BAC Information

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BAC

Clone NameB6Ng01-124A21
Chromosome4 (Build37)
Map Location 129,795,007 - 129,942,158
singlet/doubletdoublet
Overlap genePef1, Hcrtr1, Tinagl, Gm853, Serinc2
Upstream geneHpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1
Downstream geneFabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A21.bB6Ng01-124A21.g
ACCDH927061DH927062
length1,110263
definitionDH927061|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A21, 5' end.DH927062|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,795,007 - 129,796,122)(129,941,896 - 129,942,158)
sequence
accttactgagcaaaactggcctgatacttacatatttcattatatggat
gatatcctattatgccaagtctggcatggctgcagaagggacgatgtgac
atggttcctgcccctggagcagagccaactagacgggtcttctcaagttg
ctgtaggagcaaggcttctttgcatgacgatgtacatactttgcttcatg
ttcctcctttggagaatgttctccaggccaaggttaatgactccgcgaca
gtctgaagcagcatgattctgggatgttcctcagcaaaatgaatgctgtg
accttcaggatagtccttaaggctgtggggaagaactctgaaaacatgag
ttcaagaatatataaattagtgtaagaactattctttacaggatttttca
attgtgcagaatataaggattcagtgtgaattgtatgaggggcttcatgg
acctgaaacagagaacagaggcagctgcactagagtcagtcaggaagatg
ttaaggaaggagatgtgatttggtcaatagagggaaaaaacctgtgtaat
gagagagaaaggaatagttaaaaacaaggctcagatagatggttatatgc
catcagtagtaagatggtggtcttctccacagaagccatcaacaactaaa
tttgatccagatagtcttctaagaattataaaaaggagtcttaatgttgc
ttgtatcagcacaaacaacttactaaactaaataaaaagtttatggttca
agtaataaaagtgaagtgaaatgtagctgatcctgtgttcaaggagataa
agagatttaggaaatggtgatctcagggcaagatctcaccaagctaagct
tattgtctgtgtttgcttttgaataagaaatactttgggcttttattctg
tagtgaactacaatccagaaatagagcacactgtgatccagatctgaagc
tggaaaacacaggttttggtctggatcttaagaacagtggccatgaaagc
ttacactcaaggatggtgctacacactttattccaggagaccaaggccag
cagattctggagttcaaggccagccttggtacagagcaggtctatgtaaa
aaaagtttag
tattcatcacgactgccctctgcaggcaggtcccgggagtgcgtctcccc
tcgagggttgaagcccagggtgggactcttgtcttggccagtgcgtaagt
gtggatccatccctacgaagtcgaagtcggagagaggccgactctccctg
ggggttccgtgggcctcttagtggttctactgaagacaggaggggaaacc
gttctgggaagcagggctccacatgtagcagtattgaaatagggggtggg
tgaagaggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129795007_129796122
seq2: B6Ng01-124A21.b_35_1144

seq1  ACCTTACTGAGCAAAACTGGCCTGATACTTACATATTTCATTATATGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTGAGCAAAACTGGCCTGATACTTACATATTTCATTATATGGAT  50

seq1  GATATCCTATTATGCCAAGTCTGGCATGGCTGCAGAAGGGACGATGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCTATTATGCCAAGTCTGGCATGGCTGCAGAAGGGACGATGTGAC  100

seq1  ATGGTTCCTGCCCCTGGAGCAGAGCCAACTAGACGGGTCTTCTCAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCTGCCCCTGGAGCAGAGCCAACTAGACGGGTCTTCTCAAGTTG  150

seq1  CTGTAGGAGCAAGGCTTCTTTGCATGACGATGTACATACTTTGCTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAGCAAGGCTTCTTTGCATGACGATGTACATACTTTGCTTCATG  200

seq1  TTCCTCCTTTGGAGAATGTTCTCCAGGCCAAGGTTAATGACTCCGCGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTTGGAGAATGTTCTCCAGGCCAAGGTTAATGACTCCGCGACA  250

seq1  GTCTGAAGCAGCATGATTCTGGGATGTTCCTCAGCAAAATGAATGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGCAGCATGATTCTGGGATGTTCCTCAGCAAAATGAATGCTGTG  300

seq1  ACCTTCAGGATAGTCCTTAAGGCTGTGGGGAAGAACTCTGAAAACATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGATAGTCCTTAAGGCTGTGGGGAAGAACTCTGAAAACATGAG  350

seq1  TTCAAGAATATATAAATTAGTGTAAGAACTATTCTTTACAGGATTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATATATAAATTAGTGTAAGAACTATTCTTTACAGGATTTTTCA  400

seq1  ATTGTGCAGAATATAAGGATTCAGTGTGAATTGTATGAGGGGCTTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCAGAATATAAGGATTCAGTGTGAATTGTATGAGGGGCTTCATGG  450

seq1  ACCTGAAACAGAGAACAGAGGCAGCTGCACTAGAGTCAGTCAGGAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAACAGAGAACAGAGGCAGCTGCACTAGAGTCAGTCAGGAAGATG  500

seq1  TTAAGGAAGGAGATGTGATTTGGTCAATAGAGGGAAAAAACCTGTGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAGGAGATGTGATTTGGTCAATAGAGGGAAAAAACCTGTGTAAT  550

seq1  GAGAGAGAAAGGAATAGTTAAAAACAAGGCTCAGATAGATGGTTATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAGGAATAGTTAAAAACAAGGCTCAGATAGATGGTTATATGC  600

seq1  CATCAGTAGTAAGATGGTGGTCTTCTCCACAGAAGCCATCAACAACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGTAAGATGGTGGTCTTCTCCACAGAAGCCATCAACAACTAAA  650

seq1  TTTGATCCAGATAGTCTTCTAAGAATTATAAAAAGGAGTCTTAATGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCAGATAGTCTTCTAAGAATTATAAAAAGGAGTCTTAATGTTGC  700

seq1  TTGTATCAGCACAAACAACTTACTAAACTAAATAAAAAGTTTATGGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAGCACAAACAACTTACTAAACTAAATAAAAAGTTTATGGTTCA  750

seq1  AGTAATAAAAGTGAAGTGAAATGTAGCTGATCCTGTGTTCAAGGAGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAAAGTGAAGTGAAATGTAGCTGATCCTGTGTTCAAGGAGATAA  800

seq1  AGAGATTTAGGAAATGGTGATCTCAGGGCAAGATCTCACCAAGCTAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTAGGAAATGGTGATCTCAGGGCAAGATCTCACCAAGCTAAGCT  850

seq1  TATTGTCTGTGTTTGCTTTTGAATAAGAAATACTTTGGGCTTTTATTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTGTGTTTGCTTTTGAATAAGAAATACTTTGGGCTTTTATTCTG  900

seq1  TAGTGAACTACAATCCAGAAATAGAGCACACTTGTGATCCAGATCTTGAA  950
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TAGTGAACTACAATCCAGAAATAGAGCACAC-TGTGATCCAGATC-TGAA  948

seq1  GCTGGAAAACACAGGTTTTTGGTCTGGATCTTAAGGAACAGTGGCCATGA  1000
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  GCTGGAAAACACAGG-TTTTGGTCTGGATCTTAA-GAACAGTGGCCATGA  996

seq1  AAGCTTACACCCAGGCATGGTGCTACACACCTTTAATCCAGGAGACAAAG  1050
      |||||||||| || | ||||||||||||| ||||| |||||||||| |||
seq2  AAGCTTACACTCAAGGATGGTGCTACACA-CTTTATTCCAGGAGACCAAG  1045

seq1  GCAAGCAGATTCTGGAGTTCAAGGCCAGCC-TGGGACAGAGCAGGTTCTA  1099
      || ||||||||||||||||||||||||||| ||| |||||||||| ||||
seq2  GCCAGCAGATTCTGGAGTTCAAGGCCAGCCTTGGTACAGAGCAGG-TCTA  1094

seq1  GGTAAAGAAAAGTTTAG  1116
       ||||| ||||||||||
seq2  TGTAAA-AAAAGTTTAG  1110

seq1: chr4_129941896_129942158
seq2: B6Ng01-124A21.g_75_337 (reverse)

seq1  CCACCCCTCTTCACCCACCCCCTATTTCAATACTGCTACATGTGGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTCTTCACCCACCCCCTATTTCAATACTGCTACATGTGGAGCCC  50

seq1  TGCTTCCCAGAACGGTTTCCCCTCCTGTCTTCAGTAGAACCACTAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCAGAACGGTTTCCCCTCCTGTCTTCAGTAGAACCACTAAGAGG  100

seq1  CCCACGGAACCCCCAGGGAGAGTCGGCCTCTCTCCGACTTCGACTTCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGAACCCCCAGGGAGAGTCGGCCTCTCTCCGACTTCGACTTCGTA  150

seq1  GGGATGGATCCACACTTACGCACTGGCCAAGACAAGAGTCCCACCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGATCCACACTTACGCACTGGCCAAGACAAGAGTCCCACCCTGGG  200

seq1  CTTCAACCCTCGAGGGGAGACGCACTCCCGGGACCTGCCTGCAGAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCCTCGAGGGGAGACGCACTCCCGGGACCTGCCTGCAGAGGGCA  250

seq1  GTCGTGATGAATA  263
      |||||||||||||
seq2  GTCGTGATGAATA  263