BAC Information

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BAC

Clone NameB6Ng01-123N11
Chromosome4 (Build37)
Map Location 88,490,497 - 88,654,700
singlet/doubletdoublet
Overlap geneIfna1, Ifne1
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N11.bB6Ng01-123N11.g
ACCDH926900DH926901
length1,1051,037
definitionDH926900|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N11, 5' end.DH926901|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,653,593 - 88,654,700)(88,490,497 - 88,491,578)
sequence
gaattctacaatggtgatgacgtcagtactgcacagtggtgagtcatctg
acaatataaatttggtttctcagttgtggttgggtgggagaacctctcat
cgattccatcaagggaattactgaagatacaaattctcatgagtcctcca
tcctagatacccgcccactcactaacagtgttcagtgcctgcagtgtgcc
aggtatcgtaggtgttgagagacttggcaagctccttctcttccagtgct
tccagagagctgcaggaagaccccaaaagcacatagagcctgtgattgct
aagatgaggtcaagcatctcccaaaatacttctctgtccacatttacaag
gaggcgtacatgaatacattcagaattttaaggacatgaaaaaaaatcat
tgctatatagcacagaaaaatctcaagtataaataacaaataaatatata
agtaacaaattttaaatcaccttgaggcaaaaacaaaaagagtaaaagat
attctagagaatctaattctttcttgagttagcctttaaaccttaaatcc
cacccgctggcattaatgttttgaattgaaataatttcattttcaccttt
ctcttctccctccttttcttttgccttgttccttttaaggtgtaaagttt
tttttttttttttcttagctcagtttcaagttacagtgtatcatggcatg
gaagtctaggcatcaggagccttgaggcagccggtcatattatatccata
cacaatccatagtatgatccatatgtgatctttatgtgattcacaacatg
atccatagcatgatccagtttgacccatactgtgatctgtggtgtgatcc
acatgtgatccatactcagaaggagagagcaagaatgcatgtacagtagt
gcagtggtcagcttgcatctttaaacagtccaagactttcgtttagggga
tggccctgctgacaatgaatagatatttacctcccactaacaaagtctag
atattccccacactcactcatctcatcttggaagaatatattatttatta
tttaagcagaatttgagaccctatgatgccagtacgaatgagaagaggtt
tattt
gaattcaatattcaataagaattaatggctgacaaatatatgggcatcag
tgtgttagactgaaattgaaagtagaattacagataaatgcatatattgt
atatgatgtcctgtatatatgatctataataccattaactttatatatgc
atgtatgcatgtacatatctttactttttaaaagtacattaactttatat
atgcatgtatgtatgtacatatatatatgcacacacagctttctctctga
tagactcctagtacctccctgctgttccagatcccatccttcagtgtcct
tgtccttgtctccccctccctgatgcagaaagccccagtgtgtgtgcctc
attctctccacattacccagctttgctcactgtacagctgctctctatta
catcttgattcctgactggaggtttttttttttttttttttatgaaaata
catgactactgtggaaaccagaatgaaggagttcaaggtttgaatgaaac
tctcatgtatgagaatttcctcttaattttagacctacaacaatattctt
ctaatgacctaatgctgtttcattaaagaaaaagaaaaaagaaaggaagg
aagaaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaagaaa
gaaagaaagagagaaagaaagagagaaaggaaggagaaagacagaaaaaa
gaaagagaaagaagttgaaagaagaagagaaaggaagaaggaagagaaga
gagagagagagaaaagaaaagaagagaagagagagatagaatagagagag
agagagaagagatagaaagagggaattagagaaggaaggaagaagaagga
acgaaaccaatcttaattacgagaaaatgtcagaaaaaggcaactactgg
cttagtctgcatagaacaacagcaagttcctcatgaatcagttcctggca
gagttcctccccaataaaataacttttcccgaacttacttcagaagactc
ttatgcttcaaaccatctagaaggaaaattcctcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88653593_88654700
seq2: B6Ng01-123N11.b_50_1154 (reverse)

seq1  AAATAAACCTCTCTCCATTTCTGTACT-GCATCATTAGGGTCTC-AATTC  48
      ||||||||||||   ||||   ||||| |||||| ||||||||| |||||
seq2  AAATAAACCTCTTCTCATT--CGTACTGGCATCA-TAGGGTCTCAAATTC  47

seq1  TGCTAATATATATATAT-ATATATTCTT-CAAGATGAGAATGAGTGAGTG  96
      |||| | ||| ||| || |||||||||| ||||||||| |||||||||||
seq2  TGCTTAAATA-ATAAATAATATATTCTTCCAAGATGAG-ATGAGTGAGTG  95

seq1  TGGGGAATTATCTAGACTATGTTAGTTGGGAGGTAAATATCTATTCATTG  146
      ||||||| |||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGGGAA-TATCTAGACTTTGTTAG-TGGGAGGTAAATATCTATTCATTG  143

seq1  TCAGCAGGGCCATCCCCTAAACGGAGGTCTTGGACTGTTTAAAGATGCAA  196
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TCAGCAGGGCCATCCCCTAAACGAAAGTCTTGGACTGTTTAAAGATGCAA  193

seq1  GCTGACCACTGCACTACTGTACATGCATTCTTGCTCTCTCCTTCTGAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCACTGCACTACTGTACATGCATTCTTGCTCTCTCCTTCTGAGTA  243

seq1  TGGATCACATGTGGATCACACCACAGATCACAGTATGGGTCAAACTGGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACATGTGGATCACACCACAGATCACAGTATGGGTCAAACTGGAT  293

seq1  CATGCTATGGATCATGTTGTGAATCACATAAAGATCACATATGGATCATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATGGATCATGTTGTGAATCACATAAAGATCACATATGGATCATA  343

seq1  CTATGGATTGTGTATGGATATAATATGACCGGCTGCCTCAAGGCTCCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATTGTGTATGGATATAATATGACCGGCTGCCTCAAGGCTCCTGA  393

seq1  TGCCTAGACTTCCATGCCATGATACACTGTAACTTGAAACTGAGCTAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACTTCCATGCCATGATACACTGTAACTTGAAACTGAGCTAAGA  443

seq1  AAAAAAAAAAAAAAACTTTACACCTTAAAAGGAACAAGGCAAAAGAAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACTTTACACCTTAAAAGGAACAAGGCAAAAGAAAAG  493

seq1  GAGGGAGAAGAGAAAGGTGAAAATGAAATTATTTCAATTCAAAACATTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAGAGAAAGGTGAAAATGAAATTATTTCAATTCAAAACATTAA  543

seq1  TGCCAGCGGGTGGGATTTAAGGTTTAAAGGCTAACTCAAGAAAGAATTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCGGGTGGGATTTAAGGTTTAAAGGCTAACTCAAGAAAGAATTAG  593

seq1  ATTCTCTAGAATATCTTTTACTCTTTTTGTTTTTGCCTCAAGGTGATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAGAATATCTTTTACTCTTTTTGTTTTTGCCTCAAGGTGATTTA  643

seq1  AAATTTGTTACTTATATATTTATTTGTTATTTATACTTGAGATTTTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTACTTATATATTTATTTGTTATTTATACTTGAGATTTTTCTG  693

seq1  TGCTATATAGCAATGATTTTTTTTCATGTCCTTAAAATTCTGAATGTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATAGCAATGATTTTTTTTCATGTCCTTAAAATTCTGAATGTATT  743

seq1  CATGTACGCCTCCTTGTAAATGTGGACAGAGAAGTATTTTGGGAGATGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACGCCTCCTTGTAAATGTGGACAGAGAAGTATTTTGGGAGATGCT  793

seq1  TGACCTCATCTTAGCAATCACAGGCTCTATGTGCTTTTGGGGTCTTCCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATCTTAGCAATCACAGGCTCTATGTGCTTTTGGGGTCTTCCTG  843

seq1  CAGCTCTCTGGAAGCACTGGAAGAGAAGGAGCTTGCCAAGTCTCTCAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTGGAAGCACTGGAAGAGAAGGAGCTTGCCAAGTCTCTCAACA  893

seq1  CCTACGATACCTGGCACACTGCAGGCACTGAACACTGTTAGTGAGTGGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGATACCTGGCACACTGCAGGCACTGAACACTGTTAGTGAGTGGGC  943

seq1  GGGTATCTAGGATGGAGGACTCATGAGAATTTGTATCTTCAGTAATTCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCTAGGATGGAGGACTCATGAGAATTTGTATCTTCAGTAATTCCC  993

seq1  TTGATGGAATCGATGAGAGGTTCTCCCACCCAACCACAACTGAGAAACCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAATCGATGAGAGGTTCTCCCACCCAACCACAACTGAGAAACCA  1043

seq1  AATTTATATTGTCAGATGACTCACCACTGTGCAGTACTGACGTCATCACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATTGTCAGATGACTCACCACTGTGCAGTACTGACGTCATCACC  1093

seq1  ATTGTAGAATTC  1108
      ||||||||||||
seq2  ATTGTAGAATTC  1105

seq1: chr4_88490497_88491578
seq2: B6Ng01-123N11.g_67_1103

seq1  GAATTCAATATTCAATAAGAATTAATGGCTGACAAATATATGGGCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTCAATAAGAATTAATGGCTGACAAATATATGGGCATCAG  50

seq1  TGTGTTAGACTGAAATTGAAAGTAGAATTACAGATAAATGCATATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGACTGAAATTGAAAGTAGAATTACAGATAAATGCATATATTGT  100

seq1  ATATGATGTCCTGTATATATGATCTATAATACCATTAACTTTATATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTCCTGTATATATGATCTATAATACCATTAACTTTATATATGC  150

seq1  ATGTATGCATGTACATATCTTTACTTTTTAAAAGTACATTAACTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCATGTACATATCTTTACTTTTTAAAAGTACATTAACTTTATAT  200

seq1  ATGCATGTATGTATGTACATATATATATGCACACACAGCTTTCTCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTATGTATGTACATATATATATGCACACACAGCTTTCTCTCTGA  250

seq1  TAGACTCCTAGTACCTCCCTGCTGTTCCAGATCCCATCCTTCAGTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCTAGTACCTCCCTGCTGTTCCAGATCCCATCCTTCAGTGTCCT  300

seq1  TGTCCTTGTCTCCCCCTCCCTGATGCAGAAAGCCCCAGTGTGTGTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGTCTCCCCCTCCCTGATGCAGAAAGCCCCAGTGTGTGTGCCTC  350

seq1  ATTCTCTCCACATTACCCAGCTTTGCTCACTGTACAGCTGCTCTCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCCACATTACCCAGCTTTGCTCACTGTACAGCTGCTCTCTATTA  400

seq1  CATCTTGATTCCTGACTGGAGGTTTTTTTTTTTTTTTTTTTATGAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGATTCCTGACTGGAGGTTTTTTTTTTTTTTTTTTTATGAAAATA  450

seq1  CATGACTACTGTGGAAACCAGAATGAAGGAGTTCAAGGTTTGAATGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTACTGTGGAAACCAGAATGAAGGAGTTCAAGGTTTGAATGAAAC  500

seq1  TCTCATGTATGAGAATTTCCTCTTAATTTTAGACCTACAACAATATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTATGAGAATTTCCTCTTAATTTTAGACCTACAACAATATTCTT  550

seq1  CTAATGACCTAATGCTGTTTCATTAAAGAAAAAGAAAAAAGAAAGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACCTAATGCTGTTTCATTAAAGAAAAAGAAAAAAGAAAGGAAGG  600

seq1  AAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAA  650

seq1  GAAAGAAAGAGAGAAAGAAAGAGAGAAAGGAAGGAGAAAGACAGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAGAGAAAGAAAGAGAGAAAGGAAGGAGAAAGACAGAAAAAA  700

seq1  GAAAGAGAAAGAAGTTGAAAGAAGGAAGAGAAAGGAAGGAAGGAAGGAGA  750
      ||||||||||||||||||||||| ||||||||||||| ||||||| ||| 
seq2  GAAAGAGAAAGAAGTTGAAAGAA-GAAGAGAAAGGAA-GAAGGAA-GAG-  746

seq1  AAGAGAGAGAGAGAAGAAAAGAAAAGAAGAGAAGAGAAGAGAAGAGAAGA  800
      ||||||||||||| ||||||||||||||||||||||      |||| | |
seq2  AAGAGAGAGAGAG-AGAAAAGAAAAGAAGAGAAGAG------AGAG-ATA  788

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAAGAAGGGAAATA-AGA  849
      ||| || |||| |||| ||||||||| | |||||   |||||| || |||
seq2  GAATAG-AGAG-AGAG-AGAGAAGAG-ATAGAAA--GAGGGAATTAGAGA  832

seq1  AGAAAGGAAGGAAAGAGAGAAAGGAAACGAAAACCAAATCTTTAATTACG  899
      || |||||||  |||     |||| |||||||  | |||| |||||||||
seq2  AGGAAGGAAG--AAG-----AAGG-AACGAAA--CCAATC-TTAATTACG  871

seq1  AGAAAAATGTTCAGAAGAGAGCCACCTACTGGCCTAGTCTGCATAGAACA  949
      || |||||| |||||| | || || |||||||| ||||||||||||||||
seq2  AG-AAAATG-TCAGAA-AAAGGCAACTACTGGCTTAGTCTGCATAGAACA  918

seq1  AACCAGCAAGTTCCTCATGAATCAGTTTCTTGGCAGAGTTTCCTCCACAA  999
      |  |||||||||||||||||||||| ||| |||||||| ||||||| |||
seq2  A--CAGCAAGTTCCTCATGAATCAG-TTCCTGGCAGAG-TTCCTCCCCAA  964

seq1  TAAAATACACTTTTCCCCAGAACTGACTTCAGGAAGACTCTATTCCCTTC  1049
      ||||||| |||||||||  ||||| |||||| ||||||||| |   ||||
seq2  TAAAATA-ACTTTTCCC--GAACTTACTTCA-GAAGACTCT-TATGCTTC  1009

seq1  AAACTCATCTTAGGAAGGAAAATTCCCCTCAGG  1082
      |||| |||||   |||||||||||  |||||||
seq2  AAAC-CATCT--AGAAGGAAAATT--CCTCAGG  1037