BAC Information

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BAC

Clone NameB6Ng01-128D13
Chromosome4 (Build37)4 (Build37)
Map Location 145,731,196 - 145,731,826145,658,502 - 145,659,720
singlet/doubletsingletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D13.bB6Ng01-128D13.g
ACCDH930133DH930134
length1,1451,206
definitionDH930133|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D13, 5' end.DH930134|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,731,196 - 145,731,826)(145,658,502 - 145,659,720)
sequence
gaattctctgatgaatcctcagactgcctttgaaagtaaagcatttgtca
cattcagtgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcaaacagccattttcagtaaaggatttgtcacattcactacatttgt
agggtttctctcctgtatgaattctctgatgaatcctcagactgcctttg
aaagtaaagcatttttcacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaatcctcaaactgaattttttagtaaaggatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
attctcagatggccattttcagtaaaggatttgtcacatcgactacattt
gtaaggtttctcacctgtatgatttctctgatgaattctcagatggccat
tttcagtaaaggatttgtcacattgactacatttgtaaggtttctctcct
gtatgaattctctgatgaatattaagatgggatttttgggtaaagcattt
gtcacattcactgcatttgtaaggtttatctcctgtatgaatcctctgat
gaattctcagattgcctttttcagtaaagcatttctcacatacaatgcat
ttgtaaggtttctctcctgtatgaattctctgatgaatattaagatgaga
tttttgggtaaagcatttgtcacattcactacatttgtaaggtttctctc
ctgtatgaattctctgatgaatattaagatgaaatttgtgggtaaagcat
ttgtcacattcactacatttataaattttctcttctgcatgaattccctt
gatggatactaagatcgatctgatgggtaaagcatttgtcacttttacta
cttctgtaatgttcttttcatgataattctctgctgactttgaagtttgt
ctcctctgggtagatatttgtcaaatttactacatttgtaagggtcactc
cagtatatttcgttcaccatgactttatgttagaaattaaagccttctca
gattctgcatttcgttgggttttttcttctgcatgtggattccttgaatg
ggaactacggtaagaaaacaaagtaaactgctacagaagtcattg
gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaaca
tcagtctgacaaatcaacagatatttcaaacagtagagcaacattataaa
tgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattcac
tggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaa
tcctttattttggccaatctcttagaatgtaacagataatttatacaggc
aagaatcttaacaaatataatatatgctgaaatatctttgacttcatttc
agtgcagaaaaaatatgtaaaaaaattttttatgggaaaaatagttctcc
tggggaaatgtggcatatgttttacacgggtaatattcttttcaacagtc
agtgctctaaactagagaattattatgaatctgaaaacttttgaaaacct
tcatgcaatcttcaaatctaatgtcaactattatgctggcagtaactctg
aatatatgataatgaagaaacattttcattaaacttttacttgttcaccc
tcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgatgt
tgtgcaacaattcatggagatagaaatgatccattccagaaggaaactta
aagagtgtactatcgccttcaaaatgtctaataaaactggcagcattttg
tatatttaattcaaatgaagaaattgacacaaattatacttgatagagta
tttgacaaactgagccaccaagaatgcatgttcttaatcctataatacac
ctacagatgtgaagtgtgctttgagtatccagtattcattattcttatca
cgtcaatgtgacaatgatttattggtttcacgtttcagatagtgactgac
tatgagtccctatgctctgtcaacatctcttcctcattgccctgtaataa
agctgaatatttaacagttgacttgctgttttcagttgcactgatataga
tgaataaatgttgcatcatccgctgggacctatttctcataaagatttgc
tcgaagtcctgaaaatttttctgtacctgtacctgaccttaaatttgtga
atttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145731196_145731826
seq2: B6Ng01-128D13.b_569_1193

seq1  ATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCATTTGT  50

seq1  AAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGCCTTTT  100

seq1  TCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCTCCTGT  150

seq1  ATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCATTTGT  200

seq1  CACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGA  250

seq1  ATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTGCATTT  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTACATTT  300

seq1  ATAAATTTTCTCTTCTGCATGAATTCCC-TGATGGATACTAAGATCGATC  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAAATTTTCTCTTCTGCATGAATTCCCTTGATGGATACTAAGATCGATC  350

seq1  TGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGAAATGTTTCTTTTC  399
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAATG-TTCTTTTC  399

seq1  ATGATAAATTCTCTGCTGACTTTGAAGTTTGTCT-CTCTGGGTAAGATAT  448
      ||||| |||||||||||||||||||||||||||| |||||||| ||||||
seq2  ATGAT-AATTCTCTGCTGACTTTGAAGTTTGTCTCCTCTGGGT-AGATAT  447

seq1  TTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCGTTT  498
      ||||||||||||||||||||||||||| ||||||||||| ||||||| ||
seq2  TTGTCAAATTTACTACATTTGTAAGGG-TCACTCCAGTA-TATTTCG-TT  494

seq1  CACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGCATTTC  548
      ||||||||||||||| |||||||| |||||||||||||||||||||||| 
seq2  CACCATGACTTTATG-TTAGAAATTAAAGCCTTCTCAGATTCTGCATTT-  542

seq1  CGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAG-ACTAATGGT  597
      ||||| ||||||||||||||||||||||||| ||| || | ||||  |  
seq2  CGTTGGGTTTTTTCTTCTGCATGTGGATTCCTTGAATGGGAACTACGGTA  592

seq1  AGAAAACAAAGTTAAACTGTTTACAG-AGTCATTG  631
      ||||||||||| |||||||  ||||| ||||||||
seq2  AGAAAACAAAG-TAAACTG-CTACAGAAGTCATTG  625

seq1: chr4_145658502_145659720
seq2: B6Ng01-128D13.g_68_1273 (reverse)

seq1  TGAAAATCACAAATATTAAGTTTAAGTTACAGGTTTACAG-AAAATATTC  49
      ||||| |||||||| |||||  | || ||||||  ||||| ||||| |||
seq2  TGAAATTCACAAAT-TTAAG-GTCAGGTACAGG--TACAGAAAAATTTTC  46

seq1  ATGACTTC-AGCAAATACTTTATGAGAAATA-GTTCCAGC-GATGATGCA  96
      | |||||| ||||||| |||||||||||||| || ||||| |||||||||
seq2  AGGACTTCGAGCAAAT-CTTTATGAGAAATAGGTCCCAGCGGATGATGCA  95

seq1  ACATTTATTCATCTAATTATCAGTGCAAACTGAAAACAGCCAAGTCAACC  146
      |||||||||||||||  ||||||||| |||||||||||| ||||||||| 
seq2  ACATTTATTCATCTA--TATCAGTGC-AACTGAAAACAG-CAAGTCAAC-  140

seq1  TTGTTAAAATATTCAGCTTTATTTACAGGGCAATGAGGAAGGAGATGTTG  196
       |||| ||||||||||||||| |||||||||||||||||| |||||||||
seq2  -TGTT-AAATATTCAGCTTTA-TTACAGGGCAATGAGGAA-GAGATGTTG  186

seq1  ACAGAGCATAAGGGACTCATAGTCAGTCACTATCCTGAAACGTGAAACCA  246
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGAGCAT-AGGGACTCATAGTCAGTCACTAT-CTGAAACGTGAAACCA  234

seq1  ATAAATCATTTGTCACATTGACGTGATAAGAATAATGAATACTGGATACT  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCA-TTGTCACATTGACGTGATAAGAATAATGAATACTGGATACT  283

seq1  CAAAGCACACTTCACATCTGTAGGTGTATTATAGGATTAAGAACATGCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACACTTCACATCTGTAGGTGTATTATAGGATTAAGAACATGCAT  333

seq1  TCTTGGTGGCTCAGTTTGTCAAATACTCTATCAAGTATAATTTGTGTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGGCTCAGTTTGTCAAATACTCTATCAAGTATAATTTGTGTCAA  383

seq1  TTTCTTCATTTGAATTAAATATACAAAATGCTGCCAGTTTTATTAGACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTGAATTAAATATACAAAATGCTGCCAGTTTTATTAGACAT  433

seq1  TTTGAAGGCGATAGTACACTCTTTAAGTTTCCTTCTGGAATGGATCATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGCGATAGTACACTCTTTAAGTTTCCTTCTGGAATGGATCATTT  483

seq1  CTATCTCCATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACC  533

seq1  TGACTTCATCATATAATATTTGAGGGTGAACAAGTAAAAGTTTAATGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATCATATAATATTTGAGGGTGAACAAGTAAAAGTTTAATGAAA  583

seq1  ATGTTTCTTCATTATCATATATTCAGAGTTACTGCCAGCATAATAGTTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTCATTATCATATATTCAGAGTTACTGCCAGCATAATAGTTGA  633

seq1  CATTAGATTTGAAGATTGCATGAAGGTTTTCAAAAGTTTTCAGATTCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATTTGAAGATTGCATGAAGGTTTTCAAAAGTTTTCAGATTCATA  683

seq1  ATAATTCTCTAGTTTAGAGCACTGACTGTTGAAAAGAATATTACCCGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTCTAGTTTAGAGCACTGACTGTTGAAAAGAATATTACCCGTGT  733

seq1  AAAACATATGCCACATTTCCCCAGGAGAACTATTTTTCCCATAAAAAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATGCCACATTTCCCCAGGAGAACTATTTTTCCCATAAAAAATT  783

seq1  TTTTTACATATTTTTTCTGCACTGAAATGAAGTCAAAGATATTTCAGCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATATTTTTTCTGCACTGAAATGAAGTCAAAGATATTTCAGCAT  833

seq1  ATATTATATTTGTTAAGATTCTTGCCTGTATAAATTATCTGTTACATTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATTTGTTAAGATTCTTGCCTGTATAAATTATCTGTTACATTCT  883

seq1  AAGAGATTGGCCAAAATAAAGGATTCAAACCGTCAATGTATTTGAAAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTGGCCAAAATAAAGGATTCAAACCGTCAATGTATTTGAAAAGT  933

seq1  TTCCCTTTTGGAAGAATTCTCCAGTGAATTTTAAGATGATATTTCTTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTGGAAGAATTCTCCAGTGAATTTTAAGATGATATTTCTTGTT  983

seq1  AAAGGATTATCTCATTCATTTCATTTATAATGTTGCTCTACTGTTTGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTATCTCATTCATTTCATTTATAATGTTGCTCTACTGTTTGAAA  1033

seq1  TATCTGTTGATTTGTCAGACTGATGTTGTGGGTACTGCATTTATCACATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTGATTTGTCAGACTGATGTTGTGGGTACTGCATTTATCACATA  1083

seq1  CAAAATACTTGTAAGGTTTTTTTAAATGTATAAATTATCTGATTAATTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTTGTAAGGTTTTTTTAAATGTATAAATTATCTGATTAATTCT  1133

seq1  CAGTCTGCCTTTATTAGTAAAGCATTTATCACATTCACTGCATTTTTGTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCCTTTATTAGTAAAGCATTTATCACATTCACTGCATTTTTGTA  1183

seq1  AGTTTTCTCTACTGTATGAATTC  1219
      |||||||||||||||||||||||
seq2  AGTTTTCTCTACTGTATGAATTC  1206