BAC Information

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BAC

Clone NameB6Ng01-127F10
Chromosome4 (Build37)
Map Location 97,060,276 - 97,171,662
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F10.bB6Ng01-127F10.g
ACCDH929481DH929482
length1,133967
definitionDH929481|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F10, 5' end.DH929482|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,170,507 - 97,171,662)(97,060,276 - 97,060,876)
sequence
gaattccagaaacgggtgatacctccattaggtctccctttaacctctgt
ttctcctctgcatctttccttctccagttgacttgtaagtaacatcgaac
ctctggaggttgctctactcacttaacaattagctaaatttgtccatttt
ttccttttattcaaagaagaaagtgtatggattctggagagactccattt
tatttaattgaaactaatttgttcaacaagaacaagaacaacaagaacaa
gaacaacaagaacaagaacaacaacaacaataaaacaacaacaacaataa
caataatctagtggaaatggtgcagagtgttgggccctatttgttttctg
agtacgggtaaagtttagaaaaaacactggatggatttcaaactcttgat
taaactttattcatcctttattccctttcagatacttccattgatctagt
ttattttcctcaaagactttggtgctacattgtcataatgaagctagaag
tgttcaagatatgtccaaacctttttcatcccaaactggtaatgtttgtc
cctggagaggtgacataaggtctaggcctgggatgtttggatcagttgcc
tatagatgccagtgtgggtaagcagagcaattgtgaggcttagcacaacc
aatgttctgtattacaaagggacacctgtggatcaggaagggacacatga
atcccaggatggttctgattgtgcacagcaaaaaactgtaaatgtactta
aagtatcatgattttttaaaaagttttttggttttagttcataactaaat
tgtatttatgtgaactttctggatgatggtcatacctcaataccaaaaca
ttggatggattgagaaggaaaattgggagtgaagatttagctactaaaaa
atgaaatttaagccacaatatagatgaattagatcacaagacagggctat
gtgagctgcagaaagtagttaaaggatgcagtcatcagtgagagtatccc
tgtgctagctcttactgatgttgtttatatgtaaacgcagtgcactgttt
cagagtccagagtctagactggagagtcagacaaaagtctgttaatgctt
ggcagtcatctataactctgtccgccccaggga
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttactcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgcttgcaaggatgtggagaaagagatacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatattcagaagatgttccaactgataagaaggacacatgctccactat
gttcatagcagcctcatttataatagcctgaagctggaaagaacccagat
acccctcaacagagcaatggatacagaaaaatgtggtacatttacataat
ggagtactactaagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aggaactcacacaatatatactcactgataagtgggtattagcccagaaa
cttaggatacccaagatataagatacaatttgctaaatgcatgaaactca
agaagaaaggaagaccaaagtgtggacactttgccccttcttagaattgg
gaacaaaacacccatggaaggagttacagatacaaagtttggagctgtga
ccaaaggattgaccatctggagactgtcatatccgggatccatcccataa
tcagctttcaaatgctgacaccattgctttggaagccctgagttagcttt
ctagcaaaatagcattgttgttgaggagtttacatatgctgtgaagctca
ggcagtactgagcagatactaatttatattatgaaactaatcactacatc
agtatcatgtgatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_97170507_97171662
seq2: B6Ng01-127F10.b_47_1179 (reverse)

seq1  TCCCTGGGGCTGAACAGTGTTATAGAGTGACTGCCAAGGCCTATTAACAG  50
      |||||||||| | |||| |||||||| |||||||||||    ||||||| 
seq2  TCCCTGGGGC-GGACAGAGTTATAGA-TGACTGCCAAG---CATTAACA-  44

seq1  GGCCTTTTGTCTGACTCTCCAGTCTAGACTACTGGGGACTCTTGAAAACA  100
       | ||||||||||||||||||||||||||| ||  |||||||   |||||
seq2  -GACTTTTGTCTGACTCTCCAGTCTAGACT-CT--GGACTCT--GAAACA  88

seq1  GTGCACCTGCGTTTACATTATAAACCAACATCAGTTAAAGAGCTAGCACA  150
      ||||| ||||||||||| |||||| ||||||||||  |||||||||||||
seq2  GTGCA-CTGCGTTTACA-TATAAA-CAACATCAGT--AAGAGCTAGCACA  133

seq1  GGGGATTAACTCCTCCACTGATGACTGCATCCTTTAACTACTTTCTGCAG  200
       |||||  ||||   |||||||||||||||||||||||||||||||||||
seq2  -GGGAT--ACTC--TCACTGATGACTGCATCCTTTAACTACTTTCTGCAG  178

seq1  CTCACATAGCCCTGTCTTGTGATCTAATTCATTCTATATTGTGGCTTAAA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCACATAGCCCTGTCTTGTGATCTAATTCA-TCTATATTGTGGCTTAAA  227

seq1  TTTCATTTTTTAGTAGCTAAATCTTCACTCCCAATTTTCCTTCTCAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTAGTAGCTAAATCTTCACTCCCAATTTTCCTTCTCAATCC  277

seq1  ATCCAATGTTTTGGTATTGAGGTATGACCATCATCCAGAAAGTTCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTTTTGGTATTGAGGTATGACCATCATCCAGAAAGTTCACATA  327

seq1  AATACAATTTAGTTATGAACTAAAACCAAAAAACTTTTTAAAAAATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTTAGTTATGAACTAAAACCAAAAAACTTTTTAAAAAATCATG  377

seq1  ATACTTTAAGTACATTTACAGTTTTTTGCTGTGCACAATCAGAACCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAAGTACATTTACAGTTTTTTGCTGTGCACAATCAGAACCATCC  427

seq1  TGGGATTCATGTGTCCCTTCCTGATCCACAGGTGTCCCTTTGTAATACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCATGTGTCCCTTCCTGATCCACAGGTGTCCCTTTGTAATACAG  477

seq1  AACATTGGTTGTGCTAAGCCTCACAATTGCTCTGCTTACCCACACTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGTTGTGCTAAGCCTCACAATTGCTCTGCTTACCCACACTGGCA  527

seq1  TCTATAGGCAACTGATCCAAACATCCCAGGCCTAGACCTTATGTCACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGCAACTGATCCAAACATCCCAGGCCTAGACCTTATGTCACCTC  577

seq1  TCCAGGGACAAACATTACCAGTTTGGGATGAAAAAGGTTTGGACATATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGACAAACATTACCAGTTTGGGATGAAAAAGGTTTGGACATATCT  627

seq1  TGAACACTTCTAGCTTCATTATGACAATGTAGCACCAAAGTCTTTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTTCTAGCTTCATTATGACAATGTAGCACCAAAGTCTTTGAGGA  677

seq1  AAATAAACTAGATCAATGGAAGTATCTGAAAGGGAATAAAGGATGAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTAGATCAATGGAAGTATCTGAAAGGGAATAAAGGATGAATAA  727

seq1  AGTTTAATCAAGAGTTTGAAATCCATCCAGTGTTTTTTCTAAACTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATCAAGAGTTTGAAATCCATCCAGTGTTTTTTCTAAACTTTACC  777

seq1  CGTACTCAGAAAACAAATAGGGCCCAACACTCTGCACCATTTCCACTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCAGAAAACAAATAGGGCCCAACACTCTGCACCATTTCCACTAGA  827

seq1  TTATTGTTATTGTTGTTGTTGTTTTATTGTTGTTGTTGTTCTTGTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTATTGTTGTTGTTGTTTTATTGTTGTTGTTGTTCTTGTTCTTG  877

seq1  TTGTTCTTGTTCTTGTTGTTCTTGTTCTTGTTGAACAAATTAGTTTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGTTCTTGTTGTTCTTGTTCTTGTTGAACAAATTAGTTTCAAT  927

seq1  TAAATAAAATGGAGTCTCTCCAGAATCCATACACTTTCTTCTTTGAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATGGAGTCTCTCCAGAATCCATACACTTTCTTCTTTGAATAA  977

seq1  AAGGAAAAAATGGACAAATTTAGCTAATTGTTAAGTGAGTAGAGCAACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAATGGACAAATTTAGCTAATTGTTAAGTGAGTAGAGCAACCT  1027

seq1  CCAGAGGTTCGATGTTACTTACAAGTCAACTGGAGAAGGAAAGATGCAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTCGATGTTACTTACAAGTCAACTGGAGAAGGAAAGATGCAGA  1077

seq1  GGAGAAACAGAGGTTAAAGGGAGACCTAATGGAGGTATCACCCGTTTCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAGAGGTTAAAGGGAGACCTAATGGAGGTATCACCCGTTTCTG  1127

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1133

seq1: chr4_97060276_97060876
seq2: B6Ng01-127F10.g_454_1034

seq1  GAAAGAACCCAGATACCCCTCAACAGAGCAATGGATACAGAAAAATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACCCAGATACCCCTCAACAGAGCAATGGATACAGAAAAATGTGG  50

seq1  TACATTTACATAATGGAGTACTACTAAGCTATTAAAAAGAATGAATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACATAATGGAGTACTACTAAGCTATTAAAAAGAATGAATTTAT  100

seq1  GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG  150

seq1  TAACCCAATCACAAAGGAACTCACACAATATATACTCACTGATAAGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAATCACAAAGGAACTCACACAATATATACTCACTGATAAGTGGG  200

seq1  TATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAA  250

seq1  ATGCATGAAACTCAAGAAG-AAGGAAGACCAAAGTGTGGACACTTTGCCC  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCATGAAACTCAAGAAGAAAGGAAGACCAAAGTGTGGACACTTTGCCC  300

seq1  CTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGATACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGATACAAA  350

seq1  GTTTGGAGCTGTGACCAAAGGATTGACCATCTGGAGACTGTCATATCCGG  399
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTGGAGCTGTGACCAAAGGATTGACCATCTGGAGACTGTCATATCC-G  399

seq1  GGATCCATCCCATAATCAGCTTTCAAATGCTGACACCATTGCTTTGGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGATCCATCCCATAATCAGCTTTCAAATGCTGACACCATTGCTTT-GGAA  448

seq1  GCCCCTGAGTTAAGCTTTCTTAGCAAAATTAGCATTGTTGTTGAGGGAAG  499
      | ||||||||| ||||||| |||||||| |||||||||||||||||  ||
seq2  G-CCCTGAGTT-AGCTTTC-TAGCAAAA-TAGCATTGTTGTTGAGG--AG  492

seq1  TTTTACATATGCTGTGAAAGCTCAGGGCAGTACTGAGCAAGATACTAATT  549
       ||||||||||||||| ||||||| ||||||||||||| ||||||||| |
seq2  -TTTACATATGCTGTG-AAGCTCA-GGCAGTACTGAGC-AGATACTAA-T  537

seq1  TTATATTATGGAAACTTAAATCCACTAACATCAGTTATCCATGTGGATGT  599
      ||||||||| ||||||  ||| |||| ||||||| ||| ||||| |||||
seq2  TTATATTAT-GAAACT--AAT-CACT-ACATCAG-TAT-CATGT-GATGT  579

seq1  AA  601
      ||
seq2  AA  581