BAC Information

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BAC

Clone NameB6Ng01-124I06
Chromosome4 (Build37)
Map Location 154,350,750 - 154,512,058
singlet/doubletdoublet
Overlap genePank4, Plch2, Pex10, Rer1, Morn1
Upstream geneBC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, LOC100043358
Downstream geneSki, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124I06.bB6Ng01-124I06.g
ACCDH927402DH927403
length869669
definitionDH927402|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I06, 5' end.DH927403|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,511,259 - 154,512,058)(154,350,750 - 154,351,419)
sequence
gaattctacctcccctgactgtctcgcccttctaaagacctgttcctggg
gagggcaggtcatgggggaggggccgtggggcctctctggagcagggtga
ctagggagtactattcctcagggtctttcccttcggaaccacatgggctc
tgctggagaacacgggcattagggcgcgcatggaggctatccacttgagg
catgagtggtctcaaactgactagacacacggcagagcctcctccgtacc
cacactgtcacctgtcccagcagcttgaggtgcagtgggggccccacatg
ggttctcagtcctagctactgttgggtggtcaggtcagctgggacacaca
ctcctgcttcctgcagcatccttcaaccgcaataccagggtgtgtttgtg
aaggacacgatggggctctgtggttcactggagagctaaggagctgtggc
cttgtgtagtgggcccgtgcagtcagagctcacggaagagcggaaacagt
aaagcagggtccaggtgatagagcttcatccagagcccggacacagaggc
gaggcctttctgcccatcgctgcatgggctcagcccttggtggctacaga
tcggggctttacaagccctgcaggagctctgagctgctaaagggggtctt
gctttggtcgttctgctcatggtagtctagcttataaaaagcagataccc
accatctctccttgtgcctagtctggcctaggggacctgaagtagggtca
gagctcagtgagtcctagatccagctagaaggaaggttgccactgggtga
gaagcataggtttcttaggtctctgaattcatctgacttccagtgcttct
gtcctcaggttctttacac
gaattccccttcccagatccctactccaaggtgagccatgtaaactacaa
tgattgtgcagaggactcaggctcattttgttgagccagcctcaggaggt
ctaagctcacactggctatgtctaggtgcacaaatctactctaggcgtgt
gttaggactcctccatccctcaggctaggacccgtgggccccttgtttcc
ctgttgtcagccaccttgcccttcctcagctgcccatgcacagtggcctc
tgggggtgcatacccggtgccctcctaactccactaagtcttgtgggccc
tagtgcctccctgcttcacccaacaccatatagacctgaggactgcccca
aatctaccagtagcctggtacccaaccctgagcgtcacctctcgggcgca
cgacaaggatgcccccttctccctggttagtgttttctccctcgagaggc
cccttcatctgctgccctgcagagacctccctagaggggctaggagtggt
gtgggcctatcttctcagtgagcaccatcatagcaacgcctgtgtgtctt
tcccacttgtgaaccataaagaaaccggactcgcattaaaacgcttgtca
cagcggggacgctctcgctggactcactaaggtgggaatatcagaagctg
ccatctgccgaaggggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154511259_154512058
seq2: B6Ng01-124I06.b_110_910 (reverse)

seq1  GTGT-AAGGACCTGAGGACAGAAGCACCTGGAGGTTCAGATGGATTCAGA  49
      |||| ||| ||||||||||||||||| ||||| | ||||||| |||||||
seq2  GTGTAAAGAACCTGAGGACAGAAGCA-CTGGAAG-TCAGATGAATTCAGA  48

seq1  GACCTAAG-AACCTGTGCTTCTCACCCATGTGGCAACCTTCCTTCTAGCC  98
      |||||||| ||||| ||||||||||||| ||||||||||||||||||| |
seq2  GACCTAAGAAACCTATGCTTCTCACCCA-GTGGCAACCTTCCTTCTAG-C  96

seq1  TGGAATCTAGGACTCACTGGGCTCTGGCCCTACTTCAGGTCCCCTAGGCC  148
      ||| ||||||||||||||| |||||| |||||||||||||||||||||||
seq2  TGG-ATCTAGGACTCACTGAGCTCTGACCCTACTTCAGGTCCCCTAGGCC  145

seq1  AGACTAGGCACAAGGAG-GATGGTGGGTATCTGC-TTTTATAAGCTAGAC  196
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  AGACTAGGCACAAGGAGAGATGGTGGGTATCTGCTTTTTATAAGCTAGAC  195

seq1  TACCATGAGCAGAACGACCAAAGCAAGACCCCCTTTAGCAGCTCAGAGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAGCAGAACGACCAAAGCAAGACCCCCTTTAGCAGCTCAGAGCT  245

seq1  CCTGCAGGGCTTGTAAAG-CCCGATCTGTAGCCACCAAGGGCTGAGCCCA  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGCAGGGCTTGTAAAGCCCCGATCTGTAGCCACCAAGGGCTGAGCCCA  295

seq1  TGCAGCGATGGGCAGAAAGGCCTCGCCTCTGTGTCCGGGCTCTGGATGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCGATGGGCAGAAAGGCCTCGCCTCTGTGTCCGGGCTCTGGATGAA  345

seq1  GCTCTATCACCTGGACCCTGCTTTACTGTTTCCGCTCTTCCGTGAGCTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCACCTGGACCCTGCTTTACTGTTTCCGCTCTTCCGTGAGCTCT  395

seq1  GACTGCACGGGCCCACTACACAAGGCCACAGCTCCTTAGCTCTCCAGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACGGGCCCACTACACAAGGCCACAGCTCCTTAGCTCTCCAGTGA  445

seq1  ACCACAGAGCCCCATCGTGTCCTTCACAAACACACCCTGGTATTGCGGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAGCCCCATCGTGTCCTTCACAAACACACCCTGGTATTGCGGTT  495

seq1  GAAGGATGCTGCAGGAAGCAGGAGTGTGTGTCCCAGCTGACCTGACCACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGCTGCAGGAAGCAGGAGTGTGTGTCCCAGCTGACCTGACCACC  545

seq1  CAACAGTAGCTAGGACTGAGAACCCATGTGGGGCCCCCACTGCACCTCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAGCTAGGACTGAGAACCCATGTGGGGCCCCCACTGCACCTCAA  595

seq1  GCTGCTGGGACAGGTGACAGTGTGGGTACGGAGGAGGCTCTGCCGTGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGACAGGTGACAGTGTGGGTACGGAGGAGGCTCTGCCGTGTGT  645

seq1  CTAGTCAGTTTGAGACCAGCCATGCCTCAAGCTGATAGCCTCCATGCGC-  694
      ||||||||||||||||||  |||||||||||  |||||||||||||||| 
seq2  CTAGTCAGTTTGAGACCACTCATGCCTCAAGTGGATAGCCTCCATGCGCG  695

seq1  CTCTAATGCCCGTGTTCTCCAGCAGAGCCCATGTGGTCTCGAAGGGAAAG  744
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CCCTAATGCCCGTGTTCTCCAGCAGAGCCCATGTGGTTCCGAAGGGAAAG  745

seq1  ACCCAGAGGAATAGTACTTACTAGTCACCCTGCTCCAGAGAGGCCCCACG  794
      |||| |||||||||||||  ||||||||||||||||||||||||||||||
seq2  ACCCTGAGGAATAGTACTCCCTAGTCACCCTGCTCCAGAGAGGCCCCACG  795

seq1  GCCCCT  800
      ||||||
seq2  GCCCCT  801

seq1: chr4_154350750_154351419
seq2: B6Ng01-124I06.g_68_736

seq1  GAATTCAACTTCCCAGATCCCTACTCCAAGGTGAGCCATGTAGACTACAA  50
      ||||||  |||||||||||||||||||||||||||||||||| |||||||
seq2  GAATTCCCCTTCCCAGATCCCTACTCCAAGGTGAGCCATGTAAACTACAA  50

seq1  GTAGGGTGCAGAGGACTCAGTAGCATTTTGTTGTGCCAGCCTCAGGAGGT  100
        |  |||||||||||||||   |||||||||| ||||||||||||||||
seq2  TGATTGTGCAGAGGACTCAGGCTCATTTTGTTGAGCCAGCCTCAGGAGGT  100

seq1  CTAAGCTCACACTGGCTAGTTCTAGGTGCACAGCTCTACTCTAGGCGTGT  150
      ||||||||||||||||||  ||||||||||||  ||||||||||||||||
seq2  CTAAGCTCACACTGGCTATGTCTAGGTGCACAAATCTACTCTAGGCGTGT  150

seq1  GTTAGCACTCCTCCATCCCTCTGGCTAGGAGCCGTGGGCCCCTTGTTTCC  200
      ||||| ||||||||||||||| |||||||| |||||||||||||||||||
seq2  GTTAGGACTCCTCCATCCCTCAGGCTAGGACCCGTGGGCCCCTTGTTTCC  200

seq1  CTGTTGTCAGCCACCTTGCCCTTCCTCAGCTGCCCATGCACAGTGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCAGCCACCTTGCCCTTCCTCAGCTGCCCATGCACAGTGGCCTC  250

seq1  TGGGGGTGCATACCCGGTGCCCTCCTAACTCCACTAAGTCTTGTGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGGGTGCATACCCGGTGCCCTCCTAACTCCACTAAGTCTTGTGGGCCC  300

seq1  GAGTGCCTCCCTGCTTCACCCAACACCAGGTAGACCTGAGGACTGCCCCA  350
       |||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  TAGTGCCTCCCTGCTTCACCCAACACCATATAGACCTGAGGACTGCCCCA  350

seq1  AATCAGTAAGTAGCCTGGTACCCAGCCCTGAGCGTCACCTCTCGGGAGCA  400
      ||||    |||||||||||||||| ||||||||||||||||||||| |||
seq2  AATCTACCAGTAGCCTGGTACCCAACCCTGAGCGTCACCTCTCGGGCGCA  400

seq1  CGACACCAAATGCCCCCTTCTCCCTGGTTAGTGTTTTCAGTCCTCGTTGA  450
      |||||    |||||||||||||||||||||||||||||   |||||  ||
seq2  CGACA-AGGATGCCCCCTTCTCCCTGGTTAGTGTTTTC-TCCCTCG-AGA  447

seq1  GGCCCCTTCATCTGCTGCCCTGCAGAGACCTCCCTAGAGGGTACAAGGAG  500
      |||||||||||||||||||||||||||||||||||||||||  | |||||
seq2  GGCCCCTTCATCTGCTGCCCTGCAGAGACCTCCCTAGAGGG-GCTAGGAG  496

seq1  TGGTGTGGGCCTACCTTCAGAGTGAGCACCAATAAAGCAACGCCTGTGTG  550
      ||||||||||||| ||||  |||||||||||  | |||||||||||||||
seq2  TGGTGTGGGCCTATCTTCTCAGTGAGCACCATCATAGCAACGCCTGTGTG  546

seq1  TCTTTCCCACAGGTGAAGCAGAAAGAAAACGGCCTCGCACTAAAATGCTT  600
      ||||||||||  ||||| || ||||||| ||| |||||| ||||| ||||
seq2  TCTTTCCCACTTGTGAACCATAAAGAAACCGGACTCGCATTAAAACGCTT  596

seq1  -TCAGAGC-GTGACGCGCTCGCTGGACTCACTAGGCTGGGAAGAGCGGCA  648
       ||| ||| | ||||| |||||||||||||||| | |||||| | | | |
seq2  GTCACAGCGGGGACGCTCTCGCTGGACTCACTAAGGTGGGAATATCAGAA  646

seq1  GCTGGC-CCTGGTGAAGGGGCTC  670
      |||| |  |||  ||||||||||
seq2  GCTGCCATCTGCCGAAGGGGCTC  669