BAC Information

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BAC

Clone NameB6Ng01-128E19
Chromosome4 (Build37)
Map Location 48,292,026 - 48,442,613
singlet/doubletdoublet
Overlap geneTxndc4, Invs
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17
Downstream geneTex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128E19.bB6Ng01-128E19.g
ACCDH930187DH930188
length4851,099
definitionDH930187|Mus musculus domesticus DNA, BAC clone: B6Ng01-128E19, 5' end.DH930188|Mus musculus domesticus DNA, BAC clone: B6Ng01-128E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,442,123 - 48,442,613)(48,292,026 - 48,293,123)
sequence
cacactggttctgatcttcctccagggttaaagctttggcttgttttttg
attgactggatggttgcagattgtaagagaacttctttgatcttccactg
ttgtcaagatgtatagactgcaaactgttcactgttaaaagcaaatgtat
atttatattattgatcttaatggaggagaggagttgtttgtggtaagata
aaaggatttgggatgacactctccctggtgatgacgagctcttcctcacc
ttactgacagggcatctctttaaagcaggaactggactgggaggggttgt
aagtggacgctacatcttgagtgggtaggagggtaatacagcatccttct
ctgcatgcctttcacatggcacatggtttatacacagcttagaattcttt
tgccacatacttttataagtcaacaaaaaaagttttagggatgacataga
taggaatcttggggtgggttttttgtttttggatt
gaattctcctatttgcaggttccaagccctgactgtgctttcgcaggcct
tgtggaccgcaggcttaaggagccaaaagaacggccaaagtgaaggtagt
gcccgggggtgcacgcctcgccagcggaggagagtcgaggcaagcagggg
gctgcaccgttccccctcgcggagggcgggaggcgttcagggacacagtc
ggagggtttgtcaccccgacatacactcaccaggagcagcaaggagcatc
tgaggtctgctaaagacaggaagaccgcaggattcatggtaacgacgggg
tcgacggcggggtcaggaggtggcggctgggactggaccgggctagaaaa
gggctgggctccggggccggcggcagcggcacctcgtcctctcgacccgg
agctccagcggcgaacacccgggacaacttccagagaggcctctcacgcc
ctcacttccgggtcctgcccatctcgaagcacgtcgggaaatgtagtcca
tactgtagtttcattgaccatgtcatcggagagctgggactctctttccc
agtaagccctgtgcccacgacggccaagccatctgtgcgcggggctcttc
gggattggaagggaccgcgtacctctgtgcctccgggacgggaactacaa
ttcccagagggctgtgcagcctggagccccaggctacttcttcagagctc
ccgggctctagtgtcctggggtctgttcctgtgggcgcagtggcctggct
tggcggtaggggcggccccgtgagggttgtgcctcctggggcggccccgg
gacgccattcttggagtcaggggtgagtaggaagcggtccagcatcggcg
gctcgggtaggatggagagcaccgccccgggctgctgctgcgttttcttg
gcccgcctgatctgaggtgtggctgagcctccatccctgggctccaagct
gctgcctctctttctggtgctacttcctccggtaatataggagatcacca
ctgggggcttctgtcaatcaccttacccagggttgtttcataggttcctt
gaaacgtatgagatcatggatgggaaagcatgctttacactgtaaagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48442123_48442613
seq2: B6Ng01-128E19.b_49_539 (reverse)

seq1  AATCCAAAAACAAAAAACCCACCCCAAGATTCCTATCTATGTCATCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAAACAAAAAACCCACCCCAAGATTCCTATCTATGTCATCCCTA  50

seq1  AAACTTTTTTTGTTGACTTATAAAAGTATGTGGCAAAAGAATTCTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTTTGTTGACTTATAAAAGTATGTGGCAAAAGAATTCTAAGCT  100

seq1  GTGTATAAACCATGTGCCATGTGAAAGGCATGCAGAGAAGGATGCTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAACCATGTGCCATGTGAAAGGCATGCAGAGAAGGATGCTGTAT  150

seq1  TACCCTCCTACCCACTCAAGATGTAGCGTCCACTTACAACCCCTCCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCTACCCACTCAAGATGTAGCGTCCACTTACAACCCCTCCCAGT  200

seq1  CCAGTTCCTGCTTTAAAGAGATGCCCTGTCAGTAAGGTGAGGAAGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTGCTTTAAAGAGATGCCCTGTCAGTAAGGTGAGGAAGAGCTC  250

seq1  GTCATCACCAGGGAGAGTGTCATCCCAAATCCTTTTATCTTACCACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACCAGGGAGAGTGTCATCCCAAATCCTTTTATCTTACCACAAAC  300

seq1  AACTCCTCTCCTCCATTAAGATCAATAATATAAATATACATTTGCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCTCCTCCATTAAGATCAATAATATAAATATACATTTGCTTTTA  350

seq1  ACAGTGAACAGTTTGCAGTCTATACATCTTGACAACAGTGGAAGATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAACAGTTTGCAGTCTATACATCTTGACAACAGTGGAAGATCAAA  400

seq1  GAAGTTCTCTTACAATCTGCAACCATCCAGTCAATCAAAAAACAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTCTTACAATCTGCAACCATCCAGTCAATCAAAAAACAAGCCAA  450

seq1  AGCTTTAACCCTGGAGGAAGATCAGAACCAGTGTGGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAACCCTGGAGGAAGATCAGAACCAGTGTGGAATTC  491

seq1: chr4_48292026_48293123
seq2: B6Ng01-128E19.g_69_1167

seq1  GAATTCTCCTATTTGCAGGTTCCAAGCCCTGACTGTGCTTTCGCAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATTTGCAGGTTCCAAGCCCTGACTGTGCTTTCGCAGGCCT  50

seq1  TGTGGACCGCAGGCTTAAGGAGCCAAAAGAACGGCCAAAGTGAAGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCGCAGGCTTAAGGAGCCAAAAGAACGGCCAAAGTGAAGGTAGT  100

seq1  GCCCGGGGGTGCACGCCTCGCCAGCGGAGGAGAGTCGAGGCAAGCAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGGGTGCACGCCTCGCCAGCGGAGGAGAGTCGAGGCAAGCAGGGG  150

seq1  GCTGCACCGTTCCCCCTCGCGGAGGGCGGGAGGCGTTCAGGGACACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCGTTCCCCCTCGCGGAGGGCGGGAGGCGTTCAGGGACACAGTC  200

seq1  GGAGGGTTTGTCACCCCGACATACACTCACCAGGAGCAGCAAGGAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTTGTCACCCCGACATACACTCACCAGGAGCAGCAAGGAGCATC  250

seq1  TGAGGTCTGCTAAAGACAGGAAGACCGCAGGATTCATGGTAACGACGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGCTAAAGACAGGAAGACCGCAGGATTCATGGTAACGACGGGG  300

seq1  TCGACGGCGGGGTCAGGAGGTGGCGGCTGGGACTGGACCGGGCTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACGGCGGGGTCAGGAGGTGGCGGCTGGGACTGGACCGGGCTAGAAAA  350

seq1  GGGCTGGGCTCCGGGGCCGGCGGCAGCGGCACCTCGTCCTCTCGACCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGCTCCGGGGCCGGCGGCAGCGGCACCTCGTCCTCTCGACCCGG  400

seq1  AGCTCCAGCGGCGAACACCCGGGACAACTTCCAGAGAGGCCTCTCACGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCGGCGAACACCCGGGACAACTTCCAGAGAGGCCTCTCACGCC  450

seq1  CTCACTTCCGGGTCCTGCCCATCTCGAAGCACGTCGGGAAATGTAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCGGGTCCTGCCCATCTCGAAGCACGTCGGGAAATGTAGTCCA  500

seq1  TACTGTAGTTTCATTGACCATGTCATCGGAGAGCTGGGACTCTCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTTCATTGACCATGTCATCGGAGAGCTGGGACTCTCTTTCCC  550

seq1  AGTAAGCCCTGTGCCCACGACGGCCAAGCCATCTGTGCGCGGGGCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCCTGTGCCCACGACGGCCAAGCCATCTGTGCGCGGGGCTCTTC  600

seq1  GGGATTGGAAGGGACCGCGTACCTCTGTGCCTCCGGGACGGGAACTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAAGGGACCGCGTACCTCTGTGCCTCCGGGACGGGAACTACAA  650

seq1  TTCCCAGAGGGCTGTGCAGCCTGGAGCCCCAGGCTACTTCTTCAGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGGGCTGTGCAGCCTGGAGCCCCAGGCTACTTCTTCAGAGCTC  700

seq1  CCGGGCTCTAGTGTCCTGGGGTCTGTTCCTGTGGGCGCAGTGGCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTCTAGTGTCCTGGGGTCTGTTCCTGTGGGCGCAGTGGCCTGGCT  750

seq1  TGGCGGTAGGGGCGGCCCCGTGAGGGTTGTGCCTCCTGGGGCGGCCCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTAGGGGCGGCCCCGTGAGGGTTGTGCCTCCTGGGGCGGCCCCGG  800

seq1  GACGCCATTCTTGGAGTCAGGGGTGAGTAGGAAGCGGTCCAGCATCGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCATTCTTGGAGTCAGGGGTGAGTAGGAAGCGGTCCAGCATCGGCG  850

seq1  GCTCGGGTAGGATGGAGAGCACCGCCCCGGGCTGCTGCTGCGTTTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGTAGGATGGAGAGCACCGCCCCGGGCTGCTGCTGCGTTTTCTTG  900

seq1  GCCCGCCTGATCTGAGGTGTGGCCTGAGCCTCCATCCCTGGCCTCCAAGC  950
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GCCCGCCTGATCTGAGGTGTGG-CTGAGCCTCCATCCCTGGGCTCCAAGC  949

seq1  TGCTGCCTCTTCTTTCT-GTGCTACTTCCTCCGTTATATA-AGGAGAATC  998
      ||||||||| ||||||| ||||||||||||||| || ||| ||||| |||
seq2  TGCTGCCTC-TCTTTCTGGTGCTACTTCCTCCGGTA-ATATAGGAG-ATC  996

seq1  ACCACT-GGGGCTTCGGTCAATCA-CTTACCCAGGGTTGTTTCAGAGGGT  1046
      |||||| |||||||| |||||||| ||||||||||||||||||| ||| |
seq2  ACCACTGGGGGCTTCTGTCAATCACCTTACCCAGGGTTGTTTCATAGGTT  1046

seq1  CCGTGAAACG-AAGAGAACAGGGATGGGAAAGCATGCTGTAAACTGTAAA  1095
      || ||||||| | |||| || ||||||||||||||||| || ||||||||
seq2  CCTTGAAACGTATGAGATCATGGATGGGAAAGCATGCTTTACACTGTAAA  1096

seq1  GCG  1098
      |||
seq2  GCG  1099