BAC Information

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BAC

Clone NameB6Ng01-124M24
Chromosome4 (Build37)
Map Location 70,745,481 - 70,879,020
singlet/doubletdoublet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565
Downstream geneLOC100039979, LOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M24.bB6Ng01-124M24.g
ACCDH927620DH927621
length1,0891,144
definitionDH927620|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M24, 5' end.DH927621|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,877,922 - 70,879,020)(70,745,481 - 70,746,638)
sequence
gaattcctactaactacagagggataaggagaggaaacagaactgactta
atttatggaaaatctattctgcccaaattttgtaataaagacatactcta
tttttctgtttttatacattaaaaaagtagaacaaaaatgtgaatgacta
ataaactagggaagtaataaattcctcacactccttgttctccaacttct
tattacactagaatggcccattcacctatttcatgcttgaaaggggaatg
agcagatgtgcacagcaaagatgtgattcccacaagatacaatgtctagg
gagatgaatacatgatatgattctctactagggtttccctgtacagtact
gatcaatgatattaatttactgagttatgctatttactagagaactagtg
ggtaaaggaagattttgggaaaacatagctatgctagataataaagaata
aaaagaatacaatggggagtactgtccattcctgattttttttccagctg
tctggcactgtatttgttgcctaatttttagcacagatattttacattct
ctgcatcctcaacatttatgtatgtcaaacattgtgacaacacagctaac
attaagatagcacatgtgtccttagctttggcatatagtgccacaacact
caagaattcgactgaggagagataaactggagtaaattctagtcaccaat
ctgaatgcattgactcattgagctgatgtctatacttctgcactaatttt
ttttctaaagctttagttcttctgtatatccttaagcagtgagatagggc
actcagtcctcaaaaaagcattacagaatggtggtgtctagttattattt
tcacttcaaaaagttttgtagattcatagtatattttttttcatccttat
tctagtaacttggagccacagatcacttatatgtaccagactttatcata
taattagccatatcagaaagtgttctagctgcttataggcacttatttat
ttttattattatcttaataaggaatttttaaatttacaattccaatgcta
tcccaaaggtctcattagcttcccccaacccccacccaa
gaattctggaaactttccaaacaactcaagttgaagattctgtagacatt
ccaggggaaatatttagtattagtatgcagtgaaattttacagctttcaa
aaaatctacattaagcatacaattcaatcagaaattttatatgccaagta
ccttgtcagggctgctttaaactcttggtttcctactaggctggcataaa
tatatgttagtttaaattttcattgggtaagacaaaagtatttattaact
caattgtaaaaatttgaagtacaagaattaatttacaacgctgtcacaaa
gaacttagacgatataatgtgtgcgttggataatgtggagaggcagtttc
cattttttcaaaactacttgttttgttattatatatgtttcttttaatgg
tcattgatttattttataaatagatgcaaagtaagaggaaaataattaaa
ctttctctgaaattactctggataattattttaatgtctatagttatagc
aataacatttaggatatctcaatgagaaagagcaaaatcagtttgatcac
ttgcttgaagtactatttaagttgtttttattctgatcacatcttacatt
cctaatagagcttcttcaatttctacttgaaatttataatatttgacaat
ttttaatatatactcccagtctctgcctctacatcacaatgatcttcatt
tgactaacttctaaacatttcattcttacatttgaatttttcttcccaat
gctatggctactgttatcatatattacctacagaaatgtctacaattgaa
tcagccatgaaataaaatattcatattactgtaaaactgagaatctacat
gggggatgtgaaaattcctgaaagagactgactatttattaactgtgcag
tgatatgtacaggttttattggacatagacctgctctatgactggaaaca
taccttactctgtaaatgagtaaaatggtctcagtgacatattgttatat
tgattgatcaaccctcatcaggagaaactacttcattgaagttatctggc
atttacaaaccaccactggccacctgaaggaacttccaagggtctatcta
atgggatgtctatatcatactcgtgttcactcaaggctcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70877922_70879020
seq2: B6Ng01-124M24.b_46_1134 (reverse)

seq1  TTGGGTGGGGGGTTGGGGGGAGGCTATGGAGGACTTTTGGGATAGCATTG  50
      |||||||||||  | |||||| ||||  || ||| |||||||||||||||
seq2  TTGGGTGGGGG--TTGGGGGAAGCTAATGA-GACCTTTGGGATAGCATTG  47

seq1  GAATTGTAAATTTAAAAAATACCTAATAAAGAATAAATAAATAAAAATAA  100
      ||||||||||||| |||||| ||| || ||| ||||   |||||||||||
seq2  GAATTGTAAATTT-AAAAATTCCTTATTAAG-ATAA--TAATAAAAATAA  93

seq1  ATAAAGTGCCTATAAGCAGCTAGAACACTTTCTTGATATGGCTAATTATA  150
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AT-AAGTGCCTATAAGCAGCTAGAACACTTTC-TGATATGGCTAATTATA  141

seq1  TGATAAAGTCTGGTACATTATAAGTGATCTGTGGCTCCAAGTTACTAGAA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATAAAGTCTGGTACA-TATAAGTGATCTGTGGCTCCAAGTTACTAGAA  190

seq1  TAAGGATGAAAAAAAATATACTATGAATCTACAAAACTTTTTGAAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGAAAAAAAATATACTATGAATCTACAAAACTTTTTGAAGTGAA  240

seq1  AATAATAACTAGACACCACCATTCTGTAATGCTTTTTTGAGGACTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACTAGACACCACCATTCTGTAATGCTTTTTTGAGGACTGAGTG  290

seq1  CCCTATCTCACTGCTTAAGGATATACAGAAGAACTAAAGCTTTAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTCACTGCTTAAGGATATACAGAAGAACTAAAGCTTTAGAAAAA  340

seq1  AAATTAGTGCAGAAGTATAGACATCAGCTCAATGAGTCAATGCATTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGCAGAAGTATAGACATCAGCTCAATGAGTCAATGCATTCAGA  390

seq1  TTGGTGACTAGAATTTACTCCAGTTTATCTCTCCTCAGTCGAATTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACTAGAATTTACTCCAGTTTATCTCTCCTCAGTCGAATTCTTGA  440

seq1  GTGTTGTGGCACTATATGCCAAAGCTAAGGACACATGTGCTATCTTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGGCACTATATGCCAAAGCTAAGGACACATGTGCTATCTTAATG  490

seq1  TTAGCTGTGTTGTCACAATGTTTGACATACATAAATGTTGAGGATGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGTTGTCACAATGTTTGACATACATAAATGTTGAGGATGCAGA  540

seq1  GAATGTAAAATATCTGTGCTAAAAATTAGGCAACAAATACAGTGCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAAATATCTGTGCTAAAAATTAGGCAACAAATACAGTGCCAGAC  590

seq1  AGCTGGAAAAAAAATCAGGAATGGACAGTACTCCCCATTGTATTCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAAAAAAATCAGGAATGGACAGTACTCCCCATTGTATTCTTTTT  640

seq1  ATTCTTTATTATCTAGCATAGCTATGTTTTCCCAAAATCTTCCTTTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATTATCTAGCATAGCTATGTTTTCCCAAAATCTTCCTTTACCC  690

seq1  ACTAGTTCTCTAGTAAATAGCATAACTCAGTAAATTAATATCATTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTCTAGTAAATAGCATAACTCAGTAAATTAATATCATTGATCA  740

seq1  GTACTGTACAGGGAAACCCTAGTAGAGAATCATATCATGTATTCATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTACAGGGAAACCCTAGTAGAGAATCATATCATGTATTCATCTCC  790

seq1  CTAGACATTGTATCTTGTGGGAATCACATCTTTGCTGTGCACATCTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTGTATCTTGTGGGAATCACATCTTTGCTGTGCACATCTGCTC  840

seq1  ATTCCCCTTTCAAGCATGAAATAGGTGAATGGGCCATTCTAGTGTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTTTCAAGCATGAAATAGGTGAATGGGCCATTCTAGTGTAATAA  890

seq1  GAAGTTGGAGAACAAGGAGTGTGAGGAATTTATTACTTCCCTAGTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGAGAACAAGGAGTGTGAGGAATTTATTACTTCCCTAGTTTATT  940

seq1  AGTCATTCACATTTTTGTTCTACTTTTTTAATGTATAAAAACAGAAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCACATTTTTGTTCTACTTTTTTAATGTATAAAAACAGAAAAAT  990

seq1  AGAGTATGTCTTTATTACAAAATTTGGGCAGAATAGATTTTCCATAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTCTTTATTACAAAATTTGGGCAGAATAGATTTTCCATAAATT  1040

seq1  AAGTCAGTTCTGTTTCCTCTCCTTATCCCTCTGTAGTTAGTAGGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTTCTGTTTCCTCTCCTTATCCCTCTGTAGTTAGTAGGAATTC  1089

seq1: chr4_70745481_70746638
seq2: B6Ng01-124M24.g_66_1209

seq1  GAATTCTGGAAACTTTCCAAACAACTCAAGTTGAAGATTCTGTAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAACTTTCCAAACAACTCAAGTTGAAGATTCTGTAGACATT  50

seq1  CCAGGGGAAATATTTAGTATTAGTATGCAGTGAAATTTTACAGCTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAAATATTTAGTATTAGTATGCAGTGAAATTTTACAGCTTTCAA  100

seq1  AAAATCTACATTAAGCATACAATTCAATCAGAAATTTTATATGCCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACATTAAGCATACAATTCAATCAGAAATTTTATATGCCAAGTA  150

seq1  CCTTGTCAGGGCTGCTTTAAACTCTTGGTTTCCTACTAGGCTGGCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCAGGGCTGCTTTAAACTCTTGGTTTCCTACTAGGCTGGCATAAA  200

seq1  TATATGTTAGTTTAAATTTTCATTGGGTAAGACAAAAGTATTTATTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTAGTTTAAATTTTCATTGGGTAAGACAAAAGTATTTATTAACT  250

seq1  CAATTGTAAAAATTTGAAGTACAAGAATTAATTTACAACGCTGTCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAAAAATTTGAAGTACAAGAATTAATTTACAACGCTGTCACAAA  300

seq1  GAACTTAGACGATATAATGTGTGCGTTGGATAATGTGGAGAGGCAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGACGATATAATGTGTGCGTTGGATAATGTGGAGAGGCAGTTTC  350

seq1  CATTTTTTCAAAACTACTTGTTTTGTTATTATATATGTTTCTTTTAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCAAAACTACTTGTTTTGTTATTATATATGTTTCTTTTAATGG  400

seq1  TCATTGATTTATTTTATAAATAGATGCAAAGTAAGAGGAAAATAATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATTTATTTTATAAATAGATGCAAAGTAAGAGGAAAATAATTAAA  450

seq1  CTTTCTCTGAAATTACTCTGGATAATTATTTTAATGTCTATAGTTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGAAATTACTCTGGATAATTATTTTAATGTCTATAGTTATAGC  500

seq1  AATAACATTTAGGATATCTCAATGAGAAAGAGCAAAATCAGTTTGATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTTAGGATATCTCAATGAGAAAGAGCAAAATCAGTTTGATCAC  550

seq1  TTGCTTGAAGTACTATTTAAGTTGTTTTTATTCTGATCACATCTTACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAAGTACTATTTAAGTTGTTTTTATTCTGATCACATCTTACATT  600

seq1  CCTAATAGAGCTTCTTCAATTTCTACTTGAAATTTATAATATTTGACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGAGCTTCTTCAATTTCTACTTGAAATTTATAATATTTGACAAT  650

seq1  TTTTAATATATACTCCCAGTCTCTGCCTCTACATCACAATGATCTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATATACTCCCAGTCTCTGCCTCTACATCACAATGATCTTCATT  700

seq1  TGACTAACTTCTAAACATTTCATTCTTACATTTGAATTTTTCTTCCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACTTCTAAACATTTCATTCTTACATTTGAATTTTTCTTCCCAAT  750

seq1  GCTATGGCTACTGTTATCATATATTACCTACAGAAATGTCTACAATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGCTACTGTTATCATATATTACCTACAGAAATGTCTACAATTGAA  800

seq1  TCAGCCATGAAATAAAATATTCATATTACTGTAAAACTGAGAATCTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATGAAATAAAATATTCATATTACTGTAAAACTGAGAATCTACAT  850

seq1  GGGGGATGTGAAAAATTCCTGAAAAGAGACTGACTAATTTATTAACTGTG  900
      |||||||||| |||||||||| ||||||||||||| ||||||||||||||
seq2  GGGGGATGTG-AAAATTCCTG-AAAGAGACTGACT-ATTTATTAACTGTG  897

seq1  CAGTGATATGTACAGGTTTTATTGGACATAAGACCTGCTCTATGAACTGG  950
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  CAGTGATATGTACAGGTTTTATTGGACAT-AGACCTGCTCTATG-ACTGG  945

seq1  AAACCATACCTTACTCTGTAAATGAAGTAAAATTGGTCTCAGTGACATAT  1000
      ||| |||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AAA-CATACCTTACTCTGTAAATG-AGTAAAA-TGGTCTCAGTGACATAT  992

seq1  TGTTATATTGATTGATCAACCCTCATCAGGAGACACTACTTCA-TGAAG-  1048
      ||||||||||||||||||||||||||||||||| ||||||||| ||||| 
seq2  TGTTATATTGATTGATCAACCCTCATCAGGAGAAACTACTTCATTGAAGT  1042

seq1  TATCTGGCATTTACAAACCCAAACAACTGGCCAACATGAAAAGACTTCAC  1098
      |||||||||||||||||||   || ||||||| || ||||   |||||  
seq2  TATCTGGCATTTACAAACC---ACCACTGGCC-ACCTGAAGGAACTTCCA  1088

seq1  AGTGCTCATCCCTAAATGGGATGTCTATATCATAACTC-TGTCCCATTCA  1147
      || |   |||    ||||||||||||||||||| |||| |||  || |||
seq2  AGGGTCTATC---TAATGGGATGTCTATATCAT-ACTCGTGT-TCACTCA  1133

seq1  AGGCTCAGAGA  1158
      |||||||||||
seq2  AGGCTCAGAGA  1144