BAC Information

Click to search

BAC

Clone NameB6Ng01-124P11
Chromosome4 (Build37)
Map Location 28,958,776 - 29,097,902
singlet/doubletdoublet
Overlap geneLOC100040907
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124P11.bB6Ng01-124P11.g
ACCDH927734DH927735
length1,1831,099
definitionDH927734|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P11, 5' end.DH927735|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,096,725 - 29,097,902)(28,958,776 - 28,959,884)
sequence
gaattcttatttgtactttaattcaaatagactgttttatgtcatgatac
tgctgaaagagaggatggaatgactaaggaaagaaaggatactgattctg
ggaatactgaattaaaatgcactataaataactacctttgttagcagttt
taatgttatcctttgatctagttcttttcaggctgattcagaaagtccat
tgcaggcatccaagtagaagggcatttaatgacaagcatctattctatgg
cagtattcaatatttatttgatttaagagcattatctagtgaacacaact
actttataatgggtgaatcaatgatttatgttgagccaaaatattcatca
attaataataaagaatactgtctgcttttgcaaaaacaaagtgaacaaca
aataaacacatgcacacacaccatcaaaatatcatctcctcatttgtctc
tgacagtagacaaattacactgagacactaagtagagatattaaagctta
atgagaattacatatctgtaaaatatgaaaccagttcttccctgaactac
cgagcttttttgcaattggaaatgatatatacttcttcaatttttattct
aagtaaagttaaaattaacaaaaatgcaactaacattttttctaacagct
attttgtataacaataaatagtaactgaagcagcatagaaagtttttctt
tagttatactaaaacaattaacaaaaaaattatatgttgtagatttagta
gaaatgtcttactatatatacaatttataccattcaattgtcactaatta
atcatttcttttaatggagcaagcaatggttattaaaggttatatcctag
gacttgctatatcacagagctatgcaatagtattatataacttcaacatt
tgactatcttgtttagttccatgaacagatactgagtttagagttgtaat
gacttgtattgtatcataaactgaagctctagaaagtaagaccctcctca
tttttgcactatctagcgaagtgttctaatgtaaacaaacaggatcaatt
tacaacacatctcagggtctactaactaatcctgctttgtaacattcaaa
ctttatttcaaagtgtggaggctggctgttgagattggctgcgcgtatag
agtagtaaacctacatttggcatttttgtcttc
gaattccagcctattctttacaacttcaattaatgtctggtctcattttg
aacacctttattaatttcaacatttactaacttctataaacttgttgtta
tgatgtttcctcttgcttttgattagctgttctaagactgtatttctgtg
tactcttgggtgtagttaacctctatatactgaagattttcttatagagc
ctacaattaagctgaattagacagaaattgcttaaatttgttttcattaa
ttcactcatctgtgtgtgctttggtaatcataattgatgcacctattcat
gtcctttatatggcccttgaacatatttatatttgctactttgaagtcct
tgtcttatggttcagctaaactgcttttcctagcacctcatgggtatttc
tccaaaacttttgttttgaaaggaggctgacgtgttctgaaagaggcata
ttgtcttgattagccatgtttgtgattttatgctaggatccaccatctgt
atttatgacatttgaagtgtttcttaatgtagatatctggtcttgctttt
gtttcaggggttttccagccaagtgtttcagctctggggttactgttaaa
gaaaaatctatgtgtctatggaaactcataaaagaacagagttgggttag
taagttgaggccatagatgagaagaaatcagaacaaaaaatattacagca
atagaattaagagcaatataaaaatgttaaaaggaagacaaggctttttg
gaaagataaaattttatgacaaactcttagataagttagctaaagagtgg
gaagaagatatacattttttaaaaatagagttgacataagatatttcata
ggtactaatttagaaaatcatgaaggcataaataccttaagttgggaaat
ttgaaaaaataatgaatttctaattgcatatacataccataattaaacca
gaataaataaatatctgaaaatttcttgtaattatcattgaagatgaaaa
gtaatttttaaaatccctactaggaataagcctcaaggacaaaaatgagc
ctcattccagaatttaccgacttcaggtagaaccattttatgaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29096725_29097902
seq2: B6Ng01-124P11.b_46_1228 (reverse)

seq1  GAAGAC-AAAATGCAAAATGTAGGTTTACCTACATCTAAA--CGCAGCCA  47
      |||||| ||||||| ||||||||||||| |||| |||| |  ||||||| 
seq2  GAAGACAAAAATGCCAAATGTAGGTTTA-CTAC-TCTATACGCGCAGCC-  47

seq1  AATCT-AACAGCAAGCCT-CACACTTTGATATAA--GTTGGATGTTACAG  93
      ||||| |||||| ||||| |||||||||| ||||   ||| |||||||| 
seq2  AATCTCAACAGCCAGCCTCCACACTTTGAAATAAAGTTTGAATGTTACAA  97

seq1  AGCAGGA-TAGTTAGTAGACCCTGAGATGTGTTGT-AATTGATCCTGTTT  141
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCAGGATTAGTTAGTAGACCCTGAGATGTGTTGTAAATTGATCCTGTTT  147

seq1  GTTTACATTAG-ACACTTCGCTAGATAGTGCAGAAATGGGGAGGGTCTTT  190
      ||||||||||| |||||||||||||||||||| ||||| |||||||| ||
seq2  GTTTACATTAGAACACTTCGCTAGATAGTGCAAAAATGAGGAGGGTC-TT  196

seq1  ACTTTCTAGAGCTTCAGTTTATGATACAATACAAGTCATTACAACTCTAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGAGCTTCAGTTTATGATACAATACAAGTCATTACAACTCTAA  246

seq1  ACTCAGTATCTGTTCATGGAACTAAACAAGATAGTCAAATGTTGAAGTTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATCTGTTCATGGAACTAAACAAGATAGTCAAATGTTGAAGTTA  296

seq1  TATAATACTATTGCATAGCTCTGTGATATAGCCAAGTCCTAGGATATAAC  340
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAATACTATTGCATAGCTCTGTGATATAG-CAAGTCCTAGGATATAAC  345

seq1  CTTTAATAACCATTGCTTGCTCCATTAAAAGAAATGATTAATTAGTGACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAACCATTGCTTGCTCCATTAAAAGAAATGATTAATTAGTGACA  395

seq1  ATTGAATGGTATAAATTGTATATATAGTAAGACATTTCTACTAAATCTAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGGTATAAATTGTATATATAGTAAGACATTTCTACTAAATCTAC  445

seq1  AACATATAATTTTTTTGTTAATTGTTTTAGTATAACTAAAGAAAAACTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAATTTTTTTGTTAATTGTTTTAGTATAACTAAAGAAAAACTTT  495

seq1  CTATGCTGCTTCAGTTACTATTTATTGTTATACAAAATAGCTGTTAGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGCTTCAGTTACTATTTATTGTTATACAAAATAGCTGTTAGAAA  545

seq1  AAATGTTAGTTGCATTTTTGTTAATTTTAACTTTACTTAGAATAAAAATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGTTGCATTTTTGTTAATTTTAACTTTACTTAGAATAAAAATT  595

seq1  GAAGAAGTATATATCATTTCCAATTGCAAAAAAGCTCGGTAGTTCAGGGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTATATATCATTTCCAATTGCAAAAAAGCTCGGTAGTTCAGGGA  645

seq1  AGAACTGGTTTCATATTTTACAGATATGTAATTCTCATTAAGCTTTAATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGTTTCATATTTTACAGATATGTAATTCTCATTAAGCTTTAATA  695

seq1  TCTCTACTTAGTGTCTCAGTGTAATTTGTCTACTGTCAGAGACAAATGAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTAGTGTCTCAGTGTAATTTGTCTACTGTCAGAGACAAATGAG  745

seq1  GAGATGATATTTTGATGGTGTGTGTGCATGTGTTTATTTGTTGTTCACTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATATTTTGATGGTGTGTGTGCATGTGTTTATTTGTTGTTCACTT  795

seq1  TGTTTTTGCAAAAGCAGACAGTATTCTTTATTATTAATTGATGAATATTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCAAAAGCAGACAGTATTCTTTATTATTAATTGATGAATATTT  845

seq1  TGGCTCAACATAAATCATTGATTCACCCATTATAAAGTAGTTGTGTTCAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAACATAAATCATTGATTCACCCATTATAAAGTAGTTGTGTTCAC  895

seq1  TAGATAATGCTCTTAAATCAAATAAATATTGAATACTGCCATAGAATAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATGCTCTTAAATCAAATAAATATTGAATACTGCCATAGAATAGA  945

seq1  TGCTTGTCATTAAATGCCCTTCTACTTGGATGCCTGCAATGGACTTTCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCATTAAATGCCCTTCTACTTGGATGCCTGCAATGGACTTTCTG  995

seq1  AATCAGCCTGAAAAGAACTAGATCAAAGGATAACATTAAAACTGCTAACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCTGAAAAGAACTAGATCAAAGGATAACATTAAAACTGCTAACA  1045

seq1  AAGGTAGTTATTTATAGTGCATTTTAATTCAGTATTCCCAGAATCAGTAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTATTTATAGTGCATTTTAATTCAGTATTCCCAGAATCAGTAT  1095

seq1  CCTTTCTTTCCTTAGTCATTCCATCCTCTCTTTCAGCAGTATCATGACAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCCTTAGTCATTCCATCCTCTCTTTCAGCAGTATCATGACAT  1145

seq1  AAAACAGTCTATTTGAATTAAAGTACAAATAAGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTCTATTTGAATTAAAGTACAAATAAGAATTC  1183

seq1: chr4_28958776_28959884
seq2: B6Ng01-124P11.g_71_1169

seq1  GAATTCCAGCCTATTCTTTACAACTTCAATTAATGTCTGGTCTCATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTATTCTTTACAACTTCAATTAATGTCTGGTCTCATTTTG  50

seq1  AACACCTTTATTAATTTCAACATTTACTAACTTCTATAAACTTGTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTATTAATTTCAACATTTACTAACTTCTATAAACTTGTTGTTA  100

seq1  TGATGTTTCCTCTTGCTTTTGATTAGCTGTTCTAAGACTGTATTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCCTCTTGCTTTTGATTAGCTGTTCTAAGACTGTATTTCTGTG  150

seq1  TACTCTTGGGTGTAGTTAACCTCTATATACTGAAGATTTTCTTATAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGGGTGTAGTTAACCTCTATATACTGAAGATTTTCTTATAGAGC  200

seq1  CTACAATTAAGCTGAATTAGACAGAAATTGCTTAAATTTGTTTTCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTAAGCTGAATTAGACAGAAATTGCTTAAATTTGTTTTCATTAA  250

seq1  TTCACTCATCTGTGTGTGCTTTGGTAATCATAATTGATGCACCTATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCATCTGTGTGTGCTTTGGTAATCATAATTGATGCACCTATTCAT  300

seq1  GTCCTTTATATGGCCCTTGAACATATTTATATTTGCTACTTTGAAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATATGGCCCTTGAACATATTTATATTTGCTACTTTGAAGTCCT  350

seq1  TGTCTTATGGTTCAGCTAAACTGCTTTTCCTAGCACCTCATGGGTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATGGTTCAGCTAAACTGCTTTTCCTAGCACCTCATGGGTATTTC  400

seq1  TCCAAAACTTTTGTTTTGAAAGGAGGCTGACGTGTTCTGAAAGAGGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACTTTTGTTTTGAAAGGAGGCTGACGTGTTCTGAAAGAGGCATA  450

seq1  TTGTCTTGATTAGCCATGTTTGTGATTTTATGCTAGGATCCACCATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGATTAGCCATGTTTGTGATTTTATGCTAGGATCCACCATCTGT  500

seq1  ATTTATGACATTTGAAGTGTTTCTTAATGTAGATATCTGGTCTTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGACATTTGAAGTGTTTCTTAATGTAGATATCTGGTCTTGCTTTT  550

seq1  GTTTCAGGGGTTTTCCAGCCAAGTGTTTCAGCTCTGGGGTTACTGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGGTTTTCCAGCCAAGTGTTTCAGCTCTGGGGTTACTGTTAAA  600

seq1  GAAAAATCTATGTGTCTATGGAAACTCATAAAAGAACAGAGTTGGGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCTATGTGTCTATGGAAACTCATAAAAGAACAGAGTTGGGTTAG  650

seq1  TAAGTTGAGGCCATAGATGAGAAGAAATCAGAACAAAAAATATTACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGAGGCCATAGATGAGAAGAAATCAGAACAAAAAATATTACAGCA  700

seq1  ATAGAATTAAGAGCAATATAAAAATGTTAAAAGGAAGACAAGGCTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTAAGAGCAATATAAAAATGTTAAAAGGAAGACAAGGCTTTTTG  750

seq1  GAAAGATAAAATTTTATGACAAACTCTTAGATAAGTTAGCTAAAAGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAAGATAAAATTTTATGACAAACTCTTAGATAAGTTAGCT-AAAGAGTG  799

seq1  GGAAGAAGATATACATTTTTTAAAAATAGAGTTGACATAAAGATATTTCA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  GGAAGAAGATATACATTTTTTAAAAATAGAGTTGACAT-AAGATATTTC-  847

seq1  ATAGGTACTAATTTAGAAAATCATGAAGGCATAAATACCTTAAGTTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACTAATTTAGAAAATCATGAAGGCATAAATACCTTAAGTTGGGA  897

seq1  AATTTGAAAAAAATAATGAATTTCTAATTGCATATAACATACCATAATTA  950
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTTG-AAAAAATAATGAATTTCTAATTGCATAT-ACATACCATAATTA  945

seq1  AACCAAGAATAAATAAATAATCTGAAAAATATCTGTAATTATCATTGAGA  1000
      |||| ||||||||||||| ||||||||| |   |||||||||||||||  
seq2  AACC-AGAATAAATAAAT-ATCTGAAAATTTCTTGTAATTATCATTGAAG  993

seq1  TTGAAATAGTAATTTTTAAAATCCCTACTA-GAATAAG-CTC-AGGAC-A  1046
       ||||| ||||||||||||||||||||||| ||||||| ||| ||||| |
seq2  ATGAAA-AGTAATTTTTAAAATCCCTACTAGGAATAAGCCTCAAGGACAA  1042

seq1  AAATGAG-CTCAATCCAGAATTTTTACCAGAACTTCAAGGTAGAACCAAT  1095
      ||||||| |||| |||||||  ||||||   ||||| |||||||||||  
seq2  AAATGAGCCTCATTCCAGAA--TTTACC--GACTTC-AGGTAGAACCA--  1085

seq1  TTTAATTAAAAAAA  1109
      ||| || |||||||
seq2  TTTTATGAAAAAAA  1099