BAC Information

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BAC

Clone NameB6Ng01-123M04
Chromosome4 (Build37)
Map Location 49,975,156 - 50,107,168
singlet/doubletdoublet
Overlap geneLOC666663
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M04.bB6Ng01-123M04.g
ACCDH926842DH926843
length1,231867
definitionDH926842|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M04, 5' end.DH926843|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,975,156 - 49,976,021)(50,106,303 - 50,107,168)
sequence
gaattccaaacttgcaaaacagtagcattttatatagcaccaataatcat
actaaaaaagaaatgagccaagaaactcataacctacaaaattaaagaat
taactgagagtgttaagtttccctatattgaaaaatatagacaagtgatg
aaagaaattttaccagatattttattatcatagactagaaaacccaatat
tgctaaaataagtataacaccctaattttctacagctttaatgtttgtgg
tcaccaaagcaatgatgatagtcatcataaaagtagaaaaaattctaaaa
tctacatggtattgaatataaatcatgtggaataacaaaaacaatcctaa
aaatcaaaaagtggagaagctgaaaaactgtaatacctgacttcaaaaca
gacttcaaaacagcagcatcaataaaaactggcacacaaagcacaaaaac
aagggagtgaatctagacatttgtctctgtgcagccaaatgagtgtgcac
aaagctgccaagaacacacaatggggaagcgacactaatgaccatagatg
gtgctgataaacagtttgcatatgaagcacaatgaaattacttccctgta
tatataaccagacccgacattcaaataaaacggattaaatacataaacct
aaaatctaaaactataacattacaaattaaaacaagggagaatctgttca
agacattgatgtaggcaaaggtattttggatagaatccttaaaggacagg
ccagaagagtaaaaatagacaagtgtgatatcaagcaaagaaaatttcac
agagcaaatgaaaaaatgacaacagagtaaagagacattccacaaaatgg
ccaaaaatatttgcaaagcattcatctgacagaatacatatatataaatc
tcaataaataataagtatgtctactaaaatatacttactaccagcatttg
atgataagaacttattgttgaagatagcacatattatcacagactataga
gaattaaggcagtactagatatttagcttatttaattactagcttaaatt
agctagagtttctttttttgttgctagatttcatagtgctagattgctta
taacaggttcttaagggaaaaattatcaacattttactcaatggtaaact
ttatgaaatacagattttgctgcagcagtttgccaatgtccatggcagca
tgacattatttggcttaaccactgcttgtga
gaattccaacatggattggagaggggctcatgagtgagactgtaccccaa
gtagaagagttattggaggttgatggctgctacgtaaggaagagtcggtt
ttcttcaggggtgtggcacctggtaggatggtcttactctaacagctcag
cactcataggtgcatgggaagcactaattaagcccattgaattatttttc
acaaaataaggaaaagaacgtgaacttaggagaaggacacggacacatga
gtctaggagaaacgaagaggtgaatatgatcaaaacatatgtttaaaata
ctcaaagaataaaaatttaatattaaaatataatttctcattggaattat
aaggtattcaatgatgggattgtttaatggataatatgtcatgcaataag
atatgaactatcattattgaaatactataaatatgaattaattatgaaat
attctgatggaatatctaagacatagacaagatgttaatttatccatctc
ttatatactttttcaatggctgcaatgatatcatcattttaggaagagcc
acagatgaagttcatggaatcacaactttttctttacaattaggttctag
ccatttaaaaaataaagtatgataatgcaaaacacataataagaacctta
acattctaaatttatttttgttgctgtttagaaaaatagcatgttaaaat
atgttattgttattttaatctataccattttggctgagataaaagaaaat
ttaaaatcaattttattttgcatttccctgacaaaggatgttgacatttt
tacactgtttcttacttatctcggtactttttttggtttgggggttttgg
tttttggttttggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49975156_49976021
seq2: B6Ng01-123M04.b_430_1277

seq1  TACCTGACTTCAAAACAGACTTCAAAACAGCAGCATCAATAAAAACTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACTTCAAAACAGACTTCAAAACAGCAGCATCAATAAAAACTGGC  50

seq1  ACACAAAGCACAAAAACAAGGGAGTGAATCTAGACATTTGTCTCTGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCACAAAAACAAGGGAGTGAATCTAGACATTTGTCTCTGTGCA  100

seq1  GCCAAATGAGTGTGCACAAAGCTGCCAAGAACACACAATGGGGAAGCGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGAGTGTGCACAAAGCTGCCAAGAACACACAATGGGGAAGCGAC  150

seq1  ACTAATGACCATAGATGGTGCTGATAAACAGTTTGCATATGAAGCACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGACCATAGATGGTGCTGATAAACAGTTTGCATATGAAGCACAAT  200

seq1  GAAATTACTTCCCTGTATATATAACCAGACCCGACATTCAAATAAAACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACTTCCCTGTATATATAACCAGACCCGACATTCAAATAAAACGG  250

seq1  ATTAAATACATAAACCTAAAATCTAAAACTATAACATTACAAATTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATACATAAACCTAAAATCTAAAACTATAACATTACAAATTAAAAC  300

seq1  AAGGGAGAATCTGTTCAAGACATTGATGTAGGCAAAGGTATTTTGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAATCTGTTCAAGACATTGATGTAGGCAAAGGTATTTTGGATAG  350

seq1  AATCCTTAAAGGACAGGCCAGAAGAGTAAAAATAGACAAGTGTGATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAAAGGACAGGCCAGAAGAGTAAAAATAGACAAGTGTGATATCA  400

seq1  AGCAAAGAAAATTTCACAGAGCAAATGAAAAAATGACAACAGAGTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAAAATTTCACAGAGCAAATGAAAAAATGACAACAGAGTAAAGA  450

seq1  GACATTCCACAAAATGGCCAAAAATATTTGCAAAGCATTCATCTGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCACAAAATGGCCAAAAATATTTGCAAAGCATTCATCTGACAGA  500

seq1  ATACATATATATAAATCTCAATAAAATAATAAGTATGTCTACTAAAATAT  550
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACATATATATAAATCTCAAT-AAATAATAAGTATGTCTACTAAAATAT  549

seq1  ACTTACTACCAGCATTTGATGATAAGAACTTATTGTTGAAGATAGCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTACCAGCATTTGATGATAAGAACTTATTGTTGAAGATAGCACAT  599

seq1  ATTATCACAGACTATAGAGAAATTAAGGCAGTACTAGATTAATTTAAGCT  650
      ||||||||||||||||||| |||||||||||||||||||  |||| ||||
seq2  ATTATCACAGACTATAGAG-AATTAAGGCAGTACTAGAT--ATTT-AGCT  645

seq1  TAATTTAATTAACTAGCTTAAATTAAGCTAGAAGTTTCTTTTTTGTTGGC  700
      | |||||||| ||||||||||||| |||||| ||||||||||||  | ||
seq2  T-ATTTAATT-ACTAGCTTAAATT-AGCTAG-AGTTTCTTTTTTTGTTGC  691

seq1  TAGATTTCATAGTGCTAGAATGTGCTAT-ACAGGTTCTT-AGGAGAGAAT  748
      ||||||||||||||||||| ||   ||| |||||||||| |||  | |||
seq2  TAGATTTCATAGTGCTAGATTG-CTTATAACAGGTTCTTAAGGGAAAAAT  740

seq1  TATCAACAATTTTACTCAATTGTGAACTTTATGAAATACAAGATTTTGCT  798
      ||||||| |||||||||||| || ||||||||||||||| ||||||||||
seq2  TATCAAC-ATTTTACTCAATGGTAAACTTTATGAAATAC-AGATTTTGCT  788

seq1  GCCAAGCAGTTTTGCCCAGTGGTACAATGGCAGCATGACTATATTGGGCT  848
      ||  ||||||||   ||| ||   | |||||||||||||  |||| ||||
seq2  GC--AGCAGTTT--GCCAATG--TCCATGGCAGCATGACATTATTTGGCT  832

seq1  TAACCAACTGCTTTGTGA  866
      ||||| ||||| ||||||
seq2  TAACC-ACTGC-TTGTGA  848

seq1: chr4_50106303_50107168
seq2: B6Ng01-123M04.g_68_934 (reverse)

seq1  CAAACCAAAACC-AAAACCAAAACCCCCAAACCAAAAAAAGTACCGAGAT  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAAACCAAAAACCAAAACCCCCAAACCAAAAAAAGTACCGAGAT  50

seq1  AAGTAAGAAACAGTGTAAAAATGTCAACATCCTTTGTCAGGGAAATGCAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAAACAGTGTAAAAATGTCAACATCCTTTGTCAGGGAAATGCAA  100

seq1  AATAAAATTGATTTTAAATTTTCTTTTATCTCAGCCAAAATGGTATAGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTGATTTTAAATTTTCTTTTATCTCAGCCAAAATGGTATAGAT  150

seq1  TAAAATAACAATAACATATTTTAACATGCTATTTTTCTAAACAGCAACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAATAACATATTTTAACATGCTATTTTTCTAAACAGCAACAA  200

seq1  AAATAAATTTAGAATGTTAAGGTTCTTATTATGTGTTTTGCATTATCATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTAGAATGTTAAGGTTCTTATTATGTGTTTTGCATTATCATA  250

seq1  CTTTATTTTTTAAATGGCTAGAACCTAATTGTAAAGAAAAAGTTGTGATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTTTAAATGGCTAGAACCTAATTGTAAAGAAAAAGTTGTGATT  300

seq1  CCATGAACTTCATCTGTGGCTCTTCCTAAAATGATGATATCATTGCAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACTTCATCTGTGGCTCTTCCTAAAATGATGATATCATTGCAGCC  350

seq1  ATTGAAAAAGTATATAAGAGATGGATAAATTAACATCTTGTCTATGTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAAGTATATAAGAGATGGATAAATTAACATCTTGTCTATGTCTT  400

seq1  AGATATTCCATCAGAATATTTCATAATTAATTCATATTTATAGTATTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCCATCAGAATATTTCATAATTAATTCATATTTATAGTATTTCA  450

seq1  ATAATGATAGTTCATATCTTATTGCATGACATATTATCCATTAAACAATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATAGTTCATATCTTATTGCATGACATATTATCCATTAAACAATC  500

seq1  CCATCATTGAATACCTTATAATTCCAATGAGAAATTATATTTTAATATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGAATACCTTATAATTCCAATGAGAAATTATATTTTAATATTA  550

seq1  AATTTTTATTCTTTGAGTATTTTAAACATATGTTTTGATCATATTCACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTCTTTGAGTATTTTAAACATATGTTTTGATCATATTCACCT  600

seq1  CTTCGTTTCTCCTAGACTCATGTGTCCGTGTCCTTCTCCTAAGTTCACGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTTCTCCTAGACTCATGTGTCCGTGTCCTTCTCCTAAGTTCACGT  650

seq1  TCTTTTCCTTATTTTGTGAAAAATAATTCAATGGGCTTAATTAGTGCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTATTTTGTGAAAAATAATTCAATGGGCTTAATTAGTGCTTC  700

seq1  CCATGCACCTATGAGTGCTGAGCTGTTAGAGTAAGACCATCCTACCAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACCTATGAGTGCTGAGCTGTTAGAGTAAGACCATCCTACCAGGT  750

seq1  GCCACACCCCTGAAGAAAACCGACTCTTCCTTACGTAGCAGCCATCAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCCTGAAGAAAACCGACTCTTCCTTACGTAGCAGCCATCAACC  800

seq1  TCCAATAACTCTTCTACTTGGGGTACAGTCTCACTCATGAGCCCCTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAACTCTTCTACTTGGGGTACAGTCTCACTCATGAGCCCCTCTCC  850

seq1  AATCCATGTTGGAATTC  866
      |||||||||||||||||
seq2  AATCCATGTTGGAATTC  867