BAC Information

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BAC

Clone NameB6Ng01-127M20
Chromosome4 (Build37)
Map Location 138,112,640 - 138,260,062
singlet/doubletdoublet
Overlap gene4931403E03Rik
Upstream geneHspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618
Downstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M20.bB6Ng01-127M20.g
ACCDH929823DH929824
length1,066838
definitionDH929823|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M20, 5' end.DH929824|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,258,985 - 138,260,062)(138,112,640 - 138,113,478)
sequence
gaattcagtcccaacccctgaagcaggaaccggccttttctcctctccat
caatcagaaagtcatagttacaagggcctctggctattttcttctgggac
aacagaggaaacgagaccagttgcctcagaaaacaagggctgaggtgcag
agtgacctggtggtggtcaagagcccaaatatagaaagaaaacctttccc
cagattttgcttccagaagggagtcacattctgcacttgtaaaactattt
cctggctgagagctgacctatatcgccgtccctgcccacactggtaattg
tctaccacagggcgcctgctcccgggccagcatcctttctctggtttttc
tgcctgctaattggtttccagtggttctgttgaaccaactgtgctgaaac
cctccctgtgagccgccgctgctcccttgagcatgctcaagggagcagat
gaccctcaagggcctcacgaagaccccaaggaggtactcccttcacaaaa
aaaaaaacaaaaaaaaaaacaaccattctgaagaaagagtcatttggctg
ttttgaaagaatggttgcaaacacggaaaaactgagacgagttggtgata
acaaagggaattagagaggagggtagactcggcagcctggatgaacgtct
cctcctttttcctcaagaccctgcaatcaaggcaggggagaatgtgaggg
cagagaaggaagctggctggaagttttcactggagagcaaggctctctgc
tgtgacccaagaagccagagtctggagtgtaagtgattggcagctgagag
tccttccctgtgatcaagcccgattttttttttttcattctccagatggt
caggctagatcagaatgggaacagtgattggatgatcaatgggaagaagt
gtctaacaggttccactcctgcaatggcgctctactctttcgcagggccc
tgatggtccctcagacttcctcagagtgggcaagaatctcataaatacac
atgaagatgaaaccctgtctcagctccctgttctgagtggaggttgggta
tagtgggatggtttca
gaattccattcagcttcttgcctaaggtgaggatgccaagaacccagcac
ctagctgcactccaagctttctggaatgaaagctgcttggttagcagttg
ccagaacacatgaacgccatttgctttccacgacctggttcctcggagca
cagttcttcatccctagcccagatgcattcaggttggactccggatcctt
aaagctggggactatggtccaaggagggaaggcctgtcctcaggagagat
gacacaaccttgggaagggtgaggtgaggttgggaaagtattcattaccc
gctcaatgagagctcaagggtctgggatcaggatgttgaactcaagtcag
agggcaggcttgagtccgtcgtcttcttttaaaacatggggaaactgagg
ctcagagagaggaagggacctgacttggggcatgaagtctgtgtccctga
aatgcttcatacaatgaccccaatgacctttgacaggtaagaactgcacc
tcatatcttactgtggcattgtaaggatttcagggtcaaattcctggttc
cagcagttccaacagacagggctcagccacgatacaccagccaacaaagg
agaggtgagaaacagagagatttagtcacgcatattgagaaagaggggcc
ggtaaaggaagagataaaaggaatccagggatcccaagttcactgtaaag
gtaccgatgagaactctggggttcaaatagaggaagacttgggcaaggtt
aagatgtatgcataatttaaccacaattaaatgatcatggtcaagggttg
gtcttacccataattcttgagtcctgtaaggagtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138258985_138260062
seq2: B6Ng01-127M20.b_52_1117 (reverse)

seq1  TGAAACCATCCAACTATACCCAACCTCCACTCAAGGGGACAGGGGAGCTG  50
      ||||||||||| |||||||||||||||||||||   | ||| ||||||||
seq2  TGAAACCATCCCACTATACCCAACCTCCACTCA---GAACA-GGGAGCTG  46

seq1  AGACAGGGTTTCATCTTCATGTGTTATTTATGGAGA-TCTTGCCCACTCT  99
      ||||||||||||||||||||||| ||||||| |||| |||||||||||||
seq2  AGACAGGGTTTCATCTTCATGTG-TATTTAT-GAGATTCTTGCCCACTCT  94

seq1  GGAGGAAGTCTGGAGGGAACCATCAGGGGCCCCTGCGAAAGGAGTAGAGC  149
       |||||||||| ||||| ||||||||||  |||||||||| |||||||| 
seq2  -GAGGAAGTCT-GAGGG-ACCATCAGGG--CCCTGCGAAA-GAGTAGAG-  137

seq1  CGCCATTGCAGGGAGTGGAACCTGTTAGACACTTCTT-CCATTGATCATC  198
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CGCCATTGCA-GGAGTGGAACCTGTTAGACACTTCTTCCCATTGATCATC  186

seq1  CAATCACTGTTCCCATTCTGATCTAGCCTGACCATCTGGAGAATGAAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTGTTCCCATTCTGATCTAGCCTGACCATCTGGAGAATGAAAAA  236

seq1  AAAAAAATCGGGCTTGATCACAGGGAAGGACTCTCAGCTGCCAATCACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCGGGCTTGATCACAGGGAAGGACTCTCAGCTGCCAATCACTT  286

seq1  ACACTCCAGACTCTGGCTTCTTGGGTCACAGCAGAGAGCCTTGCTCTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCAGACTCTGGCTTCTTGGGTCACAGCAGAGAGCCTTGCTCTCCA  336

seq1  GTGAAAACTTCCAGCCAGCTTCCTTCTCTGCCCTCACATTCTCCCCTGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACTTCCAGCCAGCTTCCTTCTCTGCCCTCACATTCTCCCCTGCC  386

seq1  TTGATTGCAGGGTCTTGAGGAAAAAGGAGGAGACGTTCATCCAGGCTGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCAGGGTCTTGAGGAAAAAGGAGGAGACGTTCATCCAGGCTGCC  436

seq1  GAGTCTACCCTCCTCTCTAATTCCCTTTGTTATCACCAACTCGTCTCAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACCCTCCTCTCTAATTCCCTTTGTTATCACCAACTCGTCTCAGT  486

seq1  TTTTCCGTGTTTGCAACCATTCTTTCAAAACAGCCAAATGACTCTTTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGTGTTTGCAACCATTCTTTCAAAACAGCCAAATGACTCTTTCTT  536

seq1  CAGAATGGTTGTTTTTTTTTTTGTTTTTTTTTTTGTGAAGGGAGTACCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGTTGTTTTTTTTTTTGTTTTTTTTTTTGTGAAGGGAGTACCTC  586

seq1  CTTGGGGTCTTCGTGAGGCCCTTGAGGGTCATCTGCTCCCTTGAGCATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTCTTCGTGAGGCCCTTGAGGGTCATCTGCTCCCTTGAGCATGC  636

seq1  TCAAGGGAGCAGCGGCGGCTCACAGGGAGGGTTTCAGCACAGTTGGTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGCAGCGGCGGCTCACAGGGAGGGTTTCAGCACAGTTGGTTCA  686

seq1  ACAGAACCACTGGAAACCAATTAGCAGGCAGAAAAACCAGAGAAAGGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCACTGGAAACCAATTAGCAGGCAGAAAAACCAGAGAAAGGATG  736

seq1  CTGGCCCGGGAGCAGGCGCCCTGTGGTAGACAATTACCAGTGTGGGCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCGGGAGCAGGCGCCCTGTGGTAGACAATTACCAGTGTGGGCAGG  786

seq1  GACGGCGATATAGGTCAGCTCTCAGCCAGGAAATAGTTTTACAAGTGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCGATATAGGTCAGCTCTCAGCCAGGAAATAGTTTTACAAGTGCAG  836

seq1  AATGTGACTCCCTTCTGGAAGCAAAATCTGGGGAAAGGTTTTCTTTCTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTCCCTTCTGGAAGCAAAATCTGGGGAAAGGTTTTCTTTCTAT  886

seq1  ATTTGGGCTCTTGACCACCACCAGGTCACTCTGCACCTCAGCCCTTGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCTCTTGACCACCACCAGGTCACTCTGCACCTCAGCCCTTGTTT  936

seq1  TCTGAGGCAACTGGTCTCGTTTCCTCTGTTGTCCCAGAAGAAAATAGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCAACTGGTCTCGTTTCCTCTGTTGTCCCAGAAGAAAATAGCCA  986

seq1  GAGGCCCTTGTAACTATGACTTTCTGATTGATGGAGAGGAGAAAAGGCCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTTGTAACTATGACTTTCTGATTGATGGAGAGGAGAAAAGGCCG  1036

seq1  GTTCCTGCTTCAGGGGTTGGGACTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  GTTCCTGCTTCAGGGGTTGGGACTGAATTC  1066

seq1: chr4_138112640_138113478
seq2: B6Ng01-127M20.g_70_907

seq1  GAATTCCATTCAGCTTCTTGCCTAAGGTGAGGATGCCAAGAACCCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAGCTTCTTGCCTAAGGTGAGGATGCCAAGAACCCAGCAC  50

seq1  CTAGCTGCACTCCAAGCTTTCTGGAATGAAAGCTGCTTGGTTAGCAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCACTCCAAGCTTTCTGGAATGAAAGCTGCTTGGTTAGCAGTTG  100

seq1  CCAGAACACATGAACGCCATTTGCTTTCCACGACCTGGTTCCTCGGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACACATGAACGCCATTTGCTTTCCACGACCTGGTTCCTCGGAGCA  150

seq1  CAGTTCTTCATCCCTAGCCCAGATGCATTCAGGTTGGACTCCGGATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCATCCCTAGCCCAGATGCATTCAGGTTGGACTCCGGATCCTT  200

seq1  AAAGCTGGGGACTATGGTCCAAGGAGGGAAGGCCTGTCCTCAGGAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGGACTATGGTCCAAGGAGGGAAGGCCTGTCCTCAGGAGAGAT  250

seq1  GACACAACCTTGGGAAGGGTGAGGTGAGGTTGGGAAAGTATTCATTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACCTTGGGAAGGGTGAGGTGAGGTTGGGAAAGTATTCATTACCC  300

seq1  GCTCAATGAGAGCTCAAGGGTCTGGGATCAGGATGTTGAACTCAAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATGAGAGCTCAAGGGTCTGGGATCAGGATGTTGAACTCAAGTCAG  350

seq1  AGGGCAGGCTTGAGTCCGTCGTCTTCTTTTAAAACATGGGGAAACTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCTTGAGTCCGTCGTCTTCTTTTAAAACATGGGGAAACTGAGG  400

seq1  CTCAGAGAGAGGAAGGGACCTGACTTGGGGCATGAAGTCTGTGTCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGAGGAAGGGACCTGACTTGGGGCATGAAGTCTGTGTCCCTGA  450

seq1  AATGCTTCATACAATGACCCCAATGACCTTTGACAGGTAAGAACTGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCATACAATGACCCCAATGACCTTTGACAGGTAAGAACTGCACC  500

seq1  TCATATCTTACTGTGGCATTGTAAGGATTTCAGGGTCAAATTCCTGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTTACTGTGGCATTGTAAGGATTTCAGGGTCAAATTCCTGGTTC  550

seq1  CAGCAGTTCCAACAGACAGGGCTCAGCCACGATACACCAGCCAAC-AAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCAGTTCCAACAGACAGGGCTCAGCCACGATACACCAGCCAACAAAGG  600

seq1  AGAGGTGAGAAACAGAGAGATTTAGTCAACGCATATTGAG-AAGAGGGGC  648
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AGAGGTGAGAAACAGAGAGATTTAGTC-ACGCATATTGAGAAAGAGGGGC  649

seq1  CGGTAAAGGAAGAGAT-AAAGGAATCCAGGGATCCCAAGTTCACTGTAAA  697
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGGTAAAGGAAGAGATAAAAGGAATCCAGGGATCCCAAGTTCACTGTAAA  699

seq1  GGTACCGATGAGAACTCT-GGGTTCAAATAGAGGAAGACTTGGGGCAAGG  746
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GGTACCGATGAGAACTCTGGGGTTCAAATAGAGGAAGACTT-GGGCAAGG  748

seq1  TTAAGAGGTATGCATAATTAAACACACAATTAAGTGATCATGGTCAAGGT  796
      |||||| |||||||||||| ||| ||||||||| ||||||||||||||| 
seq2  TTAAGATGTATGCATAATTTAAC-CACAATTAAATGATCATGGTCAAGGG  797

seq1  GTGGTCTTACCCATAATTCTTTGAGTCCTGTAAGGAGATCTGA  839
       |||||||||||||||||| ||||||||||||||||| |||||
seq2  TTGGTCTTACCCATAATTC-TTGAGTCCTGTAAGGAG-TCTGA  838