BAC Information

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BAC

Clone NameB6Ng01-128L17
Chromosome4 (Build37)
Map Location 25,229,938 - 25,274,045
singlet/doubletdoublet
Overlap genePrdx6-rs2
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik
Downstream geneLOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1, Manea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L17.bB6Ng01-128L17.g
ACCDH930504DH930505
length1,1441,055
definitionDH930504|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L17, 5' end.DH930505|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,229,938 - 25,231,106)(25,272,977 - 25,274,045)
sequence
gaattcagttgattccatagggtcagcaaatgcacagcatcgaagctaag
gtctactggcagaccactaataaattatgacatttgtgttactacaccag
gaaacagctttggaacccttctaaaacaatgtcccagctagccactgaca
gtgtatcaaaactgatgcttgctaggaaatatatttgccattgcagagca
aggccatgcctctgataaatagtatcaattttaaagtaacctttgagtga
tgacatcaacaatatgaggggcactgatggagatcagcagtctctccgaa
tgagagatggttgccagaaagtcactatggagatgtcacagcttattatc
agcagctagaaattagcaggggtttggcttgaaggtagacagagaatgga
agttaaaaaatgaatacacattttttgggtgtgttcctagatccataaat
cgcctgtctggacacttttacttagactcctatcagtagaaactgagtga
atttttgtatggaccagtgttgtgcctaatgatgacatcataggtatctt
ataatcagtgatccaaaggaagaagccacttccttgatctcatggtgctt
atttttggtcttaagtaacttgtaatgttaaacattcaagaagctagaca
cttccagaggcaaggatagagaaaaaaataatgcatatatgcctactcat
cagcatatccctcttcactcatatgcagtccagaactcaagcactgggaa
tcaatttatccacagagttctgggtcttcccacattaagtaacataatca
agacagtccaccacatgcctatgctcttaggccttcctgactttgaaatt
ttaaattgaagctctcttacccgatggtcctgggttgtgtcaaattgcca
aataaaactaactaccacaaatgtaatgttagtttacacaactttctatt
gattaaagtgcatcatttgtgtttctcaaatattttaaatatgtggctta
agaaagctggcactgcttcattatttatggcaccatatattgacatgtct
tgttgtcatgtatcctcatgaggaatcgagtgcaaggagaatgacttagt
atggtagggacagttaacgatcttctttgagatcataaggacca
gaattcacttattcaaagaataaatgtaaattgcatacagattaatagaa
ttctgaggctggacctcagagatcaattatagcaagacctaaattttctg
atgaggccactgaaatccggcaaagctgtaatataataatttcctgaatc
ccaaaacactgaggccagcagtaagggggaaatttgaatgaaagttttgg
gatgaagttaatgactggtaagtttatacatgggtaaattagtttaattg
aactcataaccttgcaaatgtcttaggaaaaggaaggattgacatgtata
aactgagatactttgcattattaagaaagttgagaattgtgtgggactgg
gattgatactggagcagtcaatagactttagaagagggctctgaagatgt
gtactttctgtttcaccagccccgcacaatggtcctccacaagataatgg
acctcttctgagattctccaggccacatggtgtaagatacagagggaaaa
gtgtggtccccaatactagaaactttgatgcaccactctgctgattcctc
agtgcagatctcctggggactctattatcagtatcagagggtttccatga
aatgcttggtcctgtccggtacttaggagccaaatgcaaacacaagttcc
tgcagtcattccactgctgcagcaccttccttccaggattgccgtaggtc
ccatataacagacatgaagatgatgcacactgagaagcattgggaagcaa
gaaaattctaataaagatgatgaaaacgacctcagaagaatcagataaca
gcaaagcgacagtctcttctcacccctgtgaacaatgagctgatacatta
aaggactgctttggtaaagcttatgaaacaaagtctgggatgaaagatta
aaaatgaaggttgtagaatctgtctctaattaacagtggaaagagcagtt
tctatcaacacactcggcagcagattctgttagtggctctcaatgactga
tgaaagcatttttaaaaaatgatcacacttctgctagattacaggatctt
atcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25229938_25231106
seq2: B6Ng01-128L17.b_49_1192

seq1  GAATTCAGTTGATTCCATAGGGTCAGCAAATGCACAGCATCGAAGCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATTCCATAGGGTCAGCAAATGCACAGCATCGAAGCTAAG  50

seq1  GTCTACTGGCAGACCACTAATAAATTATGACATTTGTGTTACTACACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTGGCAGACCACTAATAAATTATGACATTTGTGTTACTACACCAG  100

seq1  GAAACAGCTTTGGAACCCTTCTAAAACAATGTCCCAGCTAGCCACTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTTTGGAACCCTTCTAAAACAATGTCCCAGCTAGCCACTGACA  150

seq1  GTGTATCAAAACTGATGCTTGCTAGGAAATATATTTGCCATTGCAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCAAAACTGATGCTTGCTAGGAAATATATTTGCCATTGCAGAGCA  200

seq1  AGGCCATGCCTCTGATAAATAGTATCAATTTTAAAGTAACCTTTGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGCCTCTGATAAATAGTATCAATTTTAAAGTAACCTTTGAGTGA  250

seq1  TGACATCAACAATATGAGGGGCACTGATGGAGATCAGCAGTCTCTCCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAACAATATGAGGGGCACTGATGGAGATCAGCAGTCTCTCCGAA  300

seq1  TGAGAGATGGTTGCCAGAAAGTCACTATGGAGATGTCACAGCTTATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGGTTGCCAGAAAGTCACTATGGAGATGTCACAGCTTATTATC  350

seq1  AGCAGCTAGAAATTAGCAGGGGTTTGGCTTGAAGGTAGACAGAGAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAGAAATTAGCAGGGGTTTGGCTTGAAGGTAGACAGAGAATGGA  400

seq1  AGTTAAAAAATGAATACACATTTTTTGGGTGTGTTCCTAGATCCATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAATGAATACACATTTTTTGGGTGTGTTCCTAGATCCATAAAT  450

seq1  CGCCTGTCTGGACACTTTTACTTAGACTCCTATCAGTAGAAACTGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTCTGGACACTTTTACTTAGACTCCTATCAGTAGAAACTGAGTGA  500

seq1  ATTTTTGTATGGACCAGTGTTGTGCCTAATGATGACATCATAGGTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTATGGACCAGTGTTGTGCCTAATGATGACATCATAGGTATCTT  550

seq1  ATAATCAGTGATCCAAAGGAAGAAGCCACTTCCTTGATCTCATGGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGTGATCCAAAGGAAGAAGCCACTTCCTTGATCTCATGGTGCTT  600

seq1  ATTTTTGGTCTTAAGTAACTTGTAATGTTAAACATTCAAGAAGCTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGTCTTAAGTAACTTGTAATGTTAAACATTCAAGAAGCTAGACA  650

seq1  CTTCCAGAGGCAAGGATAGAGAAAAAAATAATGCATATATGCCTACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGGCAAGGATAGAGAAAAAAATAATGCATATATGCCTACTCAT  700

seq1  CAGCATATCCCTCTTCACTCATATGCAGTCCAGAACTCAAGCACTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATCCCTCTTCACTCATATGCAGTCCAGAACTCAAGCACTGGGAA  750

seq1  TCAATTTATCCACAGAGTTCTGGGTCTTCCCACATTAAGTAACATAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTATCCACAGAGTTCTGGGTCTTCCCACATTAAGTAACATAATCA  800

seq1  AGACAGTCCACCACATGCCTATGCTCTTAGGCCTTCCTGACTTTGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACAGTCCACCACATGCCTATGCTCTTAGGCCTTCCTGACTTTG-AAAT  849

seq1  TTTAAATTGAAGCTCTCTTACCCGATGGTCCTGGGTTGTGTCAAATTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAAGCTCTCTTACCCGATGGTCCTGGGTTGTGTCAAATTGCC  899

seq1  AAATAAAACTAACTACCACAAATGTAATGTTAGTTTACAACAAACTTTCT  950
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  AAATAAAACTAACTACCACAAATGTAATGTTAGTTTACA--CAACTTTCT  947

seq1  ATTGATTAAAAGTGCCATCATTTTGTGTTTTCTCAAATATTTTAAATATG  1000
      ||||||| |||||| ||||| |||||| ||||||||||||||||||||||
seq2  ATTGATT-AAAGTG-CATCA-TTTGTG-TTTCTCAAATATTTTAAATATG  993

seq1  TGGCTTAAGAAAAGCCTGGCAACTGCTTCATTTAATTTATGGCACCATAT  1050
      ||||||||||||   ||||| |||||||||||  ||||||||||||||||
seq2  TGGCTTAAGAAA--GCTGGC-ACTGCTTCATT--ATTTATGGCACCATAT  1038

seq1  A-TGACAATGTCTTGTTTGTCATGTATCCTCATGAGGAAATCAGAGTGCA  1099
      | |||| |||||||| ||||||||||||||||||||| |||| |||||| 
seq2  ATTGAC-ATGTCTTG-TTGTCATGTATCCTCATGAGG-AATC-GAGTGC-  1083

seq1  AAGGAGAAATGACTTAGTATGGTTAGGGAAACAGTTTTAACCAGATCTTC  1149
      |||||| ||||||||||||||| |||||  ||||  |||||  |||||| 
seq2  AAGGAG-AATGACTTAGTATGG-TAGGG--ACAG--TTAAC--GATCTT-  1124

seq1  CTTTGAGATCATAAAGACCA  1169
      |||||||||||||| |||||
seq2  CTTTGAGATCATAAGGACCA  1144

seq1: chr4_25272977_25274045
seq2: B6Ng01-128L17.g_67_1121 (reverse)

seq1  CTGATAAGATTCTGTAATCTAAGCAGAAGTTGTGATTCATTTTTTTAAAA  50
      |||||||||| ||||||||| |||||||| ||||| |||||||||   ||
seq2  CTGATAAGATCCTGTAATCT-AGCAGAAG-TGTGA-TCATTTTTT---AA  44

seq1  AAATGCTTTCATCAGTCATTTGAAGAGCCACTAAACAGAATCTTGCTTGC  100
      ||||||||||||||||||||   ||||||||| ||||||||| ||| |||
seq2  AAATGCTTTCATCAGTCATT--GAGAGCCACT-AACAGAATC-TGC-TGC  89

seq1  CGAGTGTGTTGATAAGAAACTGCTCTTTTCCACTGTTAATTAGAGACAGA  150
      ||||||||||||| ||||||||||| ||||||||||||||||||||||| 
seq2  CGAGTGTGTTGAT-AGAAACTGCTC-TTTCCACTGTTAATTAGAGACAG-  136

seq1  ATTCTACAACCTTCATTTTTAATCTTTCATCCCAGACTTTGTTTCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAACCTTCATTTTTAATCTTTCATCCCAGACTTTGTTTCATAAG  186

seq1  CTTTACCAAAGCAGTTCTTTAATGTATCAGCTCATTGTTCACAGGGGTGA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTACCAAAGCAGTCCTTTAATGTATCAGCTCATTGTTCACAGGGGTGA  236

seq1  GAAGAGACTGTCGCTTTGCTGTTATCTGATTCTTCTGAGGTCGTTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTGTCGCTTTGCTGTTATCTGATTCTTCTGAGGTCGTTTTCAT  286

seq1  CATCTTTATTAGAATTTTCTTGCTTCCCAATGCTTCTCAGTGTGCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATTAGAATTTTCTTGCTTCCCAATGCTTCTCAGTGTGCATCAT  336

seq1  CTTCATGTCTGTTATATGGGACCTACGGCAATCCTGGAAGGAAGGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTCTGTTATATGGGACCTACGGCAATCCTGGAAGGAAGGTGCTG  386

seq1  CAGCAGTGGAATGACTGCAGGAACTTGTGTTTGCATTTGGCTCCTAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGAATGACTGCAGGAACTTGTGTTTGCATTTGGCTCCTAAGTA  436

seq1  CCGGACAGGACCAAGCATTTCATGGAAACCCTCTGATACTGATAATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACAGGACCAAGCATTTCATGGAAACCCTCTGATACTGATAATAGAG  486

seq1  TCCCCAGGAGATCTGCACTGAGGAATCAGCAGAGTGGTGCATCAAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGAGATCTGCACTGAGGAATCAGCAGAGTGGTGCATCAAAGTTT  536

seq1  CTAGTATTGGGGACCACACTTTTCCCTCTGTATCTTACACCATGTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTGGGGACCACACTTTTCCCTCTGTATCTTACACCATGTGGCCT  586

seq1  GGAGAATCTCAGAAGAGGTCCATTATCTTGTGGAGGACCATTGTGCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCTCAGAAGAGGTCCATTATCTTGTGGAGGACCATTGTGCGGGG  636

seq1  CTGGTGAAACAGAAAGTACACATCTTCAGAGCCCTCTTCTAAAGTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAACAGAAAGTACACATCTTCAGAGCCCTCTTCTAAAGTCTATT  686

seq1  GACTGCTCCAGTATCAATCCCAGTCCCACACAATTCTCAACTTTCTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCCAGTATCAATCCCAGTCCCACACAATTCTCAACTTTCTTAAT  736

seq1  AATGCAAAGTATCTCAGTTTATACATGTCAATCCTTCCTTTTCCTAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGTATCTCAGTTTATACATGTCAATCCTTCCTTTTCCTAAGAC  786

seq1  ATTTGCAAGGTTATGAGTTCAATTAAACTAATTTACCCATGTATAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAGGTTATGAGTTCAATTAAACTAATTTACCCATGTATAAACTT  836

seq1  ACCAGTCATTAACTTCATCCCAAAACTTTCATTCAAATTTCCCCCTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCATTAACTTCATCCCAAAACTTTCATTCAAATTTCCCCCTTACT  886

seq1  GCTGGCCTCAGTGTTTTGGGATTCAGGAAATTATTATATTACAGCTTTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAGTGTTTTGGGATTCAGGAAATTATTATATTACAGCTTTGC  936

seq1  CGGATTTCAGTGGCCTCATCAGAAAATTTAGGTCTTGCTATAATTGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCAGTGGCCTCATCAGAAAATTTAGGTCTTGCTATAATTGATCT  986

seq1  CTGAGGTCCAGCCTCAGAATTCTATTAATCTGTATGCAATTTACATTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCAGCCTCAGAATTCTATTAATCTGTATGCAATTTACATTTAT  1036

seq1  TCTTTGAATAAGTGAATTC  1069
      |||||||||||||||||||
seq2  TCTTTGAATAAGTGAATTC  1055