BAC Information

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BAC

Clone NameB6Ng01-128F18
Chromosome4 (Build37)
Map Location 59,624,095 - 59,778,740
singlet/doubletdoublet
Overlap geneHsdl2, E130308A19Rik, LOC100041592
Upstream geneLOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1
Downstream gene1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128F18.bB6Ng01-128F18.g
ACCDH930231DH930232
length1,1691,147
definitionDH930231|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F18, 5' end.DH930232|Mus musculus domesticus DNA, BAC clone: B6Ng01-128F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,624,095 - 59,625,283)(59,777,577 - 59,778,740)
sequence
gaattcagtctaaaacctctacatatgagctgggtgtggtcatgcactgc
tttaatcttagcatttcctggtgcaggggggaagggtcagcagagacaga
taaatctctgagtttgaggtcagcctggtctatagaatgagtagccagag
ctatgtagagataccctgtctcaaaaaaccaaaccaatacaaactcctaa
tgtttttctatataataaaagtaacatagactaatggtagttttaagaac
tacttagttctgttatatgcaaactttctcctcctctatgctgttttctg
cctaactgtaatcttcccttcttcctttttgtttttgagctcatggtctg
ttgcttcagtctttatttttgcaatgtcccaaacttgctgaaccctccgt
gcttatgctgtgacctctctgttcaagacttagttctggatgacacaaac
tgcctggtttccccagagctgcatcaagactatcaaatcttgttagacaa
aaatcaaagcagtaatatcagctgaactggtgggttcctcttcaaatagg
gctaagcagcaacttagactcttttgttagcttactgcctcattttccac
agcagattattttcagaaacctgcaggtagaaatgacttcagcttcctgc
catcagaagtccatcagtcggccatcacaggcccacctcttcctcccaag
tggatggagcttagctcccggcagtacctcccaagcttgattagctacat
atagccccttcctcacatgtccagtttgatccagtcagtcaggggtgatc
tgacagacattgacagtgaagtaggtcatgggagacactagcactatccg
agttatagatgcatctcctctgtctttttctttcagaaccacacttactt
ttatctgaagcccgctctatgaacatagtttctcccttctggtttccttt
gttcccaggggttgttttcacaatggtctagatgagggctgtgcacactg
ggtttgtcagcctcctcatctctcagtaggatccaaggggcttggcactc
ttccctctggaaatgctgctttcctggcctccccctagaatagcctgttt
tcttcttcatgtccgtctccaaactgaaaggttgcactggaaaaactgag
ccaattcttgtcagtccct
gaattctccgaggtctgcctagggctgcacatacaatacaaaaggaaagg
caagatcacgcctccctgcctgagagaggtcaaattgcatcctttcaatt
ctgggctattagccaaggaacagacagcagtaacaaagcacaaacacagc
atctctattaactgtcaaaagtacatttgttattgctacattagagaatc
taatgctctcataaaaattgactgggtcctttaaatttggccaaactctt
cacgatgattacagcagctaagtgtgttagaaacatgttaaattgcctct
ttgattgcacgctgagcattttagcagccgagtacactgtaaatactcca
gcaggaaatgttgtttctcgtgtttatttctttgggatcccctgagaaat
ataagaatcttgtttattgttgaaatgcctcttgtttaatgtcgctcaca
tctgtccctggtgtcttaccagcaaaaacagtagtgagaatgccacgaag
gagaagaaggaatctaaagacacaggaagaggaggaggaggaaacaggaa
gtgttccggggaagtgaaatgggaccacatacctgggagaagcccaaaca
ttctgatcagaggaggctgcaggcattggaaggaacagttaggggcatgg
tggacagcagacagccccggccctcatgcctgcacccggaccccacatct
ggcttgtgctctcagagagggcaccttatctacagcaccgcctctgtggt
gtgctccccttgaccctcttgcacggcttgccagcctgtaaggaacattg
gcacagatgtaacgcacatcagcacatctgtcttagggctactgactaac
ccacagatctgcattaaaggaaccatgtcagagggcacaaatagggctgt
ccacaggagcgactctcttccctggatgtttccatcacatacagggaaac
tgcttcagttttcatccgtgctgttaacagcactgtcccaggtccgagcc
tcagctgaagttacttgctctgaggctggaccatctcctagtacagcctt
ttgctctcttgtgtttgttgcttataatgttcttgtgaaattcagacata
gaacgaacatatactgattcacaaacctcacccactttgcttgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59624095_59625283
seq2: B6Ng01-128F18.b_47_1215

seq1  GAATTCAGTCTAAAACCTCTACATATGAGCTGGGTGTGGTCATGCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTAAAACCTCTACATATGAGCTGGGTGTGGTCATGCACTGC  50

seq1  TTTAATCTTAGCATTTCCTGGTGCAGGGGGGAAGGGTCAGCAGAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTAGCATTTCCTGGTGCAGGGGGGAAGGGTCAGCAGAGACAGA  100

seq1  TAAATCTCTGAGTTTGAGGTCAGCCTGGTCTATAGAATGAGTAGCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTGAGTTTGAGGTCAGCCTGGTCTATAGAATGAGTAGCCAGAG  150

seq1  CTATGTAGAGATACCCTGTCTCAAAAAACCAAACCAATACAAACTCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGAGATACCCTGTCTCAAAAAACCAAACCAATACAAACTCCTAA  200

seq1  TGTTTTTCTATATAATAAAAGTAACATAGACTAATGGTAGTTTTAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTATATAATAAAAGTAACATAGACTAATGGTAGTTTTAAGAAC  250

seq1  TACTTAGTTCTGTTATATGCAAACTTTCTCCTCCTCTATGCTGTTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTCTGTTATATGCAAACTTTCTCCTCCTCTATGCTGTTTTCTG  300

seq1  CCTAACTGTAATCTTCCCTTCTTCCTTTTTGTTTTTGAGCTCATGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGTAATCTTCCCTTCTTCCTTTTTGTTTTTGAGCTCATGGTCTG  350

seq1  TTGCTTCAGTCTTTATTTTTGCAATGTCCCAAACTTGCTGAACCCTCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGTCTTTATTTTTGCAATGTCCCAAACTTGCTGAACCCTCCGT  400

seq1  GCTTATGCTGTGACCTCTCTGTTCAAGACTTAGTTCTGGATGACACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGCTGTGACCTCTCTGTTCAAGACTTAGTTCTGGATGACACAAAC  450

seq1  TGCCTGGTTTCCCCAGAGCTGCATCAAGACTATCAAATCTTGTTAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTTTCCCCAGAGCTGCATCAAGACTATCAAATCTTGTTAGACAA  500

seq1  AAATCAAAGCAGTAATATCAGCTGAACTGGTGGGTTCCTCTTCAAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGCAGTAATATCAGCTGAACTGGTGGGTTCCTCTTCAAATAGG  550

seq1  GCTAAGCAGCAACTTAGACTCTTTTGTTAGCTTACTGCCTCATTTTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCAGCAACTTAGACTCTTTTGTTAGCTTACTGCCTCATTTTCCAC  600

seq1  AGCAGATTATTTTCAGAAACCTGCAGGTAGAAATGACTTCAGCTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTATTTTCAGAAACCTGCAGGTAGAAATGACTTCAGCTTCCTGC  650

seq1  CATCAGAAGTCCATCAGTCGGCCATCACAGGCCCACCTCTTCCTCCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGTCCATCAGTCGGCCATCACAGGCCCACCTCTTCCTCCCAAG  700

seq1  TGGATGGAGCTTAGCTCCCGGCAGTACCTCCCAAGCTTGATTAGCTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGCTTAGCTCCCGGCAGTACCTCCCAAGCTTGATTAGCTACAT  750

seq1  ATAGCCCCTTCCTCACATGTCCAGTTTGATCCAGTCAGTCAGGGGTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCTTCCTCACATGTCCAGTTTGATCCAGTCAGTCAGGGGTGATC  800

seq1  TGACAGACATTGACAGTGAAGTAGGTCATGGGAGACACTAGCACTATCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACATTGACAGTGAAGTAGGTCATGGGAGACACTAGCACTATCCG  850

seq1  AGTTATAGATGCATCTCCTCTGTCTTTTTCTTTCAGAACCACACTTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGATGCATCTCCTCTGTCTTTTTCTTTCAGAACCACACTTACTT  900

seq1  TTATCTGAAGCCCGCTCTATTGAACATAGTTTTCTCCCTTCTGGTTTCCT  950
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTATCTGAAGCCCGCTCTA-TGAACATAG-TTTCTCCCTTCTGGTTTCCT  948

seq1  TTGTTCCCCAGGGGTTGTTTTCACAATGGTCCTAGATGAGGGCTGTGCAC  1000
      ||||| |||||||||||||||||||||||| |||||||||||||||||| 
seq2  TTGTT-CCCAGGGGTTGTTTTCACAATGGT-CTAGATGAGGGCTGTGCA-  995

seq1  CACTGGGTTTGTCAGCCCTCCCTTCATCTCCTCAGTAGGATCCAAGGTGC  1050
      ||||||||||||||| |||||  |||||| ||||||||||||||||| ||
seq2  CACTGGGTTTGTCAG-CCTCC--TCATCT-CTCAGTAGGATCCAAGGGGC  1041

seq1  TTGGGCACTTCTTCCTTCTGGAAATGCCTGCTTTTCTTGGCTTCCTCTTT  1100
      || ||||| |||||| |||||||||| ||||||| || | || || ||  
seq2  TT-GGCAC-TCTTCCCTCTGGAAATG-CTGCTTTCCTGGCCTCCCCCTAG  1088

seq1  AATAGCCTCTGTTTTCTTCTTCACTGTCCGTCTCCAAACTGAAGTGTTGC  1150
      ||||||  ||||||||||||||| |||||||||||||||||||  |||||
seq2  AATAGC--CTGTTTTCTTCTTCA-TGTCCGTCTCCAAACTGAAAGGTTGC  1135

seq1  ACCTGATAAAACTGAGCCATTTTCTTTGTCCCAGTCCCT  1189
      | |||  |||||||||||| ||   ||||  ||||||||
seq2  A-CTGGAAAAACTGAGCCAATT--CTTGT--CAGTCCCT  1169

seq1: chr4_59777577_59778740
seq2: B6Ng01-128F18.g_66_1212 (reverse)

seq1  TTGTCAAAGCAAAGTGGTGTAGGTCTGTGAAATTCAGTATATGTTCTGTT  50
      ||||| |||||||||||   |||| ||||||  ||||||||||||| |||
seq2  TTGTC-AAGCAAAGTGGGTGAGGTTTGTGAA--TCAGTATATGTTC-GTT  46

seq1  CTGTATGTCCTTGACATTTCCCACAAGAACAATTATAAGCAAACAAACAC  100
      |  ||||||  ||| ||||  ||||||||| ||||||||| |||||||||
seq2  C--TATGTC--TGA-ATTT--CACAAGAAC-ATTATAAGC-AACAAACAC  87

seq1  AGAAGAGCAAAAGGCTGTACTA-GAGATGGTCCAGCCTCAGAGGCAAGTA  149
      |  ||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AAGAGAGCAAAAGGCTGTACTAGGAGATGGTCCAGCCTCAGA-GCAAGTA  136

seq1  ACTTCAGCTGAGGCCTCGGACCTGGGAACAGTGCTGTTAACAGCACGGAT  199
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  ACTTCAGCTGAGG-CTCGGACCTGGG-ACAGTGCTGTTAACAGCACGGAT  184

seq1  GAAAACTGAAGCAGTTTTCCCTGTATTGTGATGGAAACATCCAGGGAAGA  249
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GAAAACTGAAGCAG-TTTCCCTGTA-TGTGATGGAAACATCCAGGGAAGA  232

seq1  GAGTCGCTCCTGTGGACAGCCCTATTTGTGCCCTCTGACATGGTTCCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGCTCCTGTGGACAGCCCTATTTGTGCCCTCTGACATGGTTCCTTT  282

seq1  AATGCAGATCTGTGGGTTAGTCAGTAGCCCTAAGACAGATGTGCTGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATCTGTGGGTTAGTCAGTAGCCCTAAGACAGATGTGCTGATGT  332

seq1  GCGTTACATCTGTGCCAATGTTCCTTACAGGCTGGCAAGCCGTGCAAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTACATCTGTGCCAATGTTCCTTACAGGCTGGCAAGCCGTGCAAGAG  382

seq1  GGTCAAGGGGAGCACACCACAGAGGCGGTGCTGTAGATAAGGTGCCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGGGAGCACACCACAGAGGCGGTGCTGTAGATAAGGTGCCCTCT  432

seq1  CTGAGAGCACAAGCCAGATGTGGGGTCCGGGTGCAGGCATGAGGGCCGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCACAAGCCAGATGTGGGGTCCGGGTGCAGGCATGAGGGCCGGG  482

seq1  GCTGTCTGCTGTCCACCATGCCCCTAACTGTTCCTTCCAATGCCTGCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCTGTCCACCATGCCCCTAACTGTTCCTTCCAATGCCTGCAGC  532

seq1  CTCCTCTGATCAGAATGTTTGGGCTTCTCCCAGGTATGTGGTCCCATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGATCAGAATGTTTGGGCTTCTCCCAGGTATGTGGTCCCATTTC  582

seq1  ACTTCCCCGGAACACTTCCTGTTTCCTCCTCCTCCTCTTCCTGTGTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCGGAACACTTCCTGTTTCCTCCTCCTCCTCTTCCTGTGTCTTT  632

seq1  AGATTCCTTCTTCTCCTTCGTGGCATTCTCACTACTGTTTTTGCTGGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTCTTCTCCTTCGTGGCATTCTCACTACTGTTTTTGCTGGTAA  682

seq1  GACACCAGGGACAGATGTGAGCGACATTAAACAAGAGGCATTTCAACAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGGACAGATGTGAGCGACATTAAACAAGAGGCATTTCAACAAT  732

seq1  AAACAAGATTCTTATATTTCTCAGGGGATCCCAAAGAAATAAACACGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATTCTTATATTTCTCAGGGGATCCCAAAGAAATAAACACGAGA  782

seq1  AACAACATTTCCTGCTGGAGTATTTACAGTGTACTCGGCTGCTAAAATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATTTCCTGCTGGAGTATTTACAGTGTACTCGGCTGCTAAAATGC  832

seq1  TCAGCGTGCAATCAAAGAGGCAATTTAACATGTTTCTAACACACTTAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTGCAATCAAAGAGGCAATTTAACATGTTTCTAACACACTTAGCT  882

seq1  GCTGTAATCATCGTGAAGAGTTTGGCCAAATTTAAAGGACCCAGTCAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATCATCGTGAAGAGTTTGGCCAAATTTAAAGGACCCAGTCAATT  932

seq1  TTTATGAGAGCATTAGATTCTCTAATGTAGCAATAACAAATGTACTTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAGCATTAGATTCTCTAATGTAGCAATAACAAATGTACTTTTG  982

seq1  ACAGTTAATAGAGATGCTGTGTTTGTGCTTTGTTACTGCTGTCTGTTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATAGAGATGCTGTGTTTGTGCTTTGTTACTGCTGTCTGTTCCT  1032

seq1  TGGCTAATAGCCCAGAATTGAAAGGATGCAATTTGACCTCTCTCAGGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATAGCCCAGAATTGAAAGGATGCAATTTGACCTCTCTCAGGCAG  1082

seq1  GGAGGCGTGATCTTGCCTTTCCTTTTGTATTGTATGTGCAGCCCTAGGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGTGATCTTGCCTTTCCTTTTGTATTGTATGTGCAGCCCTAGGCA  1132

seq1  GACCTCGGAGAATTC  1164
      |||||||||||||||
seq2  GACCTCGGAGAATTC  1147