BAC Information

Click to search

BAC

Clone NameB6Ng01-125I11
Chromosome4 (Build37)
Map Location 100,346,147 - 100,471,626
singlet/doubletdoublet
Overlap geneCachd1
Upstream geneAlg6, Itgb3bp, BC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573
Downstream geneLOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I11.bB6Ng01-125I11.g
ACCDH928140DH928141
length105824
definitionDH928140|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I11, 5' end.DH928141|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,471,522 - 100,471,626)(100,346,147 - 100,346,971)
sequence
ctcccttctttgacaatgatttgtcatgtgtccctaaagtagcccatctt
tccacgtattatttgaatgagatttctttcaaataggggtgggggtgggg
aatga
gaattcaggagaagggcaggaaccacttgaaggcaaagtctatcccctca
ggctcagagccaatccctctctagctgtcagacagaagcatctatctgca
ctcaggcttaagaagactttgaggtcaaatattctccttcattcacactc
acttttcttgggttaagatttctgaggcaaggatcgctagggagatgaca
cggtagtcagagcaattgctatgcaagcatgaggacctgaacttgggtac
ccagaacccacgtcaaaaaatgccaggcttacccatgctggggcgtaact
agagacaggaagatcactgtttgccaccctgattaagcaccaagttcaac
gagagacctgtcacaggggaacatggtagaaaaagagagagagagagagg
acaccctttgaattctgcacatgcacacacgtgtgtacgtacacacatat
accacacacactgaaacttgatgtaaaggtgtctttttgaactatgaagc
tactcagcccatgtacatatttcatgtgaagacatcccaccgtctggaca
gttattaaaaacaactcctttttctactgataagaacactaaggtcagtt
tccttcaaaagctacttaatgagcacttctaaggtacgtgagggcctagc
agagtcactgcatagtggctgccctcagagaaactgcacttcatgggaag
gcaacaaggaagagggaaactactgtgcaaaggtgagctgtgaggagaca
cagcttatcctgaggaacgctttgagaatgtgtgttggatcaggccttgc
tcagctttgggagggagagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_100471522_100471626
seq2: B6Ng01-125I11.b_53_157 (reverse)

seq1  TCATTCCCCACCCCCACCCCTATTTGAAAGAAATCTCATTCAAATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCCACCCCCACCCCTATTTGAAAGAAATCTCATTCAAATAATAC  50

seq1  GTGGAAAGATGGGCTACTTTAGGGACACATGACAAATCATTGTCAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGATGGGCTACTTTAGGGACACATGACAAATCATTGTCAAAGAA  100

seq1  GGGAG  105
      |||||
seq2  GGGAG  105

seq1: chr4_100346147_100346971
seq2: B6Ng01-125I11.g_67_890

seq1  GAATTCAGGAGAAGGGCAGGAACCACTTGAAGGCAAAGTCTATCCCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAAGGGCAGGAACCACTTGAAGGCAAAGTCTATCCCCTCA  50

seq1  GGCTCAGAGCCAATCCCTCTCTAGCTGTCAGACAGAAGCATCTATCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGCCAATCCCTCTCTAGCTGTCAGACAGAAGCATCTATCTGCA  100

seq1  CTCAGGCTTAAGAAGACTTTGAGGTCAAATATTCTCCTTCATTCACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTAAGAAGACTTTGAGGTCAAATATTCTCCTTCATTCACACTC  150

seq1  ACTTTTCTTGGGTTAAGATTTCTGAGGCAAGGATCGCTAGGGAGATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTGGGTTAAGATTTCTGAGGCAAGGATCGCTAGGGAGATGACA  200

seq1  CGGTAGTCAGAGCAATTGCTATGCAAGCATGAGGACCTGAACTTGGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTCAGAGCAATTGCTATGCAAGCATGAGGACCTGAACTTGGGTAC  250

seq1  CCAGAACCCACGTCAAAAAATGCCAGGCTTACCCATGCTGGGGCGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCCACGTCAAAAAATGCCAGGCTTACCCATGCTGGGGCGTAACT  300

seq1  AGAGACAGGAAGATCACTGTTTGCCACCCTGATTAAGCACCAAGTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGAAGATCACTGTTTGCCACCCTGATTAAGCACCAAGTTCAAC  350

seq1  GAGAGACCTGTCACAGGGGAACATGGTAGAAAAAGAGAGAGAGAGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCTGTCACAGGGGAACATGGTAGAAAAAGAGAGAGAGAGAGAGG  400

seq1  ACACCCTTTGAATTCTGCACATGCACACACGTGTGTACGTACACACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTTGAATTCTGCACATGCACACACGTGTGTACGTACACACATAT  450

seq1  ACCACACACACTGAAACTTGATGTAAAGGTGTCTTTTTGAACTATGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACACTGAAACTTGATGTAAAGGTGTCTTTTTGAACTATGAAGC  500

seq1  TACTCAGCCCATGTACATATTTCATGTGAAGACATCCCACCGTCTGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCCCATGTACATATTTCATGTGAAGACATCCCACCGTCTGGACA  550

seq1  GTTATTAAAAACAACTCCTTTTTCTACTGATAAGAACACTAAGGTCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAAAACAACTCCTTTTTCTACTGATAAGAACACTAAGGTCAGTT  600

seq1  TCCTTCAAAAGCTACTTAATGAGCACTTCTAAGGTACGTGAGGGCCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAAGCTACTTAATGAGCACTTCTAAGGTACGTGAGGGCCTAGC  650

seq1  AGAGTCACTGCATAGTGGCTGCCCTCAGAGAAACTGCACTTCATGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTGCATAGTGGCTGCCCTCAGAGAAACTGCACTTCATGGGAAG  700

seq1  GCAACAAGGAAGAGGGAAACTACTGTGCAAAGGTGAGCTGTGAGGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGGAAGAGGGAAACTACTGTGCAAAGGTGAGCTGTGAGGAGACA  750

seq1  CAGCTTATCCTGAGGAACGCTTTGAGAATGTGTGTTGGATCAGGGCCTTG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCTTATCCTGAGGAACGCTTTGAGAATGTGTGTTGGATCA-GGCCTTG  799

seq1  CTCAGCTTTGGGAGGGAGAGGGGGG  825
      |||||||||||||||||||||||||
seq2  CTCAGCTTTGGGAGGGAGAGGGGGG  824