BAC Information

Click to search

BAC

Clone NameB6Ng01-124H04
Chromosome4 (Build37)
Map Location 63,546,833 - 63,722,608
singlet/doubletdoublet
Overlap geneRpl17-ps, Tnc
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124H04.bB6Ng01-124H04.g
ACCDH927354DH927355
length8711,016
definitionDH927354|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H04, 5' end.DH927355|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,721,729 - 63,722,608)(63,546,833 - 63,547,862)
sequence
gaattcactttcatttgtgttgtgagttgttcctcttgtctgatggttta
tttgggaacccaagaatctcagacggtccaggaaatttgggactcatttg
ctgccttcttcttcctttgccatgtcaagaatcctcattgcctggctttt
gaatctagaatcaagcagttctatttcctctatgcccaactctgatgcta
ggagtgcagcaaggcctgggaatgtcaggatgcatttcacactgaaaaat
aataataataataaactattcatctatcatggtacttgatattgcaagaa
ggtagtatttgttccacatttcacaaaatcctacagtttctcatgccata
atgtctcatggaaagtctatgcttaaattttgcccatgatactgtatgtt
acaatatgatattaacttcaggtcatcccgatatgaactatctgataatt
gtcacgatctttatctctctgtttgctagatcagcattattcaaatttgg
aactaatctcatttttgtgccagatagttctttttcatgagatatcatcc
tgtacactgcaaactttcagcagagtccctgacttttgtccacttgatgc
taatagcaactcaaaattgtggcagctaaaatatccataagcatcattaa
atatcactgaggatcaaattcaccccttgatgagaaatgtcctggaagaa
aagagattgtgtctgccctgcctgcagctgtgttctcaacatttactggg
acctgtgtgtatagactgaacaagcaagtaagtgaaaaaaaaaaagaatc
agaaaaagtattattgtgtcctctcctggtatccctcgctgtgtgtgtgt
gtgttgtgtgtgtgtgtgtgt
gaattcatggggctgggcatgtgaccacacaggtacatgaccacatgggc
acatgaccatctggccacttgttctctgcattttgaccagttgcatttta
cagtagtggcttctctatggttagactctggggcaagatgtaccacttcg
tttgtttaaatgtttcattttatttttgtgtggagtgtgtgcctatatgt
ggccatgtgaacttgagtgcaggtgcccatggaggctgaaagtgtcagat
gccctggagctggaattaatgaaggttgtgatccacttgacatgggtgca
gggaactgaacccagaacctgcaagagaagcaagtgctctgaatcactga
gttatctctccagcatccaaccttcccttcctgaaacattttttgagcta
acacgacaggactgcatagaatctcaggagtgggggctggttatcagaaa
accccttctgagatccagttatctttcatgtgcttttattagcaactggt
gttttattttggaaatgctggctgtggtctaaaaatgtgttatcatttcc
tgccaccatgccagcttctgagtatgtctttttatgaacaaagccaggca
tcttcgtgaaatgaaacagaaatctcttgagagcaagagattgactatgg
ctgctagtctttactgtctgatcttggaggatggaaacactgtctgttct
agaatcctatgattcctgtgaatcttttagcacacaattttacctgggtg
gtgtcatagaattatgatgagaaattcggtgagttatcggcacatgattt
aggtgtacataaagagatccattattttttacaaagggagggcctaggaa
gatttattatgtaagagagaaggaggcaggggagaaaaacccacattcag
gcatgtagaaatgaaagctcctcgtggagcatattgggtaaatggctaca
tggcattaaaaattagtttaggggcacagtgccaaggaaaacagtaacca
gccttggctttgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63721729_63722608
seq2: B6Ng01-124H04.b_47_917 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACAGCGAGGGAT  50
              ||||||||||||||||| ||||||||||||||||||||||||
seq2  --------ACACACACACACACACA-ACACACACACACACAGCGAGGGAT  41

seq1  ACCAGGAGAGGACACAATAATACTTTTTCTGATTCTTTTTTTTTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGAGGACACAATAATACTTTTTCTGATTCTTTTTTTTTTTCACT  91

seq1  TACTTGCTTGTTCAGTCTATACACACAGGTCCCAGTAAATGTTGAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTGTTCAGTCTATACACACAGGTCCCAGTAAATGTTGAGAACA  141

seq1  CAGCTGCAGGCAGGGCAGACACAATCTCTTTTCTTCCAGGACATTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGGCAGGGCAGACACAATCTCTTTTCTTCCAGGACATTTCTCA  191

seq1  TCAAGGGGTGAATTTGATCCTCAGTGATATTTAATGATGCTTATGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGTGAATTTGATCCTCAGTGATATTTAATGATGCTTATGGATAT  241

seq1  TTTAGCTGCCACAATTTTGAGTTGCTATTAGCATCAAGTGGACAAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCCACAATTTTGAGTTGCTATTAGCATCAAGTGGACAAAAGTC  291

seq1  AGGGACTCTGCTGAAAGTTTGCAGTGTACAGGATGATATCTCATGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTGCTGAAAGTTTGCAGTGTACAGGATGATATCTCATGAAAAA  341

seq1  GAACTATCTGGCACAAAAATGAGATTAGTTCCAAATTTGAATAATGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCTGGCACAAAAATGAGATTAGTTCCAAATTTGAATAATGCTGA  391

seq1  TCTAGCAAACAGAGAGATAAAGATCGTGACAATTATCAGATAGTTCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAAACAGAGAGATAAAGATCGTGACAATTATCAGATAGTTCATAT  441

seq1  CGGGATGACCTGAAGTTAATATCATATTGTAACATACAGTATCATGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATGACCTGAAGTTAATATCATATTGTAACATACAGTATCATGGGCA  491

seq1  AAATTTAAGCATAGACTTTCCATGAGACATTATGGCATGAGAAACTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGCATAGACTTTCCATGAGACATTATGGCATGAGAAACTGTAG  541

seq1  GATTTTGTGAAATGTGGAACAAATACTACCTTCTTGCAATATCAAGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTGAAATGTGGAACAAATACTACCTTCTTGCAATATCAAGTACC  591

seq1  ATGATAGATGAATAGTTTATTATTATTATTATTTTTCAGTGTGAAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGATGAATAGTTTATTATTATTATTATTTTTCAGTGTGAAATGCA  641

seq1  TCCTGACATTCCCAGGCCTTGCTGCACTCCTAGCATCAGAGTTGGGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATTCCCAGGCCTTGCTGCACTCCTAGCATCAGAGTTGGGCATA  691

seq1  GAGGAAATAGAACTGCTTGATTCTAGATTCAAAAGCCAGGCAATGAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATAGAACTGCTTGATTCTAGATTCAAAAGCCAGGCAATGAGGAT  741

seq1  TCTTGACATGGCAAAGGAAGAAGAAGGCAGCAAATGAGTCCCAAATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATGGCAAAGGAAGAAGAAGGCAGCAAATGAGTCCCAAATTTCC  791

seq1  TGGACCGTCTGAGATTCTTGGGTTCCCAAATAAACCATCAGACAAGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGTCTGAGATTCTTGGGTTCCCAAATAAACCATCAGACAAGAGGA  841

seq1  ACAACTCACAACACAAATGAAAGTGAATTC  880
      ||||||||||||||||||||||||||||||
seq2  ACAACTCACAACACAAATGAAAGTGAATTC  871

seq1: chr4_63546833_63547862
seq2: B6Ng01-124H04.g_69_1084

seq1  GAATTCATGGGGCTGGGCATGTGACCACACAGGTACATGACCACATGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGGCTGGGCATGTGACCACACAGGTACATGACCACATGGGC  50

seq1  ACATGACCATCTGGCCACTTGTTCTCTGCATTTTGACCAGTTGCATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCATCTGGCCACTTGTTCTCTGCATTTTGACCAGTTGCATTTTA  100

seq1  CAGTAGTGGCTTCTCTATGGTTAGACTCTGGGGCAAGATGTACCACTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGGCTTCTCTATGGTTAGACTCTGGGGCAAGATGTACCACTTCG  150

seq1  TTTGTTTAAATGTTTCATTTTATTTTTGTGTGGAGTGTGTGCCTATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAATGTTTCATTTTATTTTTGTGTGGAGTGTGTGCCTATATGT  200

seq1  GGCCATGTGAACTTGAGTGCAGGTGCCCATGGAGGCTGAAAGTGTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGTGAACTTGAGTGCAGGTGCCCATGGAGGCTGAAAGTGTCAGAT  250

seq1  GCCCTGGAGCTGGAATTAATGAAGGTTGTGATCCACTTGACATGGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGCTGGAATTAATGAAGGTTGTGATCCACTTGACATGGGTGCA  300

seq1  GGGAACTGAACCCAGAACCTGCAAGAGAAGCAAGTGCTCTGAATCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGAACCCAGAACCTGCAAGAGAAGCAAGTGCTCTGAATCACTGA  350

seq1  GTTATCTCTCCAGCATCCAACCTTCCCTTCCTGAAACATTTTTTGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCTCCAGCATCCAACCTTCCCTTCCTGAAACATTTTTTGAGCTA  400

seq1  ACACGACAGGACTGCATAGAATCTCAGGAGTGGGGGCTGGTTATCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACAGGACTGCATAGAATCTCAGGAGTGGGGGCTGGTTATCAGAAA  450

seq1  ACCCCTTCTGAGATCCAGTTATCTTTCATGTGCTTTTATTAGCAACTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCTGAGATCCAGTTATCTTTCATGTGCTTTTATTAGCAACTGGT  500

seq1  GTTTTATTTTGGAAATGCTGGCTGTGGTCT-AAAATGTGTTATCATTTCC  549
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTTTATTTTGGAAATGCTGGCTGTGGTCTAAAAATGTGTTATCATTTCC  550

seq1  TGCCACCATGCCAGCTTCTGAGTATGTCTTTTTATGAACAAAGCCAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATGCCAGCTTCTGAGTATGTCTTTTTATGAACAAAGCCAGGCA  600

seq1  TCTTCGTGAAATGAAACAGAAATCTCTTGAGAGCAAGAGATTGACTATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTGAAATGAAACAGAAATCTCTTGAGAGCAAGAGATTGACTATGG  650

seq1  CTGCTAGTCTTTACTGTCTGATCTTGGAGGATGGAAACACTGTCTGTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTCTTTACTGTCTGATCTTGGAGGATGGAAACACTGTCTGTTCT  700

seq1  AGAATCCTATGATTCCTGTGAATC-TTTAGCACACAATTTTACCTGGGTG  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAATCCTATGATTCCTGTGAATCTTTTAGCACACAATTTTACCTGGGTG  750

seq1  GTGTCATAGAATTATGATGAGAAATTCGGTGAGTTATCGGCACATGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATAGAATTATGATGAGAAATTCGGTGAGTTATCGGCACATGATTT  800

seq1  AGGTGTACATAAAGAGATCAATATTTTTTAACCAAGGGAGGGCCTAAGGA  848
      ||||||||||||||||||| ||  ||||| || |||||||||||| ||||
seq2  AGGTGTACATAAAGAGATCCATTATTTTTTACAAAGGGAGGGCCT-AGGA  849

seq1  AGATTTA-TATGTAAGAGAGAAGGGAGGCAGGGGGAGAAAAACCCACATT  897
      ||||||| |||||||||||||| ||||||| |||||||||||||||||||
seq2  AGATTTATTATGTAAGAGAGAA-GGAGGCA-GGGGAGAAAAACCCACATT  897

seq1  CAGGGCATGTAGAAAATGGAAAGCT-CTCGT-GAGCATATTTTGGGTAAA  945
      || ||||||||||||   ||||||| ||||| |||||||  |||||||||
seq2  CA-GGCATGTAGAAA--TGAAAGCTCCTCGTGGAGCATA--TTGGGTAAA  942

seq1  TGGCTTACATGGCATTAAAAAAAATTAGTTTAGGGGGCACAGTGCCACAG  995
      |||| |||||||||||   ||||||||||||| ||||||||||||  || 
seq2  TGGC-TACATGGCATT---AAAAATTAGTTTA-GGGGCACAGTGC--CAA  985

seq1  GGAAAACAAGTAAAACCAGCCCTGGCCTTTGCATT  1030
      ||||||| |||  |||||||| ||| |||||||||
seq2  GGAAAAC-AGT--AACCAGCCTTGG-CTTTGCATT  1016