BAC Information

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BAC

Clone NameB6Ng01-126J19
Chromosome4 (Build37)4 (Build37)
Map Location 147,059,940 - 147,060,527146,549,932 - 146,550,766
singlet/doubletsingletsinglet
Overlap geneLOC100043100
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126J19.bB6Ng01-126J19.g
ACCDH928936DH928937
length567832
definitionDH928936|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J19, 5' end.DH928937|Mus musculus domesticus DNA, BAC clone: B6Ng01-126J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,059,940 - 147,060,527)(146,549,932 - 146,550,766)
sequence
acaactaaagacaccccaatggctgaaaaccaacttaaagaaatgttcaa
agtccttagtgataagacaaatgcaaatcacaatgacaccttacagcaaa
cagaatagctaagatcaaaacctcaggtgacaacacatgttggagaggat
gcggagaaagaggaacactcctccattgctggtgggattgcaaacctcta
caaccactctggaaatcaatgtggagtttcctcagaaaattggaaataaa
tagatctgaagtccccgcaataccattcttgggaatatacccaatatctc
caaagacacatacaaataaataagtataaaacaaaacaaaacaaaacaaa
aacaagggtgtttctctaaaaaaaaaggcaatctcttaagaaagacatta
tactataaaatcttcagggatgtaaaactaactaaaccccaggctcatga
aactaaatagatattagtaaactttgatcttacccctctttagcaggctt
ttagcagtttcagtcttcagttctgtaaaactaggacttccctaaatata
tgtgtgtgtgtgtgtgt
gaattcaatctttgttcttcacagagaccctgggagaaggacagcaacaa
gaatgagtgtgtgtctggtaaatacaccacaggtcagtgtcctttccaca
tttctttttttaaaaatctctttttattcaagtcatccaaaagttttaat
ctctatatgtagaatgttatctaaagggcttattttctatgatctacatt
ctttttggtcagtgtaagagcagcaatttgtattttcagacacatctcca
taacacttttagaaaacaattatccttcaacctcatctgcatcaaaaaag
gtatcttaattacttctttttataaagtagaaaagtgctgctgtcctctg
cgcccacggagacaggaacgacatggacacggataccaagttgggttcac
acaacagcttctttacttgttctccttcttgcagcttttcttataaaact
ccccttacaacagcttctcttactacaactagcttctacttagggcaagg
gctaaaaaacaaaactcctatccttgcatctttggatctcatctagctcc
accccacctcatccaatcagaattcacacacgctccagctcaggtcggct
gacaggtccggatcacaaggaatagtccagcctggcaggcagcccacgca
tgcagccacactgtgcatgctcaggcaaggcagtaaacaacttggcccat
gcggccacacccgcttcctgcagaaagctttttttttgggaggggggggt
tcgagagttgtagccctgtctgtcctggacttactttgtaaccagactgt
cctcgaactcagaaatctatcgctctacctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147059940_147060527
seq2: B6Ng01-126J19.b_50_622

seq1  GAATTCACAACTAAAGACACCCCAATGGCTGAAAACCAACTTAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTAAAGACACCCCAATGGCTGAAAACCAACTTAAAGAAAT  50

seq1  GTTCAAAGTCCTTAGTGATAAGACAAATGCAAATCACAATGACACCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTCCTTAGTGATAAGACAAATGCAAATCACAATGACACCTTAC  100

seq1  AGCAAACAGAATAGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAGAATAGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGA  150

seq1  GAGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAA  200

seq1  CCTCTACAACCACTCTGGAAATCAATGTGGAGTTTCCTCAGAAAATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAACCACTCTGGAAATCAATGTGGAGTTTCCTCAGAAAATTGGA  250

seq1  AATAAATAGATCTGAAGTCCCCGCAATACCATTCTTGGGAATATACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGATCTGAAGTCCCCGCAATACCATTCTTGGGAATATACCCAA  300

seq1  TATCTCCAAAGACACATACAAATAAATAAGTATAATAAAAAACAAAACAA  350
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TATCTCCAAAGACACATACAAATAAATAAGTATAAAACAAAACAAAACAA  350

seq1  AACAAAAACAAGGGTGTTTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAG  400
      |||||||||||||||||||||||                 ||||||||||
seq2  AACAAAAACAAGGGTGTTTCTCT-----------------AAAAAAAAAG  383

seq1  GCAATCTCTTAAGAAAGACATTATACTATAAAATCTTCAGGGATGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTTAAGAAAGACATTATACTATAAAATCTTCAGGGATGTAAAA  433

seq1  CTAACTAAACCCCAGGCTCATGAAACTAAATAGATATTAGTAAACTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAACCCCAGGCTCATGAAACTAAATAGATATTAGTAAACTTTGA  483

seq1  TCTTACCCCTCTTTAGCAGGCTTTTAGCAGTTTCAGTCTTCAGTTCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCTCTTTAGCAGGCTTTTAGCAGTTTCAGTCTTCAGTTCTGTA  533

seq1  AAACTAGGACTTCCCTAAATATGTGTGTGTGTGTGTGT--  588
      |||||||||||||||||||||| |||||||||||||||  
seq2  AAACTAGGACTTCCCTAAATATATGTGTGTGTGTGTGTGT  573

seq1: chr4_146549932_146550766
seq2: B6Ng01-126J19.g_69_897

seq1  GAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAGAAGGACAGCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAGAAGGACAGCAACAA  50

seq1  GAATGAGTGTGTGTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTGTGTGTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACA  100

seq1  TTTCTTTTTTTAAAAATCTCTTTTTATTCAAGTCATCCAAAAGTTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTAAAAATCTCTTTTTATTCAAGTCATCCAAAAGTTTTAAT  150

seq1  CTCTATATGTAGAATGTTATCTAAAGGGCTTATTTTCTATGATCTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATGTAGAATGTTATCTAAAGGGCTTATTTTCTATGATCTACATT  200

seq1  CTTTTTGGTCAGTGTAAGAGCAGCAATTTGTATTTTCAGACACATCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGTCAGTGTAAGAGCAGCAATTTGTATTTTCAGACACATCTCCA  250

seq1  TAACACTTTTAGAAAACAATTATCCTTCAACCTCATCTGCATCAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTTAGAAAACAATTATCCTTCAACCTCATCTGCATCAAAAAAG  300

seq1  GTATCTTAATTACTTCTTTTTATAAAGTAGAAAAGTGCTGCTGTCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAATTACTTCTTTTTATAAAGTAGAAAAGTGCTGCTGTCCTCTG  350

seq1  CGCCCACGGAGACAGGAACGACATGGACACGGATACCAAGTTGGGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACGGAGACAGGAACGACATGGACACGGATACCAAGTTGGGTTCAC  400

seq1  ACAACAGCTTCTTTACTTGTTCTCCTTCTTGCAGCTTTTCTTATAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCTTCTTTACTTGTTCTCCTTCTTGCAGCTTTTCTTATAAAACT  450

seq1  CCCCTTACAACAGCTTCTCTTACTACAACTAGCTTCTACTTAGGGCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTACAACAGCTTCTCTTACTACAACTAGCTTCTACTTAGGGCAAGG  500

seq1  GCTAAAAAACAAAACTCCTATCCTTGCATCTTTGGATCTCATCTAGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAACAAAACTCCTATCCTTGCATCTTTGGATCTCATCTAGCTCC  550

seq1  ACCCCACCTCATCCAATCAGAATTCACACACGCTCCAGCTCAGGTCGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCTCATCCAATCAGAATTCACACACGCTCCAGCTCAGGTCGGCT  600

seq1  GACAGGTCCGGATCACAAGGAATAGTCCAGCCTGGCAGGCAGCCCACGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCCGGATCACAAGGAATAGTCCAGCCTGGCAGGCAGCCCACGCA  650

seq1  TGCAGCCACACTGTGCATGCTCAGGCAAGGCAGTAAACAACTTGGCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCACACTGTGCATGCTCAGGCAAGGCAGTAAACAACTTGGCCCAT  700

seq1  GCGGCCACACCCGCTTCCTGCAGAAAAGCTTTTTTTTTGGGGAGGGGGGG  750
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GCGGCCACACCCGCTTCCTGCAG-AAAGCTTTTTTTTT-GGGAGGGGGGG  748

seq1  GTTCGAGAGTTGTAGCCCTGTCTGTCCTGGAACTCACTTTGTAGACCAGA  800
      |||||||||||||||||||||||||||||| ||| |||||||| ||||||
seq2  GTTCGAGAGTTGTAGCCCTGTCTGTCCTGG-ACTTACTTTGTA-ACCAGA  796

seq1  CTGGCCTCGAACTCAGAAATCCACCCGCCTCTACC  835
      ||| ||||||||||||||||| | |   |||||||
seq2  CTGTCCTCGAACTCAGAAATCTATC--GCTCTACC  829