BAC Information

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BAC

Clone NameB6Ng01-127N14
Chromosome4 (Build37)
Map Location 34,769,329 - 34,904,713
singlet/doubletdoublet
Overlap geneZfp292, Cga, Mobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127N14.bB6Ng01-127N14.g
ACCDH929856DH929857
length2691,066
definitionDH929856|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N14, 5' end.DH929857|Mus musculus domesticus DNA, BAC clone: B6Ng01-127N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,769,329 - 34,769,597)(34,903,611 - 34,904,713)
sequence
gaattccacatatctaagtatattgaggtcctagagtgttaaacattgtt
ttttacttgttcaagttttaaaaaattcattatctcttgaaaatatgata
tctttgaatctcatcagttccttctaaaacctgaattcctgttgaaagct
catatggcaccaattgtataattatttcccacagttacctccattaaact
aactcttaatatttgaagtgtgtgtgctaattcctctccctctatttata
tgtgtgtgtgtgtgtgttt
gaattcttctggtagacagttgtggctccctctcagagctctgtgtacat
aatgacgcggccgcccaaagcacagcacgttccgtgggctcttcgcaggg
gctccttcccgtctgtctcagagcactgatcattgcagatagtcatggag
tcagctataaacccgaagtcatgtttatccttggaattaccctcttcctt
tccaatacacaatctgctgtcagacgttaactcagaatacgagaacctgc
agttttgattttcatgcccttgcttgtttataccccaggctagcctcagc
ctcctaaatattgggataacagttgttgtaccaccatgctgagttcacaa
gaaccactggagactctcgatgggaagagcagatttctcttatgcttgga
gtggctatttcctttcctcgcaggaggcgcatgggtctttctttgctgtt
cacaccctgctatggtcaggagctctctgctccagcatagcaacacccaa
tccctgagccagtctcacctctctgctgccacagctcagtcccctctacc
tctaaagctcagatccatatcagagtgtgtattaacagaaaactcttcct
agaaaacacttcatgccggcgcggagtgactggtgtcgggtttgtgcttc
tgaaccacacaggaaggaatcagagaagggggctgaggtgtatggcatcc
atgcatagatcagtgcatttaacctgcccctgagccactcactcactcac
acactacactggacaggtgaagagactgagacctgtggcttactcgatta
agcaaacatttatttgaacctgattatcagcactggggatacaaggccaa
cgcgccggcacagtcatagatctacctgggatgcccaagagcagaatgaa
tgcttttcttagcacaatgtcattgtccgcagcggaaagtctgcccttca
gctgatttcctatccacgacaatcagaaccagcactgtatgtaggatctc
tgttcagtttggttacgatgctcacagtatcctgccttgcagtgatctgg
acgctaatactaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34769329_34769597
seq2: B6Ng01-127N14.b_46_314

seq1  GAATTCCACATATCTAAGTATATTGAGGTCCTAGAGTGTTAAACATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATATCTAAGTATATTGAGGTCCTAGAGTGTTAAACATTGTT  50

seq1  TTTTACTTGTTCAAGTTTTAAAAAATTCATTATCTCTTGAAAATATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGTTCAAGTTTTAAAAAATTCATTATCTCTTGAAAATATGATA  100

seq1  TCTTTGAATCTCATCAGTTCCTTCTAAAACCTGAATTCCTGTTGAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATCTCATCAGTTCCTTCTAAAACCTGAATTCCTGTTGAAAGCT  150

seq1  CATATGGCACCAATTGTATAATTATTTCCCACAGTTACCTCCATTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGCACCAATTGTATAATTATTTCCCACAGTTACCTCCATTAAACT  200

seq1  AACTCTTAATATTTGAAGTGTGTGTGCTAATTCCTCTCCCTCTATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAATATTTGAAGTGTGTGTGCTAATTCCTCTCCCTCTATTTATA  250

seq1  TGTGTGTGTGTGTGTGTTT  269
      |||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTTT  269

seq1: chr4_34903611_34904713
seq2: B6Ng01-127N14.g_69_1134 (reverse)

seq1  TGCCTAGTTATTGGCCGTTCCAGATTTCACTGACAAGGCAGAGAATACCT  50
      ||||||| |||| ||   ||||||  |||||| ||||||  || ||||  
seq2  TGCCTAG-TATTAGC--GTCCAGA--TCACTG-CAAGGC--AGGATAC--  40

seq1  GGTGAGCATCGTTTATACAAACTTGAGACAGGAGATTCTTAAACATTACA  100
       ||||||||||  ||  ||||| ||| ||| ||||| ||   ||| ||||
seq2  TGTGAGCATCG--TAACCAAAC-TGA-ACA-GAGATCCT---ACA-TACA  81

seq1  GTGCTGTGTCTGGATTGTCGTGGGATAGGGAAATCAGCCTAGAAGGGCAG  150
      ||||||  ||| ||||||||| ||||| ||||||||||   |||||||||
seq2  GTGCTGGTTCT-GATTGTCGT-GGATA-GGAAATCAGC--TGAAGGGCAG  126

seq1  ACTTTCCGCTGCGGACAATGACATTGTGCCTACAGAAAAGCCTTTCATTT  200
      |||||||||||||||||||||||||||| ||| ||||||| | |||| ||
seq2  ACTTTCCGCTGCGGACAATGACATTGTG-CTA-AGAAAAG-CATTCA-TT  172

seq1  CTGCTCTTTGGGGCATCCCAGGTTAGATCCTATGGACTGTGCCGGCCGCC  250
      ||||||||  |||||||||||| ||||| |||| ||||||||||||   |
seq2  CTGCTCTT--GGGCATCCCAGG-TAGAT-CTAT-GACTGTGCCGGC--GC  215

seq1  GTTGGCCCTTGTATCCCCAGTGCCTGATAATCAGGTTC-AATAAATGTTT  299
      ||||| |||||||||||||||| ||||||||||||||| |||||||||||
seq2  GTTGG-CCTTGTATCCCCAGTG-CTGATAATCAGGTTCAAATAAATGTTT  263

seq1  GCTTAATCGAGTAAGCCACAGGTTCTCAGTCTCTTCACCTGTCCAGTGTA  349
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTTAATCGAGTAAGCCACAGG-TCTCAGTCTCTTCACCTGTCCAGTGTA  312

seq1  GTGTGTGAGTGAGTGAGTGGCTCAGGGGCAGGTTAAATGCACTGATCTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGTGAGTGAGTGGCTCAGGGGCAGGTTAAATGCACTGATCTAT  362

seq1  GCATGGATGCCATACACCTCAGCCCCCTTCTCTGATTCCTTCCTGTGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATGCCATACACCTCAGCCCCCTTCTCTGATTCCTTCCTGTGTGG  412

seq1  TTCAGAAGCACAAACCCGACACCAGTCACTCCGCGCCGGCATGAAGTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGCACAAACCCGACACCAGTCACTCCGCGCCGGCATGAAGTGTT  462

seq1  TTCTAGGAAGAGTTTTCTGTTAATACACACTCTGATATGGATCTGAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAGAGTTTTCTGTTAATACACACTCTGATATGGATCTGAGCTT  512

seq1  TAGAGGTAGAGGGGACTGAGCTGTGGCAGCAGAGAGGTGAGACTGGCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTAGAGGGGACTGAGCTGTGGCAGCAGAGAGGTGAGACTGGCTCA  562

seq1  GGGATTGGGTGTTGCTATGCTGGAGCAGAGAGCTCCTGACCATAGCAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGGTGTTGCTATGCTGGAGCAGAGAGCTCCTGACCATAGCAGGG  612

seq1  TGTGAACAGCAAAGAAAGACCCATGCGCCTCCTGCGAGGAAAGGAAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAGCAAAGAAAGACCCATGCGCCTCCTGCGAGGAAAGGAAATAG  662

seq1  CCACTCCAAGCATAAGAGAAATCTGCTCTTCCCATCGAGAGTCTCCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAAGCATAAGAGAAATCTGCTCTTCCCATCGAGAGTCTCCAGTG  712

seq1  GTTCTTGTGAACTCAGCATGGTGGTACAACAACTGTTATCCCAATATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGAACTCAGCATGGTGGTACAACAACTGTTATCCCAATATTTA  762

seq1  GGAGGCTGAGGCTAGCCTGGGGTATAAACAAGCAAGGGCATGAAAATCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAGGCTAGCCTGGGGTATAAACAAGCAAGGGCATGAAAATCAA  812

seq1  AACTGCAGGTTCTCGTATTCTGAGTTAACGTCTGACAGCAGATTGTGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGGTTCTCGTATTCTGAGTTAACGTCTGACAGCAGATTGTGTAT  862

seq1  TGGAAAGGAAGAGGGTAATTCCAAGGATAAACATGACTTCGGGTTTATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGAAGAGGGTAATTCCAAGGATAAACATGACTTCGGGTTTATAG  912

seq1  CTGACTCCATGACTATCTGCAATGATCAGTGCTCTGAGACAGACGGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCATGACTATCTGCAATGATCAGTGCTCTGAGACAGACGGGAAG  962

seq1  GAGCCCCTGCGAAGAGCCCACGGAACGTGCTGTGCTTTGGGCGGCCGCGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTGCGAAGAGCCCACGGAACGTGCTGTGCTTTGGGCGGCCGCGT  1012

seq1  CATTATGTACACAGAGCTCTGAGAGGGAGCCACAACTGTCTACCAGAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTACACAGAGCTCTGAGAGGGAGCCACAACTGTCTACCAGAAGA  1062

seq1  ATTC  1103
      ||||
seq2  ATTC  1066