BAC Information

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BAC

Clone NameB6Ng01-124J13
Chromosome4 (Build37)
Map Location 45,631,944 - 45,816,891
singlet/doubletdoublet
Overlap geneLOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
Downstream geneIgfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124J13.bB6Ng01-124J13.g
ACCDH927462DH927463
length320973
definitionDH927462|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J13, 5' end.DH927463|Mus musculus domesticus DNA, BAC clone: B6Ng01-124J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,631,944 - 45,632,263)(45,815,925 - 45,816,891)
sequence
caatgttaaagccacaagcatattctctcttgacacccccaattcgaccc
cctttttcttcccctttcccctttcctttctcccttctttcctctccctc
cattcccctcccccttcagccatccctgccagtgctcctggagagcagcc
ctctgagtaaatgggacaggatcttcttcctgaggtccaaggtccccttc
tagagaggagggtggtggtggtggtgaggacacagacctggatgacaaat
tccattaaagcataagccatttgtgtttgcctgttgtgtttctgactccc
agttcttcctgctaaggtgt
gaattcttctcgggaaccttgatggtgacagtcttcacctccgtgtaggc
tctgagcccgtcctcccccagctccctgccattgccagattccttaaagc
ctccgaatggcgtgtggcaggtgacaatgttataggtgttcacccacacc
gtcccagcttgcagggcctgcgtgaagtagatggccttgtccaggtctcg
ggtgaacacagccgcagccaggccatacctggtgttgttggctctctgga
ttacttcctcgatcttcttgaacttgaacagaggctgcacgggcccaaag
atctcctccttggcgatcctcatgccatcctgaacgtccccgaagactgt
gggtttgatgaagaagccgcgctcccccaaacgctccccgccacagagaa
gctttgccccttccttctgtcccagccggatgtagcccaggattcgttca
aactgctccttgtccacctgaggtccctgctgggtgtccaactcaaaggg
gttccccactttcctctgcttggccttctccacagttctctcgagaaact
cacggtagatggactcttccacgaatgtccgggagcctgcacagcagcac
tggcccatgtttgaagaaaaggggctttcgtgacactgatctacggcatg
ctccatgtcagcgtctgccagcacaatgctggggctcttcccacccagct
ccagggtgactctctttgaggttagactcgccagctgccttctgaatcag
gtggcctacctcagtggagcccgtgaaggcgacttttatccacattccat
gtgctgagcgatggcagcttcccgccgtgggggccgtagccagtgattga
tgttcacacttcctgggggaaacccgcctctttgatgagggaggcaagta
cagagcagagagtgggtctgctcagcaccttcatggaccacagtgttgcc
gtggcgagtggccgggggcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45631944_45632263
seq2: B6Ng01-124J13.b_50_369

seq1  CAATGTTAAAGCCACAAGCATATTCTCTCTTGACACCCCCAATTCGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTAAAGCCACAAGCATATTCTCTCTTGACACCCCCAATTCGACCC  50

seq1  CCTTTTTCTTCCCCTTTCCCCTTTCCTTTCTCCCTTCTTTCCTCTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTCCCCTTTCCCCTTTCCTTTCTCCCTTCTTTCCTCTCCCTC  100

seq1  CATTCCCCTCCCCCTTCAGCCATCCCTGCCAGTGCTCCTGGAGAGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCTCCCCCTTCAGCCATCCCTGCCAGTGCTCCTGGAGAGCAGCC  150

seq1  CTCTGAGTAAATGGGACAGGATCTTCTTCCTGAGGTCCAAGGTCCCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTAAATGGGACAGGATCTTCTTCCTGAGGTCCAAGGTCCCCTTC  200

seq1  TAGAGAGGAGGGTGGTGGTGGTGGTGAGGACACAGACCTGGATGACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGAGGGTGGTGGTGGTGGTGAGGACACAGACCTGGATGACAAAT  250

seq1  TCCAGGAAAGCATAAGCCAGTTGTGTTTGCCTGTTGTGTTTCTGACTCCC  300
      ||||  ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCATTAAAGCATAAGCCATTTGTGTTTGCCTGTTGTGTTTCTGACTCCC  300

seq1  AGTTCTTCCTGCTAAGGTGT  320
      ||||||||||||||||||||
seq2  AGTTCTTCCTGCTAAGGTGT  320

seq1: chr4_45815925_45816891
seq2: B6Ng01-124J13.g_69_1041 (reverse)

seq1  AGCTGGCCCCGG-CACTCGCCACGGGCAACACTGTGGT-CATGAAGGTGG  48
      ||||| |||||| |||||||||| |||||||||||||| ||||||||| |
seq2  AGCTGCCCCCGGCCACTCGCCAC-GGCAACACTGTGGTCCATGAAGGT-G  48

seq1  CAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCCCTCATCAAAGAG  98
      | ||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAGCAGA-CCCACTCTCTGCTCTGTACTT-GCCTCCCTCATCAAAGAG  96

seq1  GCGGGGTTTCCCCCAGGAGTGGTGAACATC-ATCACTGGCTACGG-CCCC  146
      || |||||||||||||||   ||||||||| |||||||||||||| ||||
seq2  GC-GGGTTTCCCCCAGGAAGTGTGAACATCAATCACTGGCTACGGCCCCC  145

seq1  ACGGCGGG-AGCTGCCATCGCTCAGCACATGG-ATGTGGAT-AAAGTCGC  193
      |||||||| ||||||||||||||||||||||| |||||||| ||||||||
seq2  ACGGCGGGAAGCTGCCATCGCTCAGCACATGGAATGTGGATAAAAGTCGC  195

seq1  CTTCACGGGCTCCACTGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGGCTCCACTGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCG  245

seq1  AGTCTAACCTC-AAGAGAGTCACCCTGGAGCTGGGTGGGAAGAGCCCCAG  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACCTCAAAGAGAGTCACCCTGGAGCTGGGTGGGAAGAGCCCCAG  295

seq1  CATTGTGCTGGCAGACGCTGACATGGAGCATGCCGTAGATCAGTGTCACG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTGGCAGACGCTGACATGGAGCATGCCGTAGATCAGTGTCACG  345

seq1  AA--GCCCTTTTCTTC-AACATGGGCCAGTGCTGCTGTGCAGGCTCCCGG  389
      ||   ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGCCCCTTTTCTTCAAACATGGGCCAGTGCTGCTGTGCAGGCTCCCGG  395

seq1  ACATTCGTGGAAGAGTCCATCTACCGTGAGTTTCTCGAGAGAACTGTGGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGTGGAAGAGTCCATCTACCGTGAGTTTCTCGAGAGAACTGTGGA  445

seq1  GAAGGCCAAGCAGAGGAAAGTGGGGAACCCCTTTGAGTTGGACACCCAGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAAGCAGAGGAAAGTGGGGAACCCCTTTGAGTTGGACACCCAGC  495

seq1  AGGGACCTCAGGTGGACAAGGAGCAGTTTGAACGAATCCTGGGCTACATC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTCAGGTGGACAAGGAGCAGTTTGAACGAATCCTGGGCTACATC  545

seq1  CGGCTGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGCGGGGAGCGTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGCGGGGAGCGTTT  595

seq1  GGGGGAGCGCGGCTTCTTCATCAAACCCACAGTCTTCGGGGACGTTCAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGCGCGGCTTCTTCATCAAACCCACAGTCTTCGGGGACGTTCAGG  645

seq1  ATGGCATGAGGATCGCCAAGGAGGAGATCTTTGGGCCCGTGCAGCCTCTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGAGGATCGCCAAGGAGGAGATCTTTGGGCCCGTGCAGCCTCTG  695

seq1  TTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAG  745

seq1  GTATGGCCTGGCTGCGGCTGTGTTCACCCGAGACCTGGACAAGGCCATCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCCTGGCTGCGGCTGTGTTCACCCGAGACCTGGACAAGGCCATCT  795

seq1  ACTTCACGCAGGCCCTGCAAGCTGGGACGGTGTGGGTGAACACCTATAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACGCAGGCCCTGCAAGCTGGGACGGTGTGGGTGAACACCTATAAC  845

seq1  ATTGTCACCTGCCACACGCCATTCGGAGGCTTTAAGGAATCTGGCAATGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACCTGCCACACGCCATTCGGAGGCTTTAAGGAATCTGGCAATGG  895

seq1  CAGGGAGCTGGGGGAGGACGGGCTCAGAGCCTACACGGAGGTGAAGACTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCTGGGGGAGGACGGGCTCAGAGCCTACACGGAGGTGAAGACTG  945

seq1  TCACCATCAAGGTTCCCGAGAAGAATTC  967
      ||||||||||||||||||||||||||||
seq2  TCACCATCAAGGTTCCCGAGAAGAATTC  973