BAC Information

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BAC

Clone NameB6Ng01-124E23
Chromosome4 (Build37)
Map Location 52,635,160 - 52,809,005
singlet/doubletdoublet
Overlap geneLOC100040908
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E23.bB6Ng01-124E23.g
ACCDH927250DH927251
length1,0561,082
definitionDH927250|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E23, 5' end.DH927251|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,807,953 - 52,809,005)(52,635,160 - 52,636,249)
sequence
gaattctctttctacaaggttcatcttctacgtgtcagtttaaggcaaag
cattctacaaactacgtgtccatgtgatctggcacatctcagggactggg
tgaaattcaggcttgcttttaggaatttatcttggccttctctctagtgt
cactcaaagaaaatatgctgggacctaaatgtttgtgacgtatcaaaatg
cagacacgctccaatggatccatgatacatattttcttggttagcttgaa
agaattacaagagaagagggatgaagagaagaaaaatactgctaaaatcc
ataaaaatttcctacatactttcatctagaaattatcatcattaacagat
gtctgggtagtgtgcaggtgtgctttaaagtactgacagttccgttttta
cagccactctgtgtattaaccttatgtcattgtgcataaagtaatgatgc
gacccataagcaaaaggcatgtgtaagaatgctaatcacagcactatttt
tatgtgtctgctctatctgcccagtattttatattaagtattttcttgta
ttaccattttcattattcaaaagttacaacaaacaccacagcaaacagca
taattctgtcagagcattaatactttgatatatcctctatatctctacct
atatattttaaacacatatttctgtatcgtatatataatttagtattctt
ttcttcctcgctatataacgttttcttaaactttttaaatatttaggctt
tctatcatcctggccatatatattgaaattttatttcatattttagttgt
aaataagtatatccacacatagtctttcccttagtgtgccctggtggcat
gataataagtaatagcttttatttcgctggtttatgttctcagtggagaa
tgccaccttttcttggtcccagtcatcttggatgaataacaggggtgagt
gtcagcaaatctgatcattgtatatggcatcctctcactttccttcctcc
tttgcttggcaggatgacaatggtcttactcctaatactatgtgatgctg
ggtgac
gaattctttgctatatgctacaagctactggtaagtcctgacagcaacaa
tacatgggggcagaccttaaattcattaaaataagttaaaggttattttc
cttaaagacatcttctaaaataaggtgtcagctcaacatctcagattgtg
tcctcctctgttcccatcatcatgcttcatcccataaccagacaactgga
tcgtctccttgatgaaaacttaatgccatctcatctcgagagatatattg
catccacatgtgagcccagtgatttaatcttggttagtgctgtctgtgtg
cttgtcagatgggttagcaattggtcatgtatttcacagcactgctatta
aatcctctgggaattaacatgttaaatccataatcatgctttattgcctg
tataatcctaggttaactgaaaacgaagttgattcatttttcacatgttc
accaaagtgaagtcatattttttccttaactagtaattaacctttatggc
tttattaactgctttattaaatttaaatgaaatgtttattggggaaagtt
catggtaagtataaactatggtgacagtgccaccctggtaatgtcctgtt
tttttggacttctctattaaaacagtttgtattacatgggagttcatttt
tttatctgaaggtaccagcgcttgttatgaatgtgggatataataaaaaa
aaaaggaacatctttggagcaagcagatgtgtattcaaattgtatctaat
tacttactgggtttattggctgtgtgacctgggacaagctaccctatatc
tctgacctttatttctttctatgtaattatgaataataatgattgtattc
agtctgttggtgataaagaggtgaaggatttaagttgaagattatcagag
gtagttattcacataggtaattttttttattagagtctattttctggctg
aaactttcccactttgctcagttaagagaagagaaagatgattttttcca
atctctccttcatgagatggtctagcattgaaaggatcttgtggaccagg
cttcgatacttctattagaactgtttgaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52807953_52809005
seq2: B6Ng01-124E23.b_45_1100 (reverse)

seq1  GTCA-CCAGCATCACATAGTATTAGGAGTAAGACCATTGTCATCCTGCCA  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCAGCATCACATAGTATTAGGAGTAAGACCATTGTCATCCTGCCA  50

seq1  AGC-AAGGAGGAAGGAAAGATGAGA-GATGCCATATGACAATGATCAGAT  97
      ||| ||||||||||||||| ||||| |||||||||| |||||||||||||
seq2  AGCAAAGGAGGAAGGAAAG-TGAGAGGATGCCATAT-ACAATGATCAGAT  98

seq1  TTGCTGACACTCACCCCTGTTATTCATCC-AGGTGACTGGGACCAAGGAA  146
      ||||||||||||||||||||||||||||| || |||||||||||||| ||
seq2  TTGCTGACACTCACCCCTGTTATTCATCCAAGATGACTGGGACCAAGAAA  148

seq1  AGGTGGCATTCTCCACTGAGAACATAAACCAGCGAAATAAAAGCTATTAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCATTCTCCACTGAGAACATAAACCAGCGAAATAAAAGCTATTAC  198

seq1  TTATTATCATGCCACCAGGGCACACTAAGGGAAAGACTATGTGTGGATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCATGCCACCAGGGCACACTAAGGGAAAGACTATGTGTGGATAT  248

seq1  ACTTATTTACAACTAAAATATGAAATAAAATTTCAATATATATGGCCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTACAACTAAAATATGAAATAAAATTTCAATATATATGGCCAGG  298

seq1  ATGATAGAAAGCCTAAATATTTAAAAAGTTTAAGAAAACGTTATATAGCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAAAGCCTAAATATTTAAAAAGTTTAAGAAAACGTTATATAGCG  348

seq1  AGGAAGAAAAGAATACTAAATTATATATACGATACAGAAATATGTGTTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGAATACTAAATTATATATACGATACAGAAATATGTGTTTA  398

seq1  AAATATATAGGTAGAGATATAGAGGATATATCAAAGTATTAATGCTCTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAGGTAGAGATATAGAGGATATATCAAAGTATTAATGCTCTGA  448

seq1  CAGAATTATGCTGTTTGCTGTGGTGTTTGTTGTAACTTTTGAATAATGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTATGCTGTTTGCTGTGGTGTTTGTTGTAACTTTTGAATAATGAA  498

seq1  AATGGTAATACAAGAAAATACTTAATATAAAATACTGGGCAGATAGAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAATACAAGAAAATACTTAATATAAAATACTGGGCAGATAGAGCA  548

seq1  GACACATAAAAATAGTGCTGTGATTAGCATTCTTACACATGCCTTTTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAAAAATAGTGCTGTGATTAGCATTCTTACACATGCCTTTTGCT  598

seq1  TATGGGTCGCATCATTACTTTATGCACAATGACATAAGGTTAATACACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTCGCATCATTACTTTATGCACAATGACATAAGGTTAATACACAG  648

seq1  AGTGGCTGTAAAAACGGAACTGTCAGTACTTTAAAGCACACCTGCACACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTAAAAACGGAACTGTCAGTACTTTAAAGCACACCTGCACACT  698

seq1  ACCCAGACATCTGTTAATGATGATAATTTCTAGATGAAAGTATGTAGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACATCTGTTAATGATGATAATTTCTAGATGAAAGTATGTAGGAA  748

seq1  ATTTTTATGGATTTTAGCAGTATTTTTCTTCTCTTCATCCCTCTTCTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGGATTTTAGCAGTATTTTTCTTCTCTTCATCCCTCTTCTCTT  798

seq1  GTAATTCTTTCAAGCTAACCAAGAAAATATGTATCATGGATCCATTGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTTTCAAGCTAACCAAGAAAATATGTATCATGGATCCATTGGAG  848

seq1  CGTGTCTGCATTTTGATACGTCACAAACATTTAGGTCCCAGCATATTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTGCATTTTGATACGTCACAAACATTTAGGTCCCAGCATATTTTC  898

seq1  TTTGAGTGACACTAGAGAGAAGGCCAAGATAAATTCCTAAAAGCAAGCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGACACTAGAGAGAAGGCCAAGATAAATTCCTAAAAGCAAGCCT  948

seq1  GAATTTCACCCAGTCCCTGAGATGTGCCAGATCACATGGACACGTAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACCCAGTCCCTGAGATGTGCCAGATCACATGGACACGTAGTTT  998

seq1  GTAGAATGCTTTGCCTTAAACTGACAC-TAGAAGATGAACCTTGTAGAAA  1045
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGAATGCTTTGCCTTAAACTGACACGTAGAAGATGAACCTTGTAGAAA  1048

seq1  GAGAATTC  1053
      ||||||||
seq2  GAGAATTC  1056

seq1: chr4_52635160_52636249
seq2: B6Ng01-124E23.g_66_1147

seq1  GAATTCTTTGCTATATGCTACAAGCTACTGGTAAGTCCTGACAGCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTATATGCTACAAGCTACTGGTAAGTCCTGACAGCAACAA  50

seq1  TACATGGGGGCAGACCTTAAATTCATTAAAATAAGTTAAAGGTTATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGGGCAGACCTTAAATTCATTAAAATAAGTTAAAGGTTATTTTC  100

seq1  CTTAAAGACATCTTCTAAAATAAGGTGTCAGCTCAACATCTCAGATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGACATCTTCTAAAATAAGGTGTCAGCTCAACATCTCAGATTGTG  150

seq1  TCCTCCTCTGTTCCCATCATCATGCTTCATCCCATAACCAGACAACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGTTCCCATCATCATGCTTCATCCCATAACCAGACAACTGGA  200

seq1  TCGTCTCCTTGATGAAAACTTAATGCCATCTCATCTCGAGAGATATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTCCTTGATGAAAACTTAATGCCATCTCATCTCGAGAGATATATTG  250

seq1  CATCCACATGTGAGCCCAGTGATTTAATCTTGGTTAGTGCTGTCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACATGTGAGCCCAGTGATTTAATCTTGGTTAGTGCTGTCTGTGTG  300

seq1  CTTGTCAGATGGGTTAGCAATTGGTCATGTATTTCACAGCACTGCTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGATGGGTTAGCAATTGGTCATGTATTTCACAGCACTGCTATTA  350

seq1  AATCCTCTGGGAATTAACATGTTAAATCCATAATCATGCTTTATTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTGGGAATTAACATGTTAAATCCATAATCATGCTTTATTGCCTG  400

seq1  TATAATCCTAGGTTAACTGAAAACGAAGTTGATTCATTTTTCACATGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCTAGGTTAACTGAAAACGAAGTTGATTCATTTTTCACATGTTC  450

seq1  ACCAAAGTGAAGTCATATTTTTTCCTTAACTAGTAATTAACCTTTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTGAAGTCATATTTTTTCCTTAACTAGTAATTAACCTTTATGGC  500

seq1  TTTATTAACTGCTTTATTAAATTTAAATGAAATGTTTATTGGGGAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAACTGCTTTATTAAATTTAAATGAAATGTTTATTGGGGAAAGTT  550

seq1  CATGGTAAGTATAAACTATGGTGACAGTGCCACCCTGGTAATGTCCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAGTATAAACTATGGTGACAGTGCCACCCTGGTAATGTCCTGTT  600

seq1  TTTTGGAACTTCTCTATTAAAACAGTTTGTATTACAT-GGAGTTCA-TTT  648
      |||| | |||||||||||||||||||||||||||||| |||||||| |||
seq2  TTTTTGGACTTCTCTATTAAAACAGTTTGTATTACATGGGAGTTCATTTT  650

seq1  TTTATCTGAAGGTACCAGCGCTTGTAATGAATGTGGGATATAAT-AAAAA  697
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TTTATCTGAAGGTACCAGCGCTTGTTATGAATGTGGGATATAATAAAAAA  700

seq1  AAAAGGAACATCTTTGGAGGCAGGCAGATGTGTATTCAAATTTGTATCTA  747
      |||||||||||||||||| ||| ||||||||||||||||| |||||||||
seq2  AAAAGGAACATCTTTGGA-GCAAGCAGATGTGTATTCAAA-TTGTATCTA  748

seq1  ATTACTTACT-GGTTTATTGGCTGTGTGACCTTGGACAAGCTACCCTATA  796
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  ATTACTTACTGGGTTTATTGGCTGTGTGACCTGGGACAAGCTACCCTATA  798

seq1  TCTCTGAACCTTAATTTCTTTCTATGTAATTTATGAATAATAATGATTGT  846
      |||||| ||||| |||||||||||||||| ||||||||||||||||||||
seq2  TCTCTG-ACCTTTATTTCTTTCTATGTAA-TTATGAATAATAATGATTGT  846

seq1  ATTCAGTCTGTTGGTGATAAAGAAGGTGAAGGAATTAAAGTTGAAGA-TA  895
      |||||||||||||||||||||| ||||||||| ||| |||||||||| ||
seq2  ATTCAGTCTGTTGGTGATAAAG-AGGTGAAGG-ATTTAAGTTGAAGATTA  894

seq1  TCAGAGGTAGTTAATTCACAATAGGTAA-TTTTTTTATTAGAGTCTA-TT  943
      |||||||||||| |||||| |||||||| |||||||||||||||||| ||
seq2  TCAGAGGTAGTT-ATTCAC-ATAGGTAATTTTTTTTATTAGAGTCTATTT  942

seq1  TCTGGCTGAGACTTTCCCACTTTGCTCAGTTAAAAGAGAGAAGAAAAAAG  993
      ||||||||| ||||||||||||||||||||||    ||||||| | ||||
seq2  TCTGGCTGAAACTTTCCCACTTTGCTCAGTTA----AGAGAAG-AGAAAG  987

seq1  ATGA-TTTTTCCAATCTCTCCTTCATGAGATGGTCCTAGCAATGAAAGGA  1042
      |||| ||||||||||||||||||||||||||||| |||||| ||||||||
seq2  ATGATTTTTTCCAATCTCTCCTTCATGAGATGGT-CTAGCATTGAAAGGA  1036

seq1  TC-TGTGGCACAGGCTTCTGACATACTTCATTAAGAACTGTTTGAAATC  1090
      || |||||  ||||||||    |||||||  | ||||||||||||||||
seq2  TCTTGTGGACCAGGCTTC---GATACTTCTATTAGAACTGTTTGAAATC  1082