BAC Information

Click to search

BAC

Clone NameB6Ng01-126O13
Chromosome10 (Build37)4 (Build37)
Map Location 28,910,940 - 28,912,06581,055,044 - 81,055,566
singlet/doubletsingletsinglet
Overlap gene6330407J23Rik
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447
Downstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126O13.bB6Ng01-126O13.g
ACCDH929160DH929161
length1,117961
definitionDH929160|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O13, 5' end.DH929161|Mus musculus domesticus DNA, BAC clone: B6Ng01-126O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,910,940 - 28,912,065)(81,055,044 - 81,055,566)
sequence
gaattcccatccaatctcctcgagtaggctttaaaaatgtgatagtacaa
tcacatttaaaaaaaaataaaaaatcgatatgctggaaacgacagcagag
actgcattaccacagcagtacacttacattttcctcaggaagttaatgtc
cagaaatcaaaacttagtgaaccaggaggcatactgatttttgtaaggtg
gttgtcctgagaagggatctaagttatgaagtcattgcaggtggttccca
caggcccctggaggattcagtaataatcaataataataataaatcaggaa
caggggaagggattcctgagctgaatccacttgaaaaaaataagtgtgat
atataaaaaaggaaggtttaaaagataattactggttaaggttggcccat
ggttttaggatgggaagctaatggcatcttctcatcgctgaaaacaggaa
agattcatggggaatgatccacagcagagtacttagagtctgtctctgtc
tctttctctctcttcccacgggttcccagcctagcagatccctctctccc
cctttctgacattttctgtgttcccccttctctgccttcaaagctccgct
ccagtatgtctgcctctatcccatctctccccttctcccaaataaaactc
ctttgtcccaggtctgttgcatagtgtgatttctcaggggcacaacttgg
caagggccctccaggcacccagagcttgcgccattatattttataacact
catctctctagttcttcttctcccctttatgcaaagtttggtttttttct
ctcatgtcacatatttgtgcaattaagttaaatcaatgttccacgtgtgt
gagaattatgcaatactaatagactaggagttagaccccctggtaggcag
acagggagaggaacactgctaagaaataagagtggcaaatttccaaagca
tcctgcttcttccagtccatcccgacttgagactaaagcctgaaagctta
aatatctctggcctttgtttcttctgggagccccatactgatgagtggct
caaaggttcagaccatcttttctcactgagctgattctgtgcttacaggc
tctcctatcaatactgc
gaattccttaatccacttagatttgaccttagtacaaggagataggaatg
gatcaattcgcattcttctacatgataactgccagttgtgccagcaccat
ttgttgaaaatgatgtcttttttccacttgatggtttttgaccatgggtg
tgtgggttgatttctgggtcatcaattctattccactggtctacttgtct
gttgctataccagtaccatgcagtttttagcacaattgctctgtaataca
gctttaggtcaggcatggtgattccaccagagattcttttatccttgaaa
agagtttctgctatcctaggttttttgttattacagatgaattttagatt
accctttcgaattcgttgaagaattgagttggaattttgatggggattgc
attgaatctgtagattgcttctggcactatagccatttttactatattga
tccggccaatccatgagcatgggatatctttccatcttctgagatcccct
ttaatttctttcttcagagacttgaagttcttatcatacagatctttcac
ttccttagttagagttacaccaagttattttatattatttgtgaatattg
agaagggtgttgtttccctaatttctttctcagcctatttattctttgtg
tagagaaaggccattgacttgtttgagttaattttatatccagctacttc
accaaagctgtttatcaggcttaggagttctctggtagaattttagggtc
acttatatatactatcatatcatctgcaaaaagtgatattttgacttctt
cctttccaatttgtatccccttgatctccttttgttgtcaaattgctctg
gctagaacttcagtacatgtgattaggtagggagaagatagacagccttg
tctagtccctgatgttagagggattgcttcagcttcttacatttactttg
atgttgctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28910940_28912065
seq2: B6Ng01-126O13.b_47_1163 (reverse)

seq1  GCAGTATTTGGGTATGGAGAG-CTGT-AGCACAGGATCAGCTCAGGTTGG  48
      ||||||||  | || |||||| |||| ||||||| ||||||||||    |
seq2  GCAGTATT--GATA-GGAGAGCCTGTAAGCACAGAATCAGCTCAG---TG  44

seq1  AGACAGAATGGTTCTGAACCTTTTGAGCCAACTCATCAGTATGGGGCTCC  98
      ||| |  |||| |||||||| |||||||| ||||||||||||||||||||
seq2  AGAAAAGATGG-TCTGAACC-TTTGAGCC-ACTCATCAGTATGGGGCTCC  91

seq1  CAGAAGAGACAAAGGCCAGGAGGATATTTAAGCTTTCAGGCTTTAGTCTC  148
      ||||||| |||||||||||   ||||||||||||||||||||||||||||
seq2  CAGAAGAAACAAAGGCCAG--AGATATTTAAGCTTTCAGGCTTTAGTCTC  139

seq1  AAGTCGGGATGGACTGGAAGAAGCAGGATGCTTTGGAAATTTGCCACTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGGATGGACTGGAAGAAGCAGGATGCTTTGGAAATTTGCCACTCT  189

seq1  TATTTCTTAGCAGTGTTCCTCTCCCTGTCTGCCTACCAGGGGGTCTAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAGCAGTGTTCCTCTCCCTGTCTGCCTACCAGGGGGTCTAACT  239

seq1  CCTAGTCTATTAGTATTGCATAATTCTCACACACGTGGAACATTGATTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTATTAGTATTGCATAATTCTCACACACGTGGAACATTGATTTA  289

seq1  ACTTAATTGCACAAATATGTGACATGAGAGAAAAAAACCAAACTTTGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTGCACAAATATGTGACATGAGAGAAAAAAACCAAACTTTGCAT  339

seq1  AAAGGGGAGAAGAAGAACTAGAGAGATGAGTGTTATAAAATATAATGGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGAAGAAGAACTAGAGAGATGAGTGTTATAAAATATAATGGCG  389

seq1  CAAGCTCTGGGTGCCTGGAGGGCCCTTGCCAAGTTGTGCCCCTGAGAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGGGTGCCTGGAGGGCCCTTGCCAAGTTGTGCCCCTGAGAAAT  439

seq1  CACACTATGCAACAGACCTGGGACAAAGGAGTTTTATTTGGGAGAAGGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATGCAACAGACCTGGGACAAAGGAGTTTTATTTGGGAGAAGGGG  489

seq1  AGAGATGGGATAGAGGCAGACATACTGGAGCGGAGCTTTGAAGGCAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGATAGAGGCAGACATACTGGAGCGGAGCTTTGAAGGCAGAGA  539

seq1  AGGGGGAACACAGAAAATGTCAGAAAGGGGGAGAGAGGGATCTGCTAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAACACAGAAAATGTCAGAAAGGGGGAGAGAGGGATCTGCTAGGC  589

seq1  TGGGAACCCGTGGGAAGAGAGAGAAAGAGACAGAGACAGACTCTAAGTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCCGTGGGAAGAGAGAGAAAGAGACAGAGACAGACTCTAAGTAC  639

seq1  TCTGCTGTGGATCATTCCCCATGAATCTTTCCTGTTTTCAGCGATGAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTGGATCATTCCCCATGAATCTTTCCTGTTTTCAGCGATGAGAA  689

seq1  GATGCCATTAGCTTCCCATCCTAAAACCATGGGCCAACCTTAACCAGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTAGCTTCCCATCCTAAAACCATGGGCCAACCTTAACCAGTAA  739

seq1  TTATCTTTTAAACCTTCCTTTTTTATATATCACACTTATTTTTTTCAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTAAACCTTCCTTTTTTATATATCACACTTATTTTTTTCAAGT  789

seq1  GGATTCAGCTCAGGAATCCCTTCCCCTGTTCCTGATTTATTATTATTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGCTCAGGAATCCCTTCCCCTGTTCCTGATTTATTATTATTATT  839

seq1  GATTATTACTGAATCCTCCAGGGGCCTGTGGGAACCACCTGCAATGACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTACTGAATCCTCCAGGGGCCTGTGGGAACCACCTGCAATGACTT  889

seq1  CATAACTTAGATCCCTTCTCAGGACAACCACCTTACAAAAATCAGTATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTAGATCCCTTCTCAGGACAACCACCTTACAAAAATCAGTATGC  939

seq1  CTCCTGGTTCACTAAGTTTTGATTTCTGGACATTAACTTCCTGAGGAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTTCACTAAGTTTTGATTTCTGGACATTAACTTCCTGAGGAAAA  989

seq1  TGTAAGTGTACTGCTGTGGTAATGCAGTCTCTGCTGTCGTTTCCAGCATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTGTACTGCTGTGGTAATGCAGTCTCTGCTGTCGTTTCCAGCATA  1039

seq1  TCGATTTTTTATTTTTTTTTAAATGTGATTGTACTATCACATTTTTAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTTTTTATTTTTTTTTAAATGTGATTGTACTATCACATTTTTAAAG  1089

seq1  CCTACTCGAGGAGATTGGATGGGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  CCTACTCGAGGAGATTGGATGGGAATTC  1117

seq1: chr4_81055044_81055566
seq2: B6Ng01-126O13.g_514_1029 (reverse)

seq1  AGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA  50
      ||||| ||||||||||||||||| | ||||||| ||||||||||| ||||
seq2  AGTAG-CAACATCAAAGTAAATGTA-AGAAGCT-GAAGCAATCCCTCTAA  47

seq1  AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATA  100
       ||||||||||||||||||||| | |  ||||||||||||  || |||| 
seq2  CATCAGGGACTAGACAAGGCTGTCTATCTTCTCCCTACCTAATC-ACAT-  95

seq1  GTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGG  150
      |||| ||||||  |||||||||||||| ||||||||||||||||||||||
seq2  GTAC-TGAAGTTCTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGG  144

seq1  GATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATA  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATA  194

seq1  TGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAAC  250
      ||||||||||||||||||||||| ||||||| |||||||||||||||| |
seq2  TGATAGTATATATAAGTGACCCT-AAAATTCTACCAGAGAACTCCTAAGC  243

seq1  CTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAA  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAA  293

seq1  GTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTA  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTCAATGGCCTTTCTCTACACAAAGAATAAATAGGCTGAGAAAGAAATTA  343

seq1  GGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGC  400
      ||||||||||||||||||||||| ||||||||||||||||||| || || 
seq2  GGGAAACAACACCCTTCTCAATATTCACAAATAATATAAAATAACTTGGT  393

seq1  GTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTC  450
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTC  443

seq1  TCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAT  500
      ||||||||||||||||||||  ||||||||||||||||||||| ||||||
seq2  TCTGAAGAAAGAAATTAAAGGGGATCTCAGAAGATGGAAAGATATCCCAT  493

seq1  GCTCATGGATTGGCAGGATCAAT  523
      |||||||||||||| ||||||||
seq2  GCTCATGGATTGGCCGGATCAAT  516