BAC Information

Click to search

BAC

Clone NameB6Ng01-124L17
Chromosome4 (Build37)4 (Build37)
Map Location 146,162,239 - 146,163,241145,040,317 - 145,041,368
singlet/doubletsingletsinglet
Overlap geneOTTMUSG00000010694
Upstream geneLOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, LOC626480
Downstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L17.bB6Ng01-124L17.g
ACCDH927564DH927565
length1,0661,038
definitionDH927564|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L17, 5' end.DH927565|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,162,239 - 146,163,241)(145,040,317 - 145,041,368)
sequence
gaattctctgatgctttctcagagtgcatttgtcagtaaagcatttgtcg
cattcactacatttgtaaggtttctcccctgaatgaattctacgatgaat
actaagatgggatggttgggtaaagcatttgtcacactcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaactctcagactgcctttg
tcagtaaagcatttgtcacattcattacatttgtaaggtttctctcctgt
atgaattctctgatgctttctcagagtgcatttgtcagtaaagcatttgt
cgcattcactacatttgtaaggtttctctcctgtatgaattctctgatgc
tttctcagagtgcatttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattgtatgatgaatactaagatgggaag
gttgggtaaagcatttgtcactttcactatatatgtaagatttctttcct
ggataaattctctgctgactttgaagattgtcactctgagtaaagcattt
gtcaaattcaccacaagtgtaagtgttcatttcactattgttttgtctag
aaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctct
atgtgggttccttgattgagactaatgatagaagacccctttaaacagtt
tacacagtctttatatgtgcaaactcctttagtggtcccagttttatgtc
tttttaggtttgaggattggagagtggcatctctgtggttagtgttataa
ggtgtactttcggaggattcatggatcacatttctaacctcattacattt
tagaagacttctttcggttatgcccatgctcattgacaatgtgctgtgtt
cttgttcagaccttctccttctcatagtttcacatatgcagtgatttctg
aaaaaggggataggatacagggattacttatatgaggaggtaagatgatc
catatccactgttctatgtattctattctccaggaaaggtttcccttttt
aatcattgcatggatc
gaattcatacaggagagaaaccttacaaatgtagtcaatgtgacaaattc
tttacccaaaaattccatcttagtattcatcagagaatccataaaggaga
gaaaccttacaaatgtagtgaatggtacaaatgctttactgaaaaagaca
tactgagaactcaacagagaattcatacaagagagaaaccttacaaatgt
agtgaatgtcacaaattctttacccgaaaatcccatcttagtattcatca
gaaatttcatagaggagagaaaccttacaaatgagagaaatctgagaaat
ggtttactaacaaagacaatctgagaattcatcagagaattcatacagta
gagaaagaaaccttacaaatagtatgtgacaaatacaatacaatgaaggc
tgagaaatcatcagttatttcatacagtagaggatctttataaagtgaat
gaagaaacttttcaaatatattgaaggtatgaatcctttactcttggcct
atttcctagaatgtaacagttaatacttacaggctagaaacttaaagcat
gcattatatgaagaaatattcttgacttcatttcaggtcagagaaaacat
ctaggaactttttaagggaaagtatttctgttgggaaaaatgtggcatat
gttttattcacagtgtcctggcaacacttgaggctccacactagagaatt
agtgtgattatgaaaatcttgtgaaaactttcatgtaatgttcaaatctt
agataatgtcaactatttatgctgtgagaaactctgaacatgtggaaatg
tagaaagcttttcatgacaccttttacttgttcatcctcaaatgttacaa
gatgaagacaagttgggaagtcagagatagtatgtgtaacactttcattg
agacagaagtaatccatttcaaagggaactatttaaggtcttataaacct
caaatatctataaactggtaacactctgtatatttattcaatggagccaa
tcgaaaaatatacctaagagtatcttggctaactgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146162239_146163241
seq2: B6Ng01-124L17.b_122_1111 (reverse)

seq1  GATCCATGCAATGATTAAAAAAAGGAAAACCTCT-CTTGAGAATATGAAT  49
      ||||||||||||||||  ||||||| |||||| | || ||||||| ||||
seq2  GATCCATGCAATGATT--AAAAAGGGAAACCTTTCCTGGAGAATA-GAAT  47

seq1  ACATAGAACAGTGATTATTGGATCATACTTA-CTCCTCATATAAGTAATC  98
      |||||||||||||  || |||||||| |||| ||||||||||||||||||
seq2  ACATAGAACAGTGGATA-TGGATCAT-CTTACCTCCTCATATAAGTAATC  95

seq1  CCTGTTATCCCTAATTCCCCCTTTTTTCAGAAAATCACTGCATATGTGGA  148
      |||| ||| ||||  |||||  |||||||| |||||||||||||||| ||
seq2  CCTG-TAT-CCTA--TCCCC--TTTTTCAG-AAATCACTGCATATGT-GA  137

seq1  AACTATGAGAAGGAGAAGGTCTTGGAACAAGAAACACAGCACATTGTCAA  198
      ||||||||||||||||||||||  ||||||| ||||||||||||||||||
seq2  AACTATGAGAAGGAGAAGGTCT--GAACAAG-AACACAGCACATTGTCAA  184

seq1  TGAGCATGGGCATAACCGAAAGAAGTCTTCT-AAATGTAATGAGGTTAGA  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGCATGGGCATAACCGAAAGAAGTCTTCTAAAATGTAATGAGGTTAGA  234

seq1  AATGTGATCCATGAATCCTCCGAAAGTACACCTTATAACACTAACCACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATCCATGAATCCTCCGAAAGTACACCTTATAACACTAACCACAG  284

seq1  AGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACCA  334

seq1  CTAAAGGAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCT  384

seq1  TCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAA  434

seq1  CAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAGACAAAACAATAGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAGACAAAACAATAGTG  484

seq1  AAATGAACACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGT  534

seq1  GACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAGAAATCTTACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAGAAATCTTACAT  584

seq1  ATATAGTGAAAGTGACAAATGCTTTACCCAACCTTCCCATCTTAGTATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGAAAGTGACAAATGCTTTACCCAACCTTCCCATCTTAGTATTC  634

seq1  ATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGAC  684

seq1  AAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATAC  734

seq1  AGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACA  784

seq1  AATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTAC  834

seq1  AAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGT  884

seq1  TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTG  934

seq1  ACAAATGCTTTACCCAACCATCCCATCTTAGTATTCATCGTAGAATTCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTTTACCCAACCATCCCATCTTAGTATTCATCGTAGAATTCAT  984

seq1  TCAGGG  1003
      ||||||
seq2  TCAGGG  990

seq1: chr4_145040317_145041368
seq2: B6Ng01-124L17.g_68_1105

seq1  GAATTCATCAGAGACTTCACACAGAAGAGAAACCTTACAAATGTCATGAA  50
                  || |||| |||| |||||||||||||||||||  | ||
seq2  ------------GAATTCATACAGGAGAGAAACCTTACAAATGTAGTCAA  38

seq1  TGTGACAAGTGCTCTCCCCAAAAATCCCATCTTAGTATTCATCAGGGAAT  100
      |||||||| | || | ||||||||| ||||||||||||||||||| ||||
seq2  TGTGACAAATTCTTTACCCAAAAATTCCATCTTAGTATTCATCAGAGAAT  88

seq1  TCATAAAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTGTA  150
       |||||||||||||||||||||||||||||||||||  ||||||||| ||
seq2  CCATAAAGGAGAGAAACCTTACAAATGTAGTGAATGGTACAAATGCTTTA  138

seq1  CCAGACAATCCAATCTTAGTATGCATCAGAGAATTCATACAGGAGAGAAA  200
      |   | ||  ||  || || |  || ||||||||||||||| ||||||||
seq2  CTGAAAAAGACATACTGAGAACTCAACAGAGAATTCATACAAGAGAGAAA  188

seq1  CCTTACAAATGTAGTGAATGTGACAAATTCTTTACCCGAAAATCCCATCT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTTACAAATGTAGTGAATGTCACAAATTCTTTACCCGAAAATCCCATCT  238

seq1  TAGTATTCATCAGAAATTTCATTCAGGAGAGAAACCTTACAAATGCAGTG  300
      ||||||||||||||||||||||  ||||||||||||||||||||| || |
seq2  TAGTATTCATCAGAAATTTCATAGAGGAGAGAAACCTTACAAATG-AGAG  287

seq1  -AATGTGAGAAATGGTTTACTAACAAAGACAATCTAAGAATTCATCAGAG  349
       ||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATCTGAGAAATGGTTTACTAACAAAGACAATCTGAGAATTCATCAGAG  337

seq1  AATTCATACAGTAGAGAAAGAAACCTTACAAATAGTTACAAACCTTACAA  399
      ||||||||||||||||||||||||||||||||||||     |  | ||||
seq2  AATTCATACAGTAGAGAAAGAAACCTTACAAATAGT-----ATGTGACAA  382

seq1  ATACAATACAATGTGAGGCTGAGAAATCATCAGTTATTTCATACAGTAGA  449
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  ATACAATACAATG-AAGGCTGAGAAATCATCAGTTATTTCATACAGTAGA  431

seq1  GGATCTTTATAAAGTGAAAGAAGAAACTTTTCAAATATATTGAAGGTATG  499
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGATCTTTATAAAGTGAATGAAGAAACTTTTCAAATATATTGAAGGTATG  481

seq1  AA--------------------TCCTAGAATGTAACAGTTAATACTTACA  529
      ||                    ||||||||||||||||||||||||||||
seq2  AATCCTTTACTCTTGGCCTATTTCCTAGAATGTAACAGTTAATACTTACA  531

seq1  GGCTAGAAACTTAACACATGCATTATATGAAGAAATATTCTTGACTTCAT  579
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAACTTAAAGCATGCATTATATGAAGAAATATTCTTGACTTCAT  581

seq1  TTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGAAAGTATTTCTGT  629
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCAGGTCAGAGAAAACATCTAGGAACTTTTTAAGGGAAAGTATTTCTGT  631

seq1  TGGGGAAAATGTGGCATATGTTTTATTCACAGTGTCCTGGCAACACTTGA  679
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAATGTGGCATATGTTTTATTCACAGTGTCCTGGCAACACTTGA  681

seq1  GGCTCCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATTTT  729
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GGCTCCACACTAGAGAATTAGTGTGATTATGAAAATCTTGTGAAAACTTT  731

seq1  CATGCAATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAA  779
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGTAATGTTCAAATCTTAGATAATGTCAACTATTTATGCTGTGAGAAA  781

seq1  CTCTGAACATGTGGAAATGTAGAAAGCTTTTCATGATACCCTTTTACTTG  829
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CTCTGAACATGTGGAAATGTAGAAAGCTTTTCATGACA-CCTTTTACTTG  830

seq1  TTCACCCTCAAATATTACAAGATGAAGACAAGTTGGGAAGTCAGAAGAGA  879
      |||| |||||||| |||||||||||||||||||||||||||||| ||| |
seq2  TTCATCCTCAAATGTTACAAGATGAAGACAAGTTGGGAAGTCAG-AGATA  879

seq1  GTATTGTGTAACACTTTCATTGAGACAGAAGTAATCCATTTCAAAAGGGA  929
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTA-TGTGTAACACTTTCATTGAGACAGAAGTAATCCATTTC-AAAGGGA  927

seq1  ACTATTTAAGGTCTTTAATAAAACCCTCAAAATATCTAATAAAACTGGTA  979
      |||||||||||||||  |||||  |||| |||||||||   |||||||||
seq2  ACTATTTAAGGTCTT--ATAAA--CCTC-AAATATCTA--TAAACTGGTA  970

seq1  ACACTCTGTATATTTAATTCAAATGACCCAATTCAGAAAAATTATACTTA  1029
      ||||||||||||||| ||||||  || |||||   |||||| ||||| | 
seq2  ACACTCTGTATATTT-ATTCAATGGAGCCAAT--CGAAAAA-TATACCT-  1015

seq1  AAAGAGTATC-TGGCAAACTGAGC  1052
       ||||||||| |||| ||||||||
seq2  -AAGAGTATCTTGGCTAACTGAGC  1038