BAC Information

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BAC

Clone NameB6Ng01-127O16
Chromosome4 (Build37)
Map Location 62,971,275 - 63,106,521
singlet/doubletdoublet
Overlap geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn
Upstream geneFkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O16.bB6Ng01-127O16.g
ACCDH929906DH929907
length1,136795
definitionDH929906|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O16, 5' end.DH929907|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,105,375 - 63,106,521)(62,971,275 - 62,972,071)
sequence
gaattcaaggcctgcctgggccacttagtgagactgtgccagcggtgggg
ggtggaacagttgctgaacaggtgtgagggagggcctgggtgcaatgctc
agtactttaaaaaaaaaaaaaaaaagagccgggtgtggtggtgcacgcct
ttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgagg
ccagcctggtctacagagtgagttccaggacagctagggctacacagaga
aaccctgtctcaaaaatcccaaaaaaaaaaaaaccaaacaaacaaacaaa
aaagggcaattaagtaatgaagttaatttcattttatacttttaagtaat
ttctgactaatacagttattttattaaaaaaaaactaatatatttatttt
gaggggtatctaagatttagggacaaatcacgcatccagtatagggttct
accactgagcctccctccatctttattagcaagccacagattagaacata
agagacacgtgttctagttaatgacccagtgaggtttgcagtattcactg
gagcctgtaattcacatccaaggtcacagttctgtgggttttcttagatg
agtaacatgacgtgccctcccacgtagctccccctccctaaaaaccccat
gccccacttagcctccctccccatcagcctctctgtttcccagttcccaa
gcccctctgatcatcccaccgtttctatgtttctgtctggctccgtgttt
ctctctgcccacagcatcacagagttatatgcactctcttctgggccttt
ccacataagccttttcctttgccaagttatctttctgacctatttattga
gacacagcatcacgcatcgctgtgagagcgttacatgcattaccacctgc
catgaccagcctgggggagtaacgcttccatctgcacagctgtgctgggg
accttgggcagtggttccctgtgctgtttgttactgaatggacaaggatt
gctgtaagcatagttactctgcagtaacattgaggcatcacatacagttt
tatttccacaatgaactctatgctaatgctcacaaatttctggctgcagt
tttactagctgcttggcaagagtagcaaaggctgca
gaattcagagcctatacaggctgtgggggaaaagacgtgtggtaggtagg
acattctgatacttgactgatagcttggaagtttactgtgtaacagagcc
aagggtgtgtatggagcaggactctgtggccagctcagtgtcctgccagg
cccctgggatccagccaccttgcaacaagccaccagagagtgtcaggcct
gcaggtgtccactctgagccagccttggccttagcacaactccgtgatcc
cctactgcccaccccaacatgacaggttcttgctattgcatggctcagca
gtccatgtttcttctagcctgctcccgacagctcttcagcactgaagtga
ccagtctgggaaggatccagagtagccagcaacatgctggccgtgggaaa
gtatctgttacctaaaaatagagctgacgtgctaatagccctcaggagca
aggggatgaggtcactgcccagcccacgagtgcaggaggggtgcctgtca
gagccgcccactgctgctctcctcagccctgaggatgtgggtaagaaggg
ctttagcaggatgggttgtttcttacctcgctattccctttgtgtaacgt
ggccgtggctcctagcccacccttggcctcagtcttactatgttgaaaat
ctagaaaggatgtatgccaagattattttgaggtctaaagccctaaggcc
actttctcggcgaggttgtggtttttgctgtggagtgggagcaaccagca
gacgtatcctaagacctgagttcaaggtcaaactgggttctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63105375_63106521
seq2: B6Ng01-127O16.b_49_1184 (reverse)

seq1  TGCAGCTCTTTGCTTACTCTTTGCAAAGGCAGCCTAGTAAAAACTGCAGC  50
      |||||| |||||| |||||||  |||  |||| ||||| |||||||||||
seq2  TGCAGC-CTTTGC-TACTCTTGCCAA--GCAG-CTAGT-AAAACTGCAGC  44

seq1  CAG-AATTTGTGAAGCATTAGCATAGAAGTTCA-TGTGGAAAATAAAACT  98
      ||| |||||||| ||||||||||||| |||||| ||||| ||||||||||
seq2  CAGAAATTTGTG-AGCATTAGCATAG-AGTTCATTGTGG-AAATAAAACT  91

seq1  GTATGTGAATGGCCTCCAATGTTTACTGCAGAGTAACTATTGCTTACAGC  148
      ||||||||   |||| ||||| ||||||||||||||||| ||||||||||
seq2  GTATGTGA--TGCCT-CAATG-TTACTGCAGAGTAACTA-TGCTTACAGC  136

seq1  AATCCTTGGTCCATTCAGTAACAAACAGCACAGGGAACCACTG-CCAAGG  197
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  AATCCTT-GTCCATTCAGTAACAAACAGCACAGGGAACCACTGCCCAAGG  185

seq1  TCCCCAGCACAGCTGTGCAGATGGAAGCGTTACTCCCCCAGGCTGGTCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACAGCTGTGCAGATGGAAGCGTTACTCCCCCAGGCTGGTCAT  235

seq1  GGCAGGTGGTAATGCATGTAACGCTCTCACAGCGATGCGTGATGCTGTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGTAATGCATGTAACGCTCTCACAGCGATGCGTGATGCTGTGT  285

seq1  CTCAATAAATAGGTCAG-AAGATAACTTGGCAAAGGAAAAGGCTTATGTG  346
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCAATAAATAGGTCAGAAAGATAACTTGGCAAAGGAAAAGGCTTATGTG  335

seq1  GAAAGGCCCAGAAGAGAGTGCATATAACTCTGTGATGCTGTGGGCAGAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCCAGAAGAGAGTGCATATAACTCTGTGATGCTGTGGGCAGAGA  385

seq1  GAAACACGGAGCCAGACAGAAACATAGAAACGGTGGGATGATCAGAGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACGGAGCCAGACAGAAACATAGAAACGGTGGGATGATCAGAGGGG  435

seq1  CTTGGGAACTGGGAAACAGAGAGGCTGATGGGGAGGGAGGCTAAGTGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAACTGGGAAACAGAGAGGCTGATGGGGAGGGAGGCTAAGTGGGG  485

seq1  CATGGGGTTTTTAGGGAGGGGGAGCTACGTGGGAGGGCACGTCATGTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGTTTTTAGGGAGGGGGAGCTACGTGGGAGGGCACGTCATGTTAC  535

seq1  TCATCTAAGAAAACCCACAGAACTGTGACCTTGGATGTGAATTACAGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAGAAAACCCACAGAACTGTGACCTTGGATGTGAATTACAGGCT  585

seq1  CCAGTGAATACTGCAAACCTCACTGGGTCATTAACTAGAACACGTGTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAATACTGCAAACCTCACTGGGTCATTAACTAGAACACGTGTCTC  635

seq1  TTATGTTCTAATCTGTGGCTTGCTAATAAAGATGGAGGGAGGCTCAGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTAATCTGTGGCTTGCTAATAAAGATGGAGGGAGGCTCAGTGG  685

seq1  TAGAACCCTATACTGGATGCGTGATTTGTCCCTAAATCTTAGATACCCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCTATACTGGATGCGTGATTTGTCCCTAAATCTTAGATACCCCT  735

seq1  CAAAATAAATATATTAGTTTTTTTTTAATAAAATAACTGTATTAGTCAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATATATTAGTTTTTTTTTAATAAAATAACTGTATTAGTCAGA  785

seq1  AATTACTTAAAAGTATAAAATGAAATTAACTTCATTACTTAATTGCCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTAAAAGTATAAAATGAAATTAACTTCATTACTTAATTGCCCTT  835

seq1  TTTTGTTTGTTTGTTTGGTTTTTTTTTTTTTGGGATTTTTGAGACAGGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTGGTTTTTTTTTTTTTGGGATTTTTGAGACAGGGT  885

seq1  TTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  935

seq1  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTA  985

seq1  AAGGCGTGCACCACCACACCCGGCTCTTTTTTTTTTTTTTTTTAAAGTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCACCACCACACCCGGCTCTTTTTTTTTTTTTTTTTAAAGTAC  1035

seq1  TGAGCATTGCACCCAGGCCCTCCCTCACACCTGTTCAGCAACTGTTCCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTGCACCCAGGCCCTCCCTCACACCTGTTCAGCAACTGTTCCAC  1085

seq1  CCCCCACCGCTGGCACAGTCTCACTAAGTGGCCCAGGCAGGCCTTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCGCTGGCACAGTCTCACTAAGTGGCCCAGGCAGGCCTTGAATT  1135

seq1  C  1147
      |
seq2  C  1136

seq1: chr4_62971275_62972071
seq2: B6Ng01-127O16.g_71_865

seq1  GAATTCAGAGCCTATACAGGCTGTGGGGGAAAAGACGTGTGGTAGGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCTATACAGGCTGTGGGGGAAAAGACGTGTGGTAGGTAGG  50

seq1  ACATTCTGATACTTGACTGATAGCTTGGAAGTTTACTGTGTAACAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGATACTTGACTGATAGCTTGGAAGTTTACTGTGTAACAGAGCC  100

seq1  AAGGGTGTGTATGGAGCAGGACTCTGTGGCCAGCTCAGTGTCCTGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGTATGGAGCAGGACTCTGTGGCCAGCTCAGTGTCCTGCCAGG  150

seq1  CCCCTGGGATCCAGCCACCTTGCAACAAGCCACCAGAGAGTGTCAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGATCCAGCCACCTTGCAACAAGCCACCAGAGAGTGTCAGGCCT  200

seq1  GCAGGTGTCCACTCTGAGCCAGCCTTGGCCTTAGCACAACTCCGTGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTCCACTCTGAGCCAGCCTTGGCCTTAGCACAACTCCGTGATCC  250

seq1  CCTACTGCCCACCCCAACATGACAGGTTCTTGCTATTGCATGGCTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCCACCCCAACATGACAGGTTCTTGCTATTGCATGGCTCAGCA  300

seq1  GTCCATGTTTCTTCTAGCCTGCTCCCGACAGCTCTTCAGCACTGAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTTTCTTCTAGCCTGCTCCCGACAGCTCTTCAGCACTGAAGTGA  350

seq1  CCAGTCTGGGAAGGATCCAGAGTAGCCAGCAACATGCTGGCCGTGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGGGAAGGATCCAGAGTAGCCAGCAACATGCTGGCCGTGGGAAA  400

seq1  GTATCTGTTACCTAAAAATAGAGCTGACGTGCTAATAGCCCTCAGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTTACCTAAAAATAGAGCTGACGTGCTAATAGCCCTCAGGAGCA  450

seq1  AGGGGATGAGGTCACTGCCCAGCCCACGAGTGCAGGAGGGGTGCCTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGAGGTCACTGCCCAGCCCACGAGTGCAGGAGGGGTGCCTGTCA  500

seq1  GAGCCGCCCACTGCTGCTCTCCTCAGCCCTGAGGATGTGGGTAAGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCCCACTGCTGCTCTCCTCAGCCCTGAGGATGTGGGTAAGAAGGG  550

seq1  CTTTAGCAGGATGGGTTGTTTCTTACCTCGCTATTCCC-TTGTGTAACGT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTTAGCAGGATGGGTTGTTTCTTACCTCGCTATTCCCTTTGTGTAACGT  600

seq1  GGCCGTGGCTCCTAGCCCACCC-TGGCCTCAGTCTTACTATGTTGAAAAT  648
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCCGTGGCTCCTAGCCCACCCTTGGCCTCAGTCTTACTATGTTGAAAAT  650

seq1  CTAGAAGGAATGTATGCCAAGATTATTTTGAGGTCTAAAGCCCTAAGGCC  698
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGGATGTATGCCAAGATTATTTTGAGGTCTAAAGCCCTAAGGCC  700

seq1  ACTTTCTCGGCGAGGTTGTGG-TTTTGCTGTGGAGTGGGGAGCAACCCAG  747
      ||||||||||||||||||||| |||||||||||||| |||||||| ||||
seq2  ACTTTCTCGGCGAGGTTGTGGTTTTTGCTGTGGAGT-GGGAGCAA-CCAG  748

seq1  CAGGACGTATCCTAAGAACCTGAGTTCAAAGGTCAGACCTGGGTTC-CTG  796
      || ||||||||||||| |||||||||| ||||||| | |||||||| |||
seq2  CA-GACGTATCCTAAG-ACCTGAGTTC-AAGGTCA-AACTGGGTTCTCTG  794

seq1  G  797
      |
seq2  G  795