BAC Information

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BAC

Clone NameB6Ng01-124A23
Chromosome4 (Build37)
Map Location 49,084,773 - 49,222,246
singlet/doubletdoublet
Overlap geneE130309F12Rik
Upstream geneNr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A23.bB6Ng01-124A23.g
ACCDH927065DH927066
length1,021631
definitionDH927065|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A23, 5' end.DH927066|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,084,773 - 49,085,773)(49,221,682 - 49,222,246)
sequence
gggaaggggattccggcgagaattccttccctggctctcacagtcctatc
atttgaattgtcccctgaatgtcctcttcactttggttcagaagtagtta
caagtgaaaggttcacctgaagcatcatctccccacagagacaggagatt
gcataaaggatgtcaagggtgtctgtgagcagcatgtcaagtaacttgtc
accagtttgtaagtacctgtcctcagtccctgccttgcctcactgtggtg
gccggctatttgtagtattgggagcacatcatttcgtgatcagctcaaat
aatctccatcgttttcccataatgatgtcatttcagtttttcttctgcgc
gttgtcgattccaggattccaccctcaggtggaatcgcatgagtcatcat
tgtttgcacttgtaaacagcatgtagtgtttggagttgtagaggtggatc
agtggttaaggtcactcttgttctttcggaggacttgtgtctaattccca
gcacacatgtcaggtggctcgaaacactctgtaactccagtgccaggtgt
tcactagattctagactaggctgacatcttctcacacctatgtatagaaa
tagacacaaacacgtaaataaaagtacatttttcaaaatgtttttaaagc
acttgtttatagtgttcatgccgtaggtagattttgtccacagttatgtc
tgtgactgcagcctgtcttgcatatctctccttatcctgagcaggagaaa
gcattctctctttcttcttgcctcctttgatgacaatcacaatccttttt
taagtcttccaatcatgggtattattaaaatatttcagaaattgaacatt
tgttatcgagggaaagctttagtgtaggagaatcttggtattatccttat
attccaccacaatggtaggcagaactaacttagtatacctaagaggctcc
aagaatttataatgtattatatatattatatataacgtatttaatacata
tatatgtatgtattaaaatct
gaattcagtctacacttgagctggaagcttcctccctgcattcatagcat
cagaaggagctagacaggctgccattggagaaacggcattaatgtgctta
cccatctgaggatgataccaacctgtcaggcaaggtgtgctcaccaatgc
tacaagggcatgaaggctaggagaggaaccagctggcctctgatcaggtt
tgaggctcacgccacatgaaagtattcactataaacccactaagaatccc
atggatgaacagagagcactggctactgttgttagttaaactgacgtggt
accaaactgccttctaaatatttatttttatatatatggacaaaggctac
cctcagcccttatcagaggaattgttctttttgccttgaaaggcagtcta
cctacagaggagacttattctatctccagaatgagccccttaattgcttt
ctcagagcaatgtagtcagactgaagccatctatacacagacaacataaa
caaacccatcaggttgcatttatatattagtctatgtgtatgtgtgtgtg
tgtgtgtgtttaacgataatcatggaagaaaaggctatcagttttgagaa
tggggatatggaaaaggttggagggaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49084773_49085773
seq2: B6Ng01-124A23.b_19_1021

seq1  AGAATTCC-TCCCTGGCTCTCACAGTCCTATCA-TGGAATTGTCCCCTGA  48
      |||||||| |||||||||||||||||||||||| | ||||||||||||||
seq2  AGAATTCCTTCCCTGGCTCTCACAGTCCTATCATTTGAATTGTCCCCTGA  50

seq1  ATGTCCTCTTCACTTTGGTTCAGAAGTAGTTACAAGTGAAAGGTTCACCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTTCACTTTGGTTCAGAAGTAGTTACAAGTGAAAGGTTCACCT  100

seq1  GAAGCATCATCTCCCCACAGAGACAGGAGATTGCATAAAGGATGTCAAGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCATCTCCCCACAGAGACAGGAGATTGCATAAAGGATGTCAAGG  150

seq1  GTGTCTGTGAGCAGCATGTCAAGTAACTTGTCACCAGTTTGTAAGTACCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGAGCAGCATGTCAAGTAACTTGTCACCAGTTTGTAAGTACCT  200

seq1  GTCCTCAGTCCCTGCCTTGCCTCACTGTGGTGGCCGGCTATTTGTAGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTCCCTGCCTTGCCTCACTGTGGTGGCCGGCTATTTGTAGTAT  250

seq1  TGGGAGCACATCATTTCGTGATCAGCTCAAATAATCTCCATCGTTTTCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCACATCATTTCGTGATCAGCTCAAATAATCTCCATCGTTTTCCC  300

seq1  ATAATGATGTCATTTCAGTTTTTCTTCTGCGCGTTGTCGATTCCAGGATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGTCATTTCAGTTTTTCTTCTGCGCGTTGTCGATTCCAGGATT  350

seq1  CCACCCTCAGGTGGAATCGCATGAGTCATCATTGTTTGCACTTGTAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCAGGTGGAATCGCATGAGTCATCATTGTTTGCACTTGTAAACA  400

seq1  GCATGTAGTGTTTGGAGTTGTAGAGGTGGATCAGTGGTTAAGGTCACTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGTGTTTGGAGTTGTAGAGGTGGATCAGTGGTTAAGGTCACTCT  450

seq1  TGTTCTTTCGGAGGACTTGTGTCTAATTCCCAGCACACATGTCAGGTGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCGGAGGACTTGTGTCTAATTCCCAGCACACATGTCAGGTGGC  500

seq1  TCGAAACACTCTGTAACTCCAGTGCCAGGTGTTCACTAGATTCTAGACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAACACTCTGTAACTCCAGTGCCAGGTGTTCACTAGATTCTAGACTA  550

seq1  GGCTGACATCTTCTCACACCTATGTATAGAAATAGACACAAACACGTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACATCTTCTCACACCTATGTATAGAAATAGACACAAACACGTAAA  600

seq1  TAAAAGTACATTTTTCAAAATGTTTTTAAAGCACTTGTTTATAGTGTTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACATTTTTCAAAATGTTTTTAAAGCACTTGTTTATAGTGTTCA  650

seq1  TGCCGTAGGTAGATTTTGTCCACAGTTATGTCTGTGACTGCAGCCTGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTAGGTAGATTTTGTCCACAGTTATGTCTGTGACTGCAGCCTGTCT  700

seq1  TGCATATCTCTCCTTATCCTGAGCAGGAGAAAGCATTCTCTCTTTCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATCTCTCCTTATCCTGAGCAGGAGAAAGCATTCTCTCTTTCTTCT  750

seq1  TGCCTCCTTTGATGACAATCACAATCCTTTTTCAAGTCTTCCAATCATGG  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCCTCCTTTGATGACAATCACAATCCTTTTTTAAGTCTTCCAATCATGG  800

seq1  GTATTATTAAAATA-TTCAGAAATTGAACATTTGTTATCGAGGGAAAGCT  847
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATTATTAAAATATTTCAGAAATTGAACATTTGTTATCGAGGGAAAGCT  850

seq1  TTAGTGTAGGAGAATCTTGGTAATTATCCTTATATTCCACCACAATGGTA  897
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGTGTAGGAGAATCTTGGT-ATTATCCTTATATTCCACCACAATGGTA  899

seq1  GGCAGAACTAACTTAGTATACCTAAGAGGCTCCAAGAATTTATAATGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACTAACTTAGTATACCTAAGAGGCTCCAAGAATTTATAATGTAT  949

seq1  TATATATATTATATATAACGTATTTAATACATATATATGTATGTATTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATTATATATAACGTATTTAATACATATATATGTATGTATTAAA  999

seq1  ATCT  1001
      ||||
seq2  ATCT  1003

seq1: chr4_49221682_49222246
seq2: B6Ng01-124A23.g_133_698 (reverse)

seq1  GCCCCTCCCTCCAACCTTTTCCATATCCCCATTCTC-AAACTGATAGCCT  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCCCTCCCTCCAACCTTTTCCATATCCCCATTCTCAAAACTGATAGCCT  50

seq1  TTTCTTCCATGATTATCGTTAAACACACACACACACACACATACACATAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATGATTATCGTTAAACACACACACACACACACATACACATAG  100

seq1  ACTAATATATAAATGCAACCTGATGGGTTTGTTTATGTTGTCTGTGTATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATATAAATGCAACCTGATGGGTTTGTTTATGTTGTCTGTGTATA  150

seq1  GATGGCTTCAGTCTGACTACATTGCTCTGAGAAAGCAATTAAGGGGCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTCAGTCTGACTACATTGCTCTGAGAAAGCAATTAAGGGGCTCA  200

seq1  TTCTGGAGATAGAATAAGTCTCCTCTGTAGGTAGACTGCCTTTCAAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGATAGAATAAGTCTCCTCTGTAGGTAGACTGCCTTTCAAGGCA  250

seq1  AAAAGAACAATTCCTCTGATAAGGGCTGAGGGTAGCCTTTGTCCATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAATTCCTCTGATAAGGGCTGAGGGTAGCCTTTGTCCATATAT  300

seq1  ATAAAAATAAATATTTAGAAGGCAGTTTGGTACCACGTCAGTTTAACTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAATATTTAGAAGGCAGTTTGGTACCACGTCAGTTTAACTAA  350

seq1  CAACAGTAGCCAGTGCTCTCTGTTCATCCATGGGATTCTTAGTGGGTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAGCCAGTGCTCTCTGTTCATCCATGGGATTCTTAGTGGGTTTA  400

seq1  TAGTGAATACTTTCATGTGGCGTGAGCCTCAAACCTGATCAGAGGCCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATACTTTCATGTGGCGTGAGCCTCAAACCTGATCAGAGGCCAGC  450

seq1  TGGTTCCTCTCCTAGCCTTCATGCCCTTGTAGCATTGGTGAGCACACCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCTCCTAGCCTTCATGCCCTTGTAGCATTGGTGAGCACACCTT  500

seq1  GCCTGACAGGTTGGTATCATCCTCAGATGGGTAAGCACATTAATGCCGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACAGGTTGGTATCATCCTCAGATGGGTAAGCACATTAATGCCGTT  550

seq1  TCTCCAATGGCAGCCT  565
      ||||||||||||||||
seq2  TCTCCAATGGCAGCCT  566