGAATTTGCTGCTACAGG  100
      |||||  |||||| |||||||||||||| || |||||||| |||||||||
seq2  TGGACCAACAGGG-ATGGCAGAGGCAGC-GTAAGAATTTGTTGCTACAGG  94

seq1  CTGGTGAGAGCCGGGAGTCATGCGTGGGTCTCAGTCTCCCTGGGAACCCC  150
      |||||||  ||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGTGAAGGCCGGGATTCATGCGTGGGTCTCAGTCTCCCTGGGAACCCC  144

seq1  AAGGAGGATGCAGCCCTGCTCTGCCCTTGGCCTTTGGGCTCAGCCTCCAG  200
      |||||||| ||||||||||||||| ||||  | |||||||||||||||| 
seq2  AAGGAGGAAGCAGCCCTGCTCTGCACTTG--CCTTGGGCTCAGCCTCCA-  191

seq1  GACTAGGAGAGAACAGATGCTGTTGTTCGAAGTTTCCGTGCTGGTGGTCC  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAGAGAACAGATGCTGTTGTTCGAAGTTTCCGTGCTGGTGGTCC  241

seq1  TGA-CCCCAGCAGTCCCGGGCAAATGCATAAACATGCCAGAGATGAAGAA  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCAGCAGTCCCGGGCAAATGCATAAACATGCCAGAGATGAAGAA  291

seq1  ACTGAAGCACAGAGAGGCGAAACCCTCAGCCC-AAAACACACAGCAAGCT  348
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGAAGCACAGAGAGGCGAAACCCTCAGCCCAAAAACACACAGCAAGCT  341

seq1  GGTACTGTAGTCAGACAGACTCTGGGGCTGTTTGGCAGCCAAGCTCATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTAGTCAGACAGACTCTGGGGCTGTTTGGCAGCCAAGCTCATTC  391

seq1  CCCTGGCCAGGGGCTGGTGGACTGGCCACCTTGTTTTGTGGTCATTTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCAGGGGCTGGTGGACTGGCCACCTTGTTTTGTGGTCATTTGTA  441

seq1  CCCAGGCTCCACACCATGGTCTGTCTGTCCCCAAGGACAACTGCCAAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCACACCATGGTCTGTCTGTCCCCAAGGACAACTGCCAAAGT  491

seq1  GCACACTTGAGATAGACACATGGGGCCAGCAGGAGACCCCATGACACGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTGAGATAGACACATGGGGCCAGCAGGAGACCCCATGACACGCT  541

seq1  TCTCAGAACACAAGCAGGAGAAAGGAGTGCAACATTCATGTCTGAGGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAACACAAGCAGGAGAAAGGAGTGCAACATTCATGTCTGAGGTCA  591

seq1  CCAGACCCTGAGGGTCCACAGTGTCCCCATGACAGTGTCCCCATGACACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCTGAGGGTCCACAGTGTCCCCATGACAGTGTCCCCATGACACC  641

seq1  ATAAGACAGAATACGTTTGGTACCTAGAGCTCTGGACAAGGTTTCCTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAGAATACGTTTGGTACCTAGAGCTCTGGACAAGGTTTCCTGAA  691

seq1  GTTTCAGTCTCAACCATCACCGGCTTTGGAACTTGAGAAACTTCCTTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCTCAACCATCACCGGCTTTGGAACTTGAGAAACTTCCTTAGT  741

seq1  TTCCCCATCTGAAGAATGGGTATAGGCTCCCAGGGCCCAGGATGTAGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATCTGAAGAATGGGTATAGGCTCCCAGGGCCCAGGATGTAGGGA  791

seq1  GGGAACATCTTGGTGCACTGCAGAGACAAAGGACCCTTGTCTCTGCAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATCTTGGTGCACTGCAGAGACAAAGGACCCTTGTCTCTGCAACT  841

seq1  TTCTCACCCACACAGGCTTCGGGGTGACGCAGGGGAGGTGATCTGGGGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCACACAGGCTTCGGGGTGACGCAGGGGAGGTGATCTGGGGAC  891

seq1  AGATTTCACCGTGGCTAAGGGGAGGGGAGAGAGGCAAGCAACTTCACCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACCGTGGCTAAGGGGAGGGGAGAGAGGCAAGCAACTTCACCCT  941

seq1  AGCCTTTCATTCCCTCGGGAAACAGGAAGTCCACTCTGCCCAGGCGCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCATTCCCTCGGGAAACAGGAAGTCCACTCTGCCCAGGCGCTGC  991

seq1  CCTGACTCCAGGAAGCCAGATGACCCCTTCCTCTCCTGTCTCCCTCCCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCCAGGAAGCCAGATGACCCCTTCCTCTCCTGTCTCCCTCCCAG  1041

seq1  CTGGGGAAGGAATTC  1063
      ||||||| |||||||
seq2  CTGGGGAGGGAATTC  1056