BAC Information

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BAC

Clone NameB6Ng01-125M17
Chromosome4 (Build37)
Map Location 67,425,952 - 67,549,608
singlet/doubletdoublet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M17.bB6Ng01-125M17.g
ACCDH928331DH928332
length1,1741,122
definitionDH928331|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M17, 5' end.DH928332|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,548,423 - 67,549,608)(67,425,952 - 67,427,081)
sequence
gaattcttttgtttgctcttatattatttatgtctattttatctccttgt
ttaaaagtagcttgaagtttttacactttgctatgactatgtgtttttct
gagatgctttcattgtataaatggatgctacaatttcttatttggcttca
tcattttttgtagaacttagttacagttcatttgcatgcccttatttgtg
tgtatttatttttcctgaactcttgaatatatatgtgacttagagtggca
tttactactgatcagtgctttctcactgttataattacaccctggtcaga
actgtgatggcttgctctgagatttttgaatctgatgttaatttaaattt
atctttcctctgtttctgctgtcattgtgcagtgttcatatggttctcag
ctggaggtcctgtttggtgaggattactcccttagctgccagtccttatc
tcaggactttccttcctttggctgaaatctcttgtacatttctcaaatta
acctgctgtgtttctaatgaatatttgttgactttcattagttttgagtg
ttttgttgctccctttgttttctgtcacaggcatgttgatgctatgtatc
ttctatggaagagagtctctgaaaaccttgtcaccttggttttttttttg
ttgtttttgtttttgttgttgtttttgtagatggaaacaagcttaaaatt
aaaattgttgtcactattggttctaatatctagctcctaagcttaggtgg
atatcaagcaagaatgaaaagtatgtcaacataaatgtcttcctagagtg
cccctacagtgatttcttttgattcaaaatatattgtatcttagttttcc
taacatctttcctagattcccacttttacttgtaatgaaattaatactta
ctagtaccagtcacaattctttcaatacatttccattaatatttgtttca
tctttttacttgataggtcctagactttctccttgtaattctttgcatct
ccctatgtttctttctcccatttcatctgtctctctggtcttcattaaat
tcagctgggtgtttacctatcatggcaagcaggagagatttatattaagc
cagtactagattgcctgtattattattactttaacctacaccttacctaa
atgttcttagttgcattcatttat
gaattcaccttttcctaagtccatcttctaggccttgctgggtgtcttag
ctcctgctgttccccattgcctcgggcccactcccttatgatatccaatc
aatactttttcatttttccagaaaaaaaaagttagtcaggcagtagtggc
acatactttaatctcagcacttgggaggcaaagacaggcagatatctgag
ttcaaatacggcctggtctgcagagtgagttccaggacagccagggctaa
agaaaccctgtctcaaaagaacaacaacaacaaaaaagctatagtaactg
agacaatggaccaaaatgtaaacagtttacaacacatgggtcaggaacta
agtttgatcctcagaagccttatagacacaggtattgaacgcacatctgt
aatctacacacttgtacaggaagatgagaagtgtaggcccaagagtcctt
tgaaactttcagaccagctggcctggtacaaacggtgcctaatcatagac
cctgattccacaaagggggaaattgaagatatctgagtttttcctgtgat
ctccacacacacaggctatcatacaagcccccattcacatacgacagtat
gctcacattttcatagaccaccttcaaaacacatcacagacatagacttt
tttaaatgaacctctataaaagaatcaccttcctttatattccatttata
caatagctactgtctgatatttagtctccacgttttatcaatagattttg
attgttccaatttgatcctttccactgcattttacactccatttttttac
actcagtatctgtacacacataagtactaatgggcattgctaatcttcag
tataaaagaattgaggaaagtcaaggcagccaggttgtagaaaatatgtg
ttagctttatatcattaagctactaacaaaaatgtgataggtttcagttc
gctcatgtagtggctaagagtacataggaataccaagatatgagtagtta
acatttgtaggactttaatacttacagtgcgccttttcctcctcttgcct
tattagtagaggctgtttacctaaacataaggtgccaattgactggaaag
aacaggaaaatgaagattataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67548423_67549608
seq2: B6Ng01-125M17.b_47_1220 (reverse)

seq1  ATAAATGAATGCAAACTAAGACAATATTAGTTAGTGGTAAGTGTTAAGTA  50
      |||||||||||| ||||||||  || |  || ||  ||| || | |||| 
seq2  ATAAATGAATGC-AACTAAGAACATTTAGGTAAGGTGTAGGT-TAAAGT-  47

seq1  AATAATTAATACAGCTAATCTAGTACTGACTTAATA-ATATCTTCCTTGC  99
      ||||| ||||||||  |||||||||||| ||||||| | ||||  | |||
seq2  AATAA-TAATACAGGCAATCTAGTACTGGCTTAATATAAATCTCTCCTGC  96

seq1  TTTGCAATGATAGGGTAGACA-CCAGCTGAAATTTTAATG-AGACAAGAG  147
       |||| |||||| |||| ||| |||||||||  ||||||| |||| ||||
seq2  -TTGCCATGATA-GGTAAACACCCAGCTGAA--TTTAATGAAGACCAGAG  142

seq1  AGACAGATGAAAATGGGAAGAAAGAAAACATAGGGAGAATGCAAAGAATT  197
      ||||||||| ||||||| |||||| |||||||||||| ||||||||||||
seq2  AGACAGATG-AAATGGG-AGAAAG-AAACATAGGGAG-ATGCAAAGAATT  188

seq1  TACAGGAGAAAGTCTTAGGACCTATCAAGTAAAAAAGATTGAAACAAATA  247
         ||||||||||| ||||||||||||||| ||||||| |||||||||||
seq2  ACAAGGAGAAAGTC-TAGGACCTATCAAGT-AAAAAGA-TGAAACAAATA  235

seq1  TTAATTGGAAATGTATTGAAAGAATTTGTGACTGGTACTAGTAAGTATTA  297
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAA-TGGAAATGTATTGAAAGAA-TTGTGACTGGTACTAGTAAGTATTA  283

seq1  ATTTCATTACAAGTAAAAGTGGGAATCTAGG-AAGATGTTAGGAAAACTA  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTTCATTACAAGTAAAAGTGGGAATCTAGGAAAGATGTTAGGAAAACTA  333

seq1  AGATACAATATATTTTGAATC-AAAGAAATCACTGTAGGGGCACTCTAGG  395
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGATACAATATATTTTGAATCAAAAGAAATCACTGTAGGGGCACTCTAGG  383

seq1  AAGACATTTATGTTGACATACTTTTCATTCTTGCTTGATATCCACCTAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTATGTTGACATACTTTTCATTCTTGCTTGATATCCACCTAAG  433

seq1  CTTAGGAGCTAGATATTAGAACCAATAGTGACAACAATTTTAATTTTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGCTAGATATTAGAACCAATAGTGACAACAATTTTAATTTTAAG  483

seq1  CTTGTTTCCATCTACAAAAACAACAACAAAAACAAAAACAACAAAAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCCATCTACAAAAACAACAACAAAAACAAAAACAACAAAAAAAA  533

seq1  AACCAAGGTGACAAGGTTTTCAGAGACTCTCTTCCATAGAAGATACATAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGTGACAAGGTTTTCAGAGACTCTCTTCCATAGAAGATACATAG  583

seq1  CATCAACATGCCTGTGACAGAAAACAAAGGGAGCAACAAAACACTCAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATGCCTGTGACAGAAAACAAAGGGAGCAACAAAACACTCAAAA  633

seq1  CTAATGAAAGTCAACAAATATTCATTAGAAACACAGCAGGTTAATTTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAAGTCAACAAATATTCATTAGAAACACAGCAGGTTAATTTGAG  683

seq1  AAATGTACAAGAGATTTCAGCCAAAGGAAGGAAAGTCCTGAGATAAGGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAAGAGATTTCAGCCAAAGGAAGGAAAGTCCTGAGATAAGGAC  733

seq1  TGGCAGCTAAGGGAGTAATCCTCACCAAACAGGACCTCCAGCTGAGAACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTAAGGGAGTAATCCTCACCAAACAGGACCTCCAGCTGAGAACC  783

seq1  ATATGAACACTGCACAATGACAGCAGAAACAGAGGAAAGATAAATTTAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACACTGCACAATGACAGCAGAAACAGAGGAAAGATAAATTTAAA  833

seq1  TTAACATCAGATTCAAAAATCTCAGAGCAAGCCATCACAGTTCTGACCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCAGATTCAAAAATCTCAGAGCAAGCCATCACAGTTCTGACCAG  883

seq1  GGTGTAATTATAACAGTGAGAAAGCACTGATCAGTAGTAAATGCCACTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAATTATAACAGTGAGAAAGCACTGATCAGTAGTAAATGCCACTCT  933

seq1  AAGTCACATATATATTCAAGAGTTCAGGAAAAATAAATACACACAAATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACATATATATTCAAGAGTTCAGGAAAAATAAATACACACAAATAA  983

seq1  GGGCATGCAAATGAACTGTAACTAAGTTCTACAAAAAATGATGAAGCCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCAAATGAACTGTAACTAAGTTCTACAAAAAATGATGAAGCCAA  1033

seq1  ATAAGAAATTGTAGCATCCATTTATACAATGAAAGCATCTCAGAAAAACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATTGTAGCATCCATTTATACAATGAAAGCATCTCAGAAAAACA  1083

seq1  CATAGTCATAGCAAAGTGTAAAAACTTCAAGCTACTTTTAAACAAGGAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCATAGCAAAGTGTAAAAACTTCAAGCTACTTTTAAACAAGGAGA  1133

seq1  TAAAATAGACATAAATAATATAAGAGCAAACAAAAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGACATAAATAATATAAGAGCAAACAAAAGAATTC  1174

seq1: chr4_67425952_67427081
seq2: B6Ng01-125M17.g_66_1187

seq1  GAATTCACCTTTTCCTAAGTCCATCTTCTAGGCCTTGCTGGGTGTCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTCCTAAGTCCATCTTCTAGGCCTTGCTGGGTGTCTTAG  50

seq1  CTCCTGCTGTTCCCCATTGCCTCGGGCCCACTCCCTTATGATATCCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGTTCCCCATTGCCTCGGGCCCACTCCCTTATGATATCCAATC  100

seq1  AATACTTTTTCATTTTTCCAGAAAAAAAAAGTTAGTCAGGCAGTAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTTCATTTTTCCAGAAAAAAAAAGTTAGTCAGGCAGTAGTGGC  150

seq1  ACATACTTTAATCTCAGCACTTGGGAGGCAAAGACAGGCAGATATCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTAATCTCAGCACTTGGGAGGCAAAGACAGGCAGATATCTGAG  200

seq1  TTCAAATACGGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATACGGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTAA  250

seq1  AGAAACCCTGTCTCAAAAGAACAACAACAACAAAAAAGCTATAGTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAAAAGAACAACAACAACAAAAAAGCTATAGTAACTG  300

seq1  AGACAATGGACCAAAATGTAAACAGTTTACAACACATGGGTCAGGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGACCAAAATGTAAACAGTTTACAACACATGGGTCAGGAACTA  350

seq1  AGTTTGATCCTCAGAAGCCTTATAGACACAGGTATTGAACGCACATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATCCTCAGAAGCCTTATAGACACAGGTATTGAACGCACATCTGT  400

seq1  AATCTACACACTTGTACAGGAAGATGAGAAGTGTAGGCCCAAGAGTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACACACTTGTACAGGAAGATGAGAAGTGTAGGCCCAAGAGTCCTT  450

seq1  TGAAACTTTCAGACCAGCTGGCCTGGTACAAACGGTGCCTAATCATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTCAGACCAGCTGGCCTGGTACAAACGGTGCCTAATCATAGAC  500

seq1  CCTGATTCCACAAAGGGGGAAATTGAAGATATCTGAGTTTTTCCTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCCACAAAGGGGGAAATTGAAGATATCTGAGTTTTTCCTGTGAT  550

seq1  CTCCACACACACAGGCTATCATACAAGCCCCCATTCACATACGACAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACACACAGGCTATCATACAAGCCCCCATTCACATACGACAGTAT  600

seq1  GCTCACATTTTCATAGACCACCTTCAAAACACATCACAGACATAGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTTTCATAGACCACCTTCAAAACACATCACAGACATAGACTTT  650

seq1  TTTAAATGAACCTCTATAAAAGAATCACCTTCCTTTATATTCCATTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAACCTCTATAAAAGAATCACCTTCCTTTATATTCCATTTATA  700

seq1  CAATAGCTACTGTCTGATATTTAGTCTCCACGTTTTATCAATAGATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTACTGTCTGATATTTAGTCTCCACGTTTTATCAATAGATTTTG  750

seq1  ATTGTTCCAATTTGATCCTTTCCACTGCATTTTACACTCCATTTTTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCAATTTGATCCTTTCCACTGCATTTTACACTCCATTTTTTTAC  800

seq1  ACTCAGTATCTGTACACACATAAGTACTAATGGGCATTGCTAATCTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATCTGTACACACATAAGTACTAATGGGCATTGCTAATCTTCAG  850

seq1  TATAAAAGAATTGAGGAAAGTCAAGGCAGCCAGGTTGTAG-AAATATGTG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATAAAAGAATTGAGGAAAGTCAAGGCAGCCAGGTTGTAGAAAATATGTG  900

seq1  TTAGCTTTATATCATTAAGCTACTAACAAAAATGTGATAAGTTTCAGTTC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAGCTTTATATCATTAAGCTACTAACAAAAATGTGATAGGTTTCAGTTC  950

seq1  GCTCATGTAAGTGGCTAAAGAGTACATA-GAATACCAAGATATGAGTAAG  998
      |||||||| ||||||| ||||||||||| |||||||||||||||||| ||
seq2  GCTCATGT-AGTGGCT-AAGAGTACATAGGAATACCAAGATATGAGT-AG  997

seq1  TTAACATATGTA-GACTTTAAATACTTACAAGTGCGCTTTTTCCTTCCTC  1047
      ||||||| |||| |||||| ||||||||| ||||||| |||||| |||||
seq2  TTAACATTTGTAGGACTTT-AATACTTAC-AGTGCGCCTTTTCC-TCCTC  1044

seq1  TTGCCTTATTAGTAGAAGCTGTATTACAT-AACATAAAGTGGCAATATTG  1096
      |||||||||||||||| ||||| |||| | ||||||| ||| ||  ||||
seq2  TTGCCTTATTAGTAGAGGCTGT-TTACCTAAACATAAGGTGCCA--ATTG  1091

seq1  ACTGAAAGGAAACAGAAAATAGAAAGTATTATAA  1130
      |||| || | ||||| |||  |||   |||||||
seq2  ACTGGAAAG-AACAGGAAAATGAA--GATTATAA  1122