BAC Information

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BAC

Clone NameB6Ng01-124L18
Chromosome4 (Build37)
Map Location 46,205,854 - 46,207,022
singlet/doubletsinglet
Overlap geneXpa
Upstream geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645
Downstream geneLOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L18.bB6Ng01-124L18.g
ACCDH927566DH927567
length1,1641,136
definitionDH927566|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L18, 5' end.DH927567|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcatgtcactccaaattaccaatgtccatacttcttttgtgga
aacacttaaatgctttacctggttcatgaacaatgtttccaatctcgtgt
ttctcttcttcctcttctaaaatgaagccacctttggtgtcaatcatttt
gggagctgcttttacactggccacgcctacagaaagcagagaaaggagtc
acccactgaacctggcaagcccatagactctcctgcggggaaacaggaaa
gggtgacaatgtcaccgcttcattcagactgtccttaaggtcccagctgg
tgcagcagggcacaaaagcaaaactaacaacagcaaaaacaaacaaacaa
aaacaaaacaaaaccaactagcctacaccttagaaagaagtaaaatgcca
cttcctctcacaggcggtgtgagcatgtatacaaacagccacaagaacct
accatacagtaaagaacagcctcctgaggctgtcacactgactacagcac
acaacaaaaaccaaagacaacgcagaacgctgggatgcacctgggggaac
gcacttggctgtatataaagaaatggggccttcaaagatcactcctatgg
ctataacagacctacaccaatccccaacgctcccagcacatcagaggttt
agctccaggacaaaccactcaacactactcaacagacaccacacccctag
catttctccagtgattctggccaggtgccctctacttccaatgtgatgcc
atccatctaccgggagtcggagcccacaggttgagggttcagttcccgac
tgcccaacttcagatgctaactgcagaccaggctgcagttagcctggcta
tcgactggctataaatcaggtttccaaaactgcttccctggctgtattaa
ccttctacagcaatacacacaacttgggaacctaactcactgacattcgc
ttatcattttgtgaaggattttaaatacaaatgaaaagtcagtcaaagga
cacaccaggcaagtgcagacttaaaggagttccaatatgggagctcttcc
cattctcagcccaaatgcctgacttccggaaggctatccaggtgtacagc
acacatcacattctactactatattagcttcgtgtaaaccgtcaggttcg
aagagtggaaacac
gaattcaggtccttatgcttacaggacacataagcacttcacccagtgaa
ctgttaccagtccttctacctcttttaaagctaggttttgctatgggatt
gaaactggcctcaaacccattctgtacctcaggctggccttaaactcatg
atcactgggcctcagctgaaggaaatagacgtatgtgctactatgtcagg
ctctccccttttttttttttttttaatttgtaattgtgaatgaaactgtc
cagcatggatctattagtacctgcatggcagctgggcaattaggtcattt
ccagtagtttttggtataggccatgccgccaggaaaatgtttgtaccagg
gactttttatttcttttgatatatccttgatagaaatttctgaaacaaga
tctatgagaccacagacacttttatggttctctacatttaaaaaaaaata
atttatttttatttgatgtgcataggtgttttggtcatcccattactaac
tgtaagcagccattggtctattcttgttgccatagagctatttttcatgt
tatagaattgtatggaatgaaataatgcaacatcttactactttttaatt
agtacagatcattttgacactcacccatgtagtggtaccaagtccattca
cttccaccaacttaaatggtgttctcttataagaatctgcctccagttgt
agaaaaggtgggctgtttccagttttgtctgtcacaaacagagctgtatg
aacatttgtgtaacatctttgtggtcaatacatgctttcattactcttgg
catgtcctctgctgtggtgtgtcggtttgcattttaaataactgttaggc
cttggtgcaaactttcatttccatcacatgtgccgggggtccagttgttc
tgtctccccaccaacatctgcatgctcattcttttttttttaagtatttt
attggccagcaggggaagcatggcccttttaacccgacatctaaagcaat
gcatgcaagatctcttaaaattagggcctcttggtttgaagcagtatcag
agaagactggtcattctgaagaaacctgtcttcaaaacgaaacgaacaaa
ttagtgtgttgagaatctttttgggtaaggtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_46205854_46207022
seq2: B6Ng01-124L18.b_50_1213

seq1  GAATTCTTCATGTCACTCCAAATTACCAATGTCCATACTTCTTTTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTCACTCCAAATTACCAATGTCCATACTTCTTTTGTGGA  50

seq1  AACACTTAAATGCTTTACCTGGTTCATGAACAATGTTTCCAATCTCGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTAAATGCTTTACCTGGTTCATGAACAATGTTTCCAATCTCGTGT  100

seq1  TTCTCTTCTTCCTCTTCTAAAATGAAGCCACCTTTGGTGTCAATCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTCCTCTTCTAAAATGAAGCCACCTTTGGTGTCAATCATTTT  150

seq1  GGGAGCTGCTTTTACACTGGCCACGCCTACAGAAAGCAGAGAAAGGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGCTTTTACACTGGCCACGCCTACAGAAAGCAGAGAAAGGAGTC  200

seq1  ACCCACTGAACCTGGCAAGCCCATAGACTCTCCTGCGGGGAAACAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGAACCTGGCAAGCCCATAGACTCTCCTGCGGGGAAACAGGAAA  250

seq1  GGGTGACAATGTCACCGCTTCATTCAGACTGTCCTTAAGGTCCCAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACAATGTCACCGCTTCATTCAGACTGTCCTTAAGGTCCCAGCTGG  300

seq1  TGCAGCAGGGCACAAAAGCAAAACTAACAACAGCAAAAACAAACAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGGGCACAAAAGCAAAACTAACAACAGCAAAAACAAACAAACAA  350

seq1  AAACAAAACAAAACCAACTAGCCTACACCTTAGAAAGAAGTAAAATGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACCAACTAGCCTACACCTTAGAAAGAAGTAAAATGCCA  400

seq1  CTTCCTCTCACAGGCGGTGTGAGCATGTATACAAACAGCCACAAGAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCACAGGCGGTGTGAGCATGTATACAAACAGCCACAAGAACCT  450

seq1  ACCATACAGTAAAGAACAGCCTCCTGAGGCTGTCACACTGACTACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACAGTAAAGAACAGCCTCCTGAGGCTGTCACACTGACTACAGCAC  500

seq1  ACAACAAAAACCAAAGACAACGCAGAACGCTGGGATGCACCTGGGGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAACCAAAGACAACGCAGAACGCTGGGATGCACCTGGGGGAAC  550

seq1  GCACTTGGCTGTATATAAAGAAATGGGGCCTTCAAAGATCACTCCTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGCTGTATATAAAGAAATGGGGCCTTCAAAGATCACTCCTATGG  600

seq1  CTATAACAGACCTACACCAATCCCCAACGCTCCCAGCACATCAGAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAGACCTACACCAATCCCCAACGCTCCCAGCACATCAGAGGTTT  650

seq1  AGCTCCAGGACAAACCACTCAACACTACTCAACAGACACCACACCCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGACAAACCACTCAACACTACTCAACAGACACCACACCCCTAG  700

seq1  CATTTCTCCAGTGATTCTGGCCAGGTGCCCTCTACTTCCAATGTGATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCAGTGATTCTGGCCAGGTGCCCTCTACTTCCAATGTGATGCC  750

seq1  ATCCATCTACCGGGAGTCGGAGCCCACAGGTTGAGGGTTCAGTTCCCGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTACCGGGAGTCGGAGCCCACAGGTTGAGGGTTCAGTTCCCGAC  800

seq1  TGCCCAACTTCAGATGCTAACTGCAGACCAGGCTGCAGTTAGCCTGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAACTTCAGATGCTAACTGCAGACCAGGCTGCAGTTAGCCTGGCTA  850

seq1  TCGACTGGCTATAAATCAGGTTTCCAAAACTGCTTCCCTGGCTGTAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCGACTGGCTATAAATCAGGTTTCCAAAACTGCTTCCCTGGCTGT-ATTA  899

seq1  ACCTTCTACAGCAATACACACAACTTGGGAACCTAACTCACTGACATTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTACAGCAATACACACAACTTGGGAACCTAACTCACTGACATTCG  949

seq1  CTAATCA-TTTGTGAAGGATTTTAAATACAAATGAAAAGTCAAGTCAAAG  999
      || |||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTATCATTTTGTGAAGGATTTTAAATACAAATGAAAAGTC-AGTCAAAG  998

seq1  GACACACCAGGCAAGTGCAGACCTAAAGGAGTTCCAATATGGGAGCTTCC  1049
      |||||||||||||||||||||| ||||||||||||||||||||||||  |
seq2  GACACACCAGGCAAGTGCAGACTTAAAGGAGTTCCAATATGGGAGCT--C  1046

seq1  TTCCCCATCCTCCAGCCCCAAATGCCCGACTTCCGGAGAGCTACCCAGGT  1099
      || ||||| || ||| |||||||||| ||||||||||  |||| ||||||
seq2  TT-CCCATTCT-CAG-CCCAAATGCCTGACTTCCGGAAGGCTATCCAGGT  1093

seq1  GTACAGCACACATCACATTCTACCTACTATA-TAGCTAC-AGTAAACCGC  1147
      |||||||||||||||||||||| |||||||| ||||| |  |||||||| 
seq2  GTACAGCACACATCACATTCTA-CTACTATATTAGCTTCGTGTAAACCGT  1142

seq1  CAGGTCGGAAGAGTGGAAACAC  1169
      |||||  |||||||||||||||
seq2  CAGGTTCGAAGAGTGGAAACAC  1164