BAC Information

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BAC

Clone NameB6Ng01-125N14
Chromosome4 (Build37)
Map Location 125,204,441 - 125,358,594
singlet/doubletdoublet
Overlap geneGrik3
Upstream geneLOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125N14.bB6Ng01-125N14.g
ACCDH928371DH928372
length1,0901,107
definitionDH928371|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N14, 5' end.DH928372|Mus musculus domesticus DNA, BAC clone: B6Ng01-125N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,357,500 - 125,358,594)(125,204,441 - 125,205,559)
sequence
gaattcctccctagagccccaggaggcagcagacattgccacattttaga
tgaaggattggtggctggagcaggcagaaatgcttgttcaagctggtgag
tggccaagtcagttctagtactcaattcactatgaccttaaaatccaaca
cggtgttgtacgagtcaaataccgtggggtgaagtgacagaggcaggcag
tctcaattacattccagttctgttactgtgacctaatttggaataaggtc
ttgtggattatattcttagagaacaaagtcaccaaggtaagatggcatca
tactgaattagggtagccccctcctaacaactggtgcccttataaaagac
atagatatgcagagacgagtgtgtgacaatggagacagaaatgaggaaaa
ggcaggcacaaagccaagaagcaccaagggatgctggccacatcagaacc
tgggaggatggagcccactcaccttcagaacctctgaagggaagcaatgc
cactgacaccctgatttctcatttctgcccaaggagaggacacatttctg
tggtttgaaggcacctggtttgctatcacttggtatagcagcccaagaga
actcatacacctgtcccttagaccctgtgtgggatgcagagagctcttct
accatctactcttgggtcccgttctgagccctgtgctgcattcccataca
catgaatgtcactttggcttctgactacacctgtcaccggggctttgctg
ggatttcttttgtagcatttgatggggtttggagttctacagccatccag
atccctcttctacctctatggtgtccaagaaaacaagctccattcctgac
aaccacaaagcaactcgactcatcctggagttctgcctgctggctccctc
ccatgtctctagtattgggtgttatagcttcggaaataaagtatgcccca
agaagtttcatatgttgagacttgtcccaagttgtgaatctatcattgga
tccctcacgacgatactgatgccttgatcttataatcactgatagatttg
cacttgtataataatactggaaagagagccttcactgtgg
gaattcccatcccctcgttccccatctctgtgatcaaattcctggtagag
acaacttaagggaggagaggggtctatttttttttccagaaggttctgtc
cgtgcttgcaagacttccttcatgtggttggagtgtcactatggagatcg
tgtggcaaaaatgtcattctcacttctcagcgtcccacaggcagagacaa
ggggtgaaggttggtgcttgcttggctcacgttcttcccatgccccctcc
attctctctggatctccagctcacgggatagtgatacctacatccactta
acccttcctggaaatgtcctcttggacatacccagaggtgtgccttccca
tctcccgaggagatgctaaatccagtccagactatagcctgaacctcagc
aagagacactagagatgaaccgcggcctccaccattggatgccccacagt
ctgaaagaggcgacctcttggaagtaggtgcttgcattcctcccgtataa
actgagaaaattctaacaggaaatagaggtccctcagaaccctgaaagaa
ccaggatgggaaagcaggtaggcaaggcaggaggggacacatctccaaca
acaaaccacctgccctacccacggtcttggtcttccttctctcacctctt
cttagcccaggataaacaagagcagagtcccttttccacagcctcctgga
aatcagaaccttctaaactggaagctttctgtcttagggttcccattgct
gtgaagagacaccatgaccaaagcaactctttaaacatttcattggatct
ggcgtacagttttgggaggttcagtcccttatcatcatggtgggaagcct
ggcagcatgcaggctgactcagtgctggaggaactaagagttctgcctct
cgatctggaggcagccaggagctgactggcttctgcatgcagccagggga
tggtcccttccacactgagcatagggactcaagccacccccacactgcct
caaaattgccacttctatagtgccactcccatgggccgagcatcttcaac
acacaccttcaggctggtggcctgacctgggagactgatggtgccattct
caggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125357500_125358594
seq2: B6Ng01-125N14.b_49_1138 (reverse)

seq1  CCACAGTGAAGCTTCTCTTTCCAGTAATACTATTACAGTGCAAATCTATC  50
      |||||||||||  ||||||||||||| || |||   ||||||||||||||
seq2  CCACAGTGAAGGCTCTCTTTCCAGTATTATTATACAAGTGCAAATCTATC  50

seq1  AGTGGATTAATAAGATCAAGGCACTCAGTATCCGGTCGTGAGGGATCCCA  100
      ||| |||| |||||||||||||| ||||||||  |||||||||||| |||
seq2  AGT-GATT-ATAAGATCAAGGCA-TCAGTATC--GTCGTGAGGGAT-CCA  94

seq1  ATGATAGATTCACAACTTGGGACAAGTCTTCAACATATGAACCTTC-TGG  149
      |||||||||||||||||||||||||||| |||||||||||| |||| |||
seq2  ATGATAGATTCACAACTTGGGACAAGTC-TCAACATATGAAACTTCTTGG  143

seq1  GGCATACTTTATATCCG-AGCTATAACACCCAATACTAGAGACATGGGAG  198
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  GGCATACTTTATTTCCGAAGCTATAACACCCAATACTAGAGACATGGGAG  193

seq1  GGAGCCAGCAGGCAGAACTCCAGGATGAGTCGAGTTGCTTTGTGGTTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCAGGCAGAACTCCAGGATGAGTCGAGTTGCTTTGTGGTTGTC  243

seq1  AGGAATGGAGCTTGTTTTCTTGGACACCATAGAGGTAGAAGAGGGATCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGCTTGTTTTCTTGGACACCATAGAGGTAGAAGAGGGATCTG  293

seq1  GATGGCTGTAGAACTCCAAACCCCATCAAATGCTACAAAAGAAATCCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGTAGAACTCCAAACCCCATCAAATGCTACAAAAGAAATCCCAG  343

seq1  CAAAGCCCCGGTGACAGGTGTAGTCAGAAGCCAAAGTGACATTCATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCGGTGACAGGTGTAGTCAGAAGCCAAAGTGACATTCATGTGT  393

seq1  ATGGGAATGCAGCACAGGGCTCAGAACGGGACCCAAGAGTAGATGGTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATGCAGCACAGGGCTCAGAACGGGACCCAAGAGTAGATGGTAGA  443

seq1  AGAGCTCTCTGCATCCCACACAGGGTCTAAGGGACAGGTGTATGAGTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTCTGCATCCCACACAGGGTCTAAGGGACAGGTGTATGAGTTCT  493

seq1  CTTGGGCTGCTATACCAAGTGATAGCAAACCAGGTGCCTTCAAACCACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTGCTATACCAAGTGATAGCAAACCAGGTGCCTTCAAACCACAG  543

seq1  AAATGTGTCCTCTCCTTGGGCAGAAATGAGAAATCAGGGTGTCAGTGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTCCTCTCCTTGGGCAGAAATGAGAAATCAGGGTGTCAGTGGCA  593

seq1  TTGCTTCCCTTCAGAGGTTCTGAAGGTGAGTGGGCTCCATCCTCCCAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCTTCAGAGGTTCTGAAGGTGAGTGGGCTCCATCCTCCCAGGT  643

seq1  TCTGATGTGGCCAGCATCCCTTGGTGCTTCTTGGCTTTGTGCCTGCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGGCCAGCATCCCTTGGTGCTTCTTGGCTTTGTGCCTGCCTTT  693

seq1  TCCTCATTTCTGTCTCCATTGTCACACACTCGTCTCTGCATATCTATGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTTCTGTCTCCATTGTCACACACTCGTCTCTGCATATCTATGTC  743

seq1  TTTTATAAGGGCACCAGTTGTTAGGAGGGGGCTACCCTAATTCAGTATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGGGCACCAGTTGTTAGGAGGGGGCTACCCTAATTCAGTATGA  793

seq1  TGCCATCTTACCTTGGTGACTTTGTTCTCTAAGAATATAATCCACAAGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTTACCTTGGTGACTTTGTTCTCTAAGAATATAATCCACAAGAC  843

seq1  CTTATTCCAAATTAGGTCACAGTAACAGAACTGGAATGTAATTGAGACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCAAATTAGGTCACAGTAACAGAACTGGAATGTAATTGAGACTG  893

seq1  CCTGCCTCTGTCACTTCACCCCACGGTATTTGACTCGTACAACACCGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGTCACTTCACCCCACGGTATTTGACTCGTACAACACCGTGT  943

seq1  TGGATTTTAAGGTCATAGTGAATTGAGTACTAGAACTGACTTGGCCACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTAAGGTCATAGTGAATTGAGTACTAGAACTGACTTGGCCACTC  993

seq1  ACCAGCTTGAACAAGCATTTCTGCCTGCTCCAGCCACCAATCCTTCATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTGAACAAGCATTTCTGCCTGCTCCAGCCACCAATCCTTCATCT  1043

seq1  AAAATGTGGCAATGTCTGCTGCCTCCTGGGGCTCTAGGGAGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGCAATGTCTGCTGCCTCCTGGGGCTCTAGGGAGGAATTC  1090

seq1: chr4_125204441_125205559
seq2: B6Ng01-125N14.g_68_1174

seq1  GAATTCCCATCCCCTCGTTCCCCATCTCTGTGATCAAATTCCTGGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCCCCTCGTTCCCCATCTCTGTGATCAAATTCCTGGTAGAG  50

seq1  ACAACTTAAGGGAGGAGAGGGGTCTATTTTTTTTTCCAGAAGGTTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAAGGGAGGAGAGGGGTCTATTTTTTTTTCCAGAAGGTTCTGTC  100

seq1  CGTGCTTGCAAGACTTCCTTCATGTGGTTGGAGTGTCACTATGGAGATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTGCAAGACTTCCTTCATGTGGTTGGAGTGTCACTATGGAGATCG  150

seq1  TGTGGCAAAAATGTCATTCTCACTTCTCAGCGTCCCACAGGCAGAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAAATGTCATTCTCACTTCTCAGCGTCCCACAGGCAGAGACAA  200

seq1  GGGGTGAAGGTTGGTGCTTGCTTGGCTCACGTTCTTCCCATGCCCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAGGTTGGTGCTTGCTTGGCTCACGTTCTTCCCATGCCCCCTCC  250

seq1  ATTCTCTCTGGATCTCCAGCTCACGGGATAGTGATACCTACATCCACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTGGATCTCCAGCTCACGGGATAGTGATACCTACATCCACTTA  300

seq1  ACCCTTCCTGGAAATGTCCTCTTGGACATACCCAGAGGTGTGCCTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTGGAAATGTCCTCTTGGACATACCCAGAGGTGTGCCTTCCCA  350

seq1  TCTCCCGAGGAGATGCTAAATCCAGTCCAGACTATAGCCTGAACCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGAGGAGATGCTAAATCCAGTCCAGACTATAGCCTGAACCTCAGC  400

seq1  AAGAGACACTAGAGATGAACCGCGGCCTCCACCATTGGATGCCCCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACTAGAGATGAACCGCGGCCTCCACCATTGGATGCCCCACAGT  450

seq1  CTGAAAGAGGCGACCTCTTGGAAGTAGGTGCTTGCATTCCTCCCGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGGCGACCTCTTGGAAGTAGGTGCTTGCATTCCTCCCGTATAA  500

seq1  ACTGAGAAAATTCTAACAGGAAATAGAGGTCCCTCAGAACCCTGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAAATTCTAACAGGAAATAGAGGTCCCTCAGAACCCTGAAAGAA  550

seq1  CCAGGATGGGAAAGCAGGTAGGCAAGGCAGGAGGGGACACATCTCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGGAAAGCAGGTAGGCAAGGCAGGAGGGGACACATCTCCAACA  600

seq1  ACAAACCACCTGCCCTACCCACGGTCTTGGTCTTCCTTCTCTCACCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACCTGCCCTACCCACGGTCTTGGTCTTCCTTCTCTCACCTCTT  650

seq1  CTTAGCCCAGGATAAACAAGAGCAGAGTCCCTTTTCCACAGCCTCCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCAGGATAAACAAGAGCAGAGTCCCTTTTCCACAGCCTCCTGGA  700

seq1  AATCAGAACCTTCTAAACTGGAAGCTTTCTGTCTTAGGGTTCCCATTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACCTTCTAAACTGGAAGCTTTCTGTCTTAGGGTTCCCATTGCT  750

seq1  GTGAAGAGACACCATGACCAAAGCAACTCTTTAAACATTTCATTGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACACCATGACCAAAGCAACTCTTTAAACATTTCATTGGATCT  800

seq1  GGCGTACAGTTTT-GGAGGTTCAGTCCCTTATCATCATGGTGGGAAGCCT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCGTACAGTTTTGGGAGGTTCAGTCCCTTATCATCATGGTGGGAAGCCT  850

seq1  GGCAGCATGCAGGCTGACTCAGTGCTGGAGGAACTAAGAGTTCTGCCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATGCAGGCTGACTCAGTGCTGGAGGAACTAAGAGTTCTGCCTCT  900

seq1  CGATCTGGAGGCAGCCAGGAGCTGACTGGCTTCTGCATGCAGCCAGGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGATCTGGAGGCAGCCAGGAGCTGACTGGCTTCTGCATGCAGCCA-GGGG  949

seq1  ATGGTCCCTTCCACACTGAGCATA-GGACTCCAAAGCCCACCCCCACACT  998
      |||||||||||||||||||||||| ||||||  ||| |||||||||||||
seq2  ATGGTCCCTTCCACACTGAGCATAGGGACTC--AAG-CCACCCCCACACT  996

seq1  GCCTCCAAAAATGCCACACCTTCTAATAGTGCCACTTCCCATGGGCCGAG  1048
      |||| ||||| |||||   ||||| |||||||||| ||||||||||||||
seq2  GCCT-CAAAATTGCCA---CTTCT-ATAGTGCCAC-TCCCATGGGCCGAG  1040

seq1  CATCCTCAAACCACCACACCTTTCAAGCT-GTGG-CTGACCT-GGAGACA  1095
      |||| ||||  || |||||| |||| ||| |||| ||||||| |||||| 
seq2  CATCTTCAA--CA-CACACC-TTCAGGCTGGTGGCCTGACCTGGGAGAC-  1085

seq1  AGGGATGGTGCCAATCTCAGGTCC  1119
         |||||||||| ||||||||||
seq2  --TGATGGTGCCATTCTCAGGTCC  1107