BAC Information

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BAC

Clone NameB6Ng01-124K16
Chromosome4 (Build37)
Map Location 124,898,152 - 125,116,480
singlet/doubletdoublet
Overlap geneLOC100039298
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Downstream geneGrik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124K16.bB6Ng01-124K16.g
ACCDH927514DH927515
length116999
definitionDH927514|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K16, 5' end.DH927515|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,116,365 - 125,116,480)(124,898,152 - 124,899,150)
sequence
gaattctttgcctgctctctgttctctctcgtgttgcttttgggggtttt
atgcactcaggctctctctctctctctctctctctctctctctctgtgtg
tgtgtgtgtgtgtgtg
gaattcattagcatatctctggctcttcaggggcgaacctcacctaacca
ctgctggtgtctagccactgcttcctgactctgacccgtgtcatctcacc
acagcacatcactgttcactgaccgactgtttccagggaggaatcgagag
ctcagagatgttagatgacaaatccacagacacagagccaggaaagatca
gggcttgtctccttccagagtttccgtggacccttctcttaggaaagaga
tggcagctggggtggggcggggaggcagtgctcactctggaagacagatg
gctttccagctgcttgtagggtctgggtgctgttctagccaccaagcatg
gaatggagctagcacatctgataatacaccataggcgtgggtcatctcac
accactgccaggtgatggacagccctgggcctgacaggtcttttaagtac
cagaactggattggggcccattgcccttagaaggaggcccagcctgcaga
actgcagtcagatgtcttcctagcagctctcttccaaatgcctccgacat
acccaaatggccccttcatacacatacacccccccgctccccaacacaca
cacacccccgctcacagccggagaggtttgctcaaattaagaaatttgat
ccatttccttcagtccctctccaggggttccagagagcagaggaaaggat
gccctgtctaatgtgcaggtgcagctctgcatttggaaggagatcttgac
tagcttcagaaaaaaaaaccatccccagaatgaccctcggttcttggaga
gaaatactaacttgtgtaaacgcttatcacccccagaagcccaaagcctg
cctattgagggtcatgacaagaggagggtactgtatggattgaagtgcat
acatgcacatgctgcttggttgcacacccccctgtgtgtgctggtggtct
gggaggactttgaagtctccttacaaagacagctggatacttcttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125116365_125116480
seq2: B6Ng01-124K16.b_43_158 (reverse)

seq1  CACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGCCTGAGTGCATAAAACCCCCAAAAGCAACACGAGAGAGAACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGAGTGCATAAAACCCCCAAAAGCAACACGAGAGAGAACAGAG  100

seq1  AGCAGGCAAAGAATTC  116
      ||||||||||||||||
seq2  AGCAGGCAAAGAATTC  116

seq1: chr4_124898152_124899150
seq2: B6Ng01-124K16.g_70_1068

seq1  GAATTCATCAGCATATCTCTGGCTCTTCAGGGGCGAACCTCACCTAACCA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGCATATCTCTGGCTCTTCAGGGGCGAACCTCACCTAACCA  50

seq1  CTGCTGGTGTCTAGCCACTGCTTCCTGACTCTGACCCGTGTCATCTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTGTCTAGCCACTGCTTCCTGACTCTGACCCGTGTCATCTCACC  100

seq1  ACAGCACATCACTGTTCACTGACCGACTGTTTCCAGGGAGGAATCGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATCACTGTTCACTGACCGACTGTTTCCAGGGAGGAATCGAGAG  150

seq1  CTCAGAGATGTTAGATGACAAATCCACAGACACAGAGCCAGGAAAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATGTTAGATGACAAATCCACAGACACAGAGCCAGGAAAGATCA  200

seq1  GGGCTTGTCTCCTTCCAGAGTTTCCGTGGACCCTTCTCTTAGGAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTCTCCTTCCAGAGTTTCCGTGGACCCTTCTCTTAGGAAAGAGA  250

seq1  TGGCAGCTGGGGTGGGGCGGGGAGGCAGTGCTCACTCTGGAAGACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGGGGTGGGGCGGGGAGGCAGTGCTCACTCTGGAAGACAGATG  300

seq1  GCTTTCCAGCTGCTTGTAGGGTCTGGGTGCTGTTCTAGCCACCAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGCTGCTTGTAGGGTCTGGGTGCTGTTCTAGCCACCAAGCATG  350

seq1  GAATGGAGCTAGCACATCTGATAATACACCATAGGCGTGGGTCATCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGCTAGCACATCTGATAATACACCATAGGCGTGGGTCATCTCAC  400

seq1  ACCACTGCCAGGTGATGGACAGCCCTGGGCCTGACAGGTCTTTTAAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCAGGTGATGGACAGCCCTGGGCCTGACAGGTCTTTTAAGTAC  450

seq1  CAGAACTGGATTGGGGCCCATTGCCCTTAGAAGGAGGCCCAGCCTGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGATTGGGGCCCATTGCCCTTAGAAGGAGGCCCAGCCTGCAGA  500

seq1  ACTGCAGTCAGATGTCTTCCTAGCAGCTCTCTTCCAAATGCCTCCGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTCAGATGTCTTCCTAGCAGCTCTCTTCCAAATGCCTCCGACAT  550

seq1  ACCC-AATGGCCCCTTCATACACATACA-CCCCCCGCTCCCCAACACACA  598
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCCAAATGGCCCCTTCATACACATACACCCCCCCGCTCCCCAACACACA  600

seq1  CACA-CCCCGCTCACAGCCGGAGAGGTTTGCTCAAATTAAG-AATTTGAT  646
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACACCCCCGCTCACAGCCGGAGAGGTTTGCTCAAATTAAGAAATTTGAT  650

seq1  CCA-TTCCTTCAGTCCCTCTCCAGGGGTTCCAGAGAGCAGAGGAAAGGAT  695
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTTCAGTCCCTCTCCAGGGGTTCCAGAGAGCAGAGGAAAGGAT  700

seq1  GCCCTGTCTAATGTGCAGGTGCAGCTCTGCATTTGGAAGGAGATCTTGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCTAATGTGCAGGTGCAGCTCTGCATTTGGAAGGAGATCTTGAC  750

seq1  AAGCTTCAGGAAAAAAAAACCATCCCCAG-ATGACCCTCGGTTCTTGGAG  794
       ||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TAGCTTCA-GAAAAAAAAACCATCCCCAGAATGACCCTCGGTTCTTGGAG  799

seq1  AGAAATACTAACTTGTGTAAACGCCTATCACCCCCAGAAGCCCAAAGCCT  844
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAAATACTAACTTGTGTAAACGCTTATCACCCCCAGAAGCCCAAAGCCT  849

seq1  GCCTACTTGAGGGTCAATGACAAGAGGAAGGGTACATGTATGGATGGAAG  894
      ||||| ||||||||| ||||||||||| ||||||| ||||||||| ||||
seq2  GCCTA-TTGAGGGTC-ATGACAAGAGG-AGGGTAC-TGTATGGATTGAAG  895

seq1  TGCATACATGCACATGCATGCATGTGTGCACACACCCCTGTGTGTGCTGG  944
      ||||||||||||||||| ||| ||  ||||||| ||||||||||||||||
seq2  TGCATACATGCACATGC-TGCTTGGTTGCACACCCCCCTGTGTGTGCTGG  944

seq1  TGTTCTGGG-TGACCTTGGAGTCTCCTTCACAAGGACAGCCTGATAGCTC  993
      || ||||||  ||| ||| ||||||||| |||| ||||||  ||||  ||
seq2  TGGTCTGGGAGGACTTTGAAGTCTCCTT-ACAAAGACAGCTGGATACTTC  993

seq1  TTCCAG  999
      ||||||
seq2  TTCCAG  999