BAC Information

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BAC

Clone NameB6Ng01-127F08
Chromosome4 (Build37)
Map Location 120,411,501 - 120,606,004
singlet/doubletdoublet
Overlap geneKcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69
Upstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4
Downstream geneSmap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F08.bB6Ng01-127F08.g
ACCDH929477DH929478
length947525
definitionDH929477|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F08, 5' end.DH929478|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,605,056 - 120,606,004)(120,411,501 - 120,412,030)
sequence
gaattcagggccagcctgacttaactgatagtgtgcctcatataaaaaaa
ggatcaggattttctccataaaggtcttacacacattacatatcctgtgt
tagatttattctgagatcttgcacttgatagtataggtgatatattttta
gagttatattttgtatattactgctaaatagtaatacctaactttgaatg
tttctattttgacattttaaacttttattcattgttttgggcattttgaa
acaagggattattattctgtaacccatgatggtctcaaactcaagatgat
cctcctgcctcagttttcagaatatcagaccagaatctgcactctctgct
tgtttttttcagaattactattcatagtgctcttaggttaccctgttata
aacagtactcacctgtacgtcctcctgggttttattgtgcgcaactgata
tttttgagagcgatacaggctgagggtacagttctcgggcagaaaactgc
ctgcttatgccgggatcacaaagcaggcaacaacgagaaaccatggaagc
tgctgtgggtgctgttgtctcttgatggaatcttaaaagtaaccttgtag
agggtttttaaaaagaagtcttagccagcaactgtggtttatgactgtag
tcgtagagtgaggggcaggagatgaggacttcaaggtcatactcaccttt
atcggaggatggaggccagactgggctacttgagaccctgtctttgcggg
gggcggggggggagaccttaaataataacaagtatttatttaattccgtg
aaatagaaaaattgcagtttcaaagttcaatcttgctttatcatctcttg
agctctagattgagacatgcaggtgggcccttcccaccatccccttctcc
tctccaagccagaggcaaagcctgaataaacctagatttattactgt
aaggacaggaagaagaggcacagagaaaggcaggaggcttgagcctcccc
tcatccccccaacccaagaagggggctagcagtagagtgcttgcgtagct
gcacaaggtcctgacttcaatctcctgcatcctgggtgacaggaagtggg
taggagggccctgtaaactcaaacccctgctaaggcagagagcagcagac
agcttagcacacggttccaggagtcttgttccgggttcaaatgctgcttc
tacaatgcttcttccaatgttagctgtgttgatgttagacaagtcgttta
acttctttttgtgggtttgtggattcatttatctgtttgtttttagacag
ggtctcactgcatcgctgccctagaacccacaaatgtagaccaggctggc
cttgaactcacaaagatctgcctgcttattcttcctgggtgctggaatca
aaggtgtgagccaccatgcccagcagtcattttaacttctctctctctct
ctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_120605056_120606004
seq2: B6Ng01-127F08.b_48_994 (reverse)

seq1  ACAGTAATAAAGTCTAGGTTTA-TCAGGCCTTGGCTCTGGGCTTGGAGAG  49
      ||||||||||| |||||||||| |||||| ||| |||| |||||||||||
seq2  ACAGTAATAAA-TCTAGGTTTATTCAGGCTTTGCCTCT-GGCTTGGAGAG  48

seq1  GAGAAGGGGATGATGGGAAGAGACCACCTGCATGTCTCAATCTAGAGCTC  99
      |||||||||||| ||||||| | |||||||||||||||||||||||||||
seq2  GAGAAGGGGATGGTGGGAAGGGCCCACCTGCATGTCTCAATCTAGAGCTC  98

seq1  AGGAGATGATAAAGCAAGATTGAACTTTGAAACTGCAATTTTTCTATTTC  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGATAAAGCAAGATTGAACTTTGAAACTGCAATTTTTCTATTTC  148

seq1  ACGGAATTAAATAAATACTTGTTATTTATTTAAGGTCTCCCCCCCCGCCC  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGGAATTAAATAAATACTTGTTA-TTATTTAAGGTCTCCCCCCCCGCCC  197

seq1  CCCGCAAAGACAGGGTCTCAAGTAGCCCAGTCTGGCCTCCATCCTCCGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAAGACAGGGTCTCAAGTAGCCCAGTCTGGCCTCCATCCTCCGAT  247

seq1  AAAGGTGAGTATGACCTTGAAGTCCTCATCTCCTGCCCCTCACTCTACGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAGTATGACCTTGAAGTCCTCATCTCCTGCCCCTCACTCTACGA  297

seq1  CTACAGTCATAAACCACAGTTGCTGGCTAAGACTTCTTTTTAAAAACCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCATAAACCACAGTTGCTGGCTAAGACTTCTTTTTAAAAACCCT  347

seq1  CTACAAGGTTACTTTTAAGATTCCATCAAGAGACAACAGCACCCACAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGTTACTTTTAAGATTCCATCAAGAGACAACAGCACCCACAGCA  397

seq1  GCTTCCATGGTTTCTCGTTGTTGCCTGCTTTGTGATCCCGGCATAAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATGGTTTCTCGTTGTTGCCTGCTTTGTGATCCCGGCATAAGCAG  447

seq1  GCAGTTTTCTGCCCGAGAACTGTACCCTCAGCCTGTATCGCTCTCAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTCTGCCCGAGAACTGTACCCTCAGCCTGTATCGCTCTCAAAAA  497

seq1  TATCAGTTGCGCACAATAAAACCCAGGAGGACGTACAGGTGAGTACTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTGCGCACAATAAAACCCAGGAGGACGTACAGGTGAGTACTGTT  547

seq1  TATAACAGGGTAACCTAAGAGCACTATGAATAGTAATTCTGAAAAAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGGGTAACCTAAGAGCACTATGAATAGTAATTCTGAAAAAAACA  597

seq1  AGCAGAGAGTGCAGATTCTGGTCTGATATTCTGAAAACTGAGGCAGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGTGCAGATTCTGGTCTGATATTCTGAAAACTGAGGCAGGAGG  647

seq1  ATCATCTTGAGTTTGAGACCATCATGGGTTACAGAATAATAATCCCTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTGAGTTTGAGACCATCATGGGTTACAGAATAATAATCCCTTGT  697

seq1  TTCAAAATGCCCAAAACAATGAATAAAAGTTTAAAATGTCAAAATAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGCCCAAAACAATGAATAAAAGTTTAAAATGTCAAAATAGAAA  747

seq1  CATTCAAAGTTAGGTATTACTATTTAGCAGTAATATACAAAATATAACTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAAGTTAGGTATTACTATTTAGCAGTAATATACAAAATATAACTC  797

seq1  TAAAAATATATCACCTATACTATCAAGTGCAAGATCTCAGAATAAATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATATCACCTATACTATCAAGTGCAAGATCTCAGAATAAATCTA  847

seq1  ACACAGGATATGTAATGTGTGTAAGACCTTTATGGAGAAAATCCTGATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATATGTAATGTGTGTAAGACCTTTATGGAGAAAATCCTGATCC  897

seq1  TTTTTTTATATGAGGCACACTATCAGTTAAGTCAGGCTGGCCCTGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATATGAGGCACACTATCAGTTAAGTCAGGCTGGCCCTGAATTC  947

seq1: chr4_120411501_120412030
seq2: B6Ng01-127F08.g_72_602

seq1  GAATTCAAGGACAGGAAGAAGAGGCACAGAGAAAGGCAGGAGGCTTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGGAAGAAGAGGCACAGAGAAAGGCAGGAGGCTTGAGC  50

seq1  CTCCCCTCATCCCCCCAACCCAAGAAGGGGGCTAGCAGTAGAGTGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCATCCCCCCAACCCAAGAAGGGGGCTAGCAGTAGAGTGCTTGC  100

seq1  GTAGCTGCACAAGGTCCTGACTTCAATCTCCTGCATCCTGGGTGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCACAAGGTCCTGACTTCAATCTCCTGCATCCTGGGTGACAGGA  150

seq1  AGTGGGTAGGAGGGCCCTGTAAACTCAAACCCCTGCTAAGGCAGAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAGGAGGGCCCTGTAAACTCAAACCCCTGCTAAGGCAGAGAGCA  200

seq1  GCAGACAGCTTAGCACACGGTTCCAGGAGTCTTGTTCCGGGTTCAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCTTAGCACACGGTTCCAGGAGTCTTGTTCCGGGTTCAAATGC  250

seq1  TGCTTCTACAATGCTTCTTCCAATGTTAGCTGTGTTGATGTTAGACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTACAATGCTTCTTCCAATGTTAGCTGTGTTGATGTTAGACAAGT  300

seq1  CGTTTAACTTCTTTTTGTGGGTTTGTGGATTCATTTATCTGTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAACTTCTTTTTGTGGGTTTGTGGATTCATTTATCTGTTTGTTTTT  350

seq1  AGACAGGGTCTCACTGCATCGCTGCCCTAGAACCCACAAATGTAGACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTCTCACTGCATCGCTGCCCTAGAACCCACAAATGTAGACCAG  400

seq1  GCTGGCCTTGAACTCACAAAGATCTGCCTGCTTATTCTTCCTGGGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGAACTCACAAAGATCTGCCTGCTTATTCTTCCTGGGTGCTG  450

seq1  GAATCAAAGGTGTGAGCCACCATGCCCAGCAGTCA-TTTAACTTCTCTCT  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATCAAAGGTGTGAGCCACCATGCCCAGCAGTCATTTTAACTTCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  530
      |||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  531