BAC Information

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BAC

Clone NameB6Ng01-128N24
Chromosome4 (Build37)
Map Location 129,314,116 - 129,420,499
singlet/doubletdoublet
Overlap geneTxlna, Kpna6, Tmem39b, Khdrbs1
Upstream genePhc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b
Downstream geneLOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128N24.bB6Ng01-128N24.g
ACCDH930611DH930612
length936369
definitionDH930611|Mus musculus domesticus DNA, BAC clone: B6Ng01-128N24, 5' end.DH930612|Mus musculus domesticus DNA, BAC clone: B6Ng01-128N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,314,116 - 129,315,052)(129,420,125 - 129,420,499)
sequence
gaattctaccacctgaaatcattgggaaatttactaataaagtttctctt
cttactgactggaaactaatttctcatttaacagatagcagtgggagaat
taaaagaaaaagttaacagaaattaagccaatatgtgttcctgcacccta
gctcctaccccaggtagcctgatgactttccaaagggagggagggtatga
aaggaggaaagggcatggactgaccagctcagcatacttcttgcacagtg
cagccagcttctcctctggggtactcagcgtgttcagtgtctgcatcagc
agagtgatctccttccctgaaaagcacagggggtaaagcacacacccttc
ccgagggttccctctaggcccaagcctacacttcggagtgctaaggcagt
tttcctgtgacactatggtacttcataaagaactgtggctcaatcctgca
gcttcaatgcacattcccactgcaacctaagtggtatctgcagtgttact
actaacaaatgttcattaaatgaacagagcagtctctttggtaagcactg
ccagggagaggagaacctgtctgaagacattacaaacaggagaaaggtaa
gcctactgataaacccagggctactgtctgatgtcccttgagaaattagc
caaactcctgtcatgagacatagctacacagttatgtttaaagatttatt
cagccgggcaatggtggtgcacgcctttaatcccagcacttgggagacag
aggcaggcagatttctgagttcaaggccagcatagtctacagagagagtt
ccaggaaagccatggctacacagagataccctgtcttgaaaaaccaaaat
agggctggtgagatggctcagtgtgtaagagtacccgactgctcttccaa
aggtcccggagttcaaatcccagcaaccacatgggt
aggactggattttttggcgcctttttgtgttctgaggctttctgagtagg
cggggttggaaggagagagagagagaaaatttggaatttaccggggatga
gtgggtggggaacaagccaacaagccggggactccaaaaacaggtgataa
gcagcattaccagttgacccgaccccaaatgcatcttttaataattctct
cactagttttgaacctgctctaatggaaatcttgccgactgacttcctgg
atgccctacttgggtatggagggagcccttttcttccggtctttgcgtct
ctgactgaccccttcgactccttctgagtttcagttctgcaacacacagc
attccccattcctggcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129314116_129315052
seq2: B6Ng01-128N24.b_48_983

seq1  GAATTCTACCACCTGAAATCATTGGGAAATTTACTAATAAAGTTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCACCTGAAATCATTGGGAAATTTACTAATAAAGTTTCTCTT  50

seq1  CTTACTGACTGGAAACTAATTTCTCATTTAACAGATAGCAGTGGGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGACTGGAAACTAATTTCTCATTTAACAGATAGCAGTGGGAGAAT  100

seq1  TAAAAGAAAAAGTTAACAGAAATTAAGCCAATATGTGTTCCTGCACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAGTTAACAGAAATTAAGCCAATATGTGTTCCTGCACCCTA  150

seq1  GCTCCTACCCCAGGTAGCCTGATGACTTTCCAAAGGGAGGGAGGGTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTACCCCAGGTAGCCTGATGACTTTCCAAAGGGAGGGAGGGTATGA  200

seq1  AAGGAGGAAAGGGCATGGACTGACCAGCTCAGCATACTTCTTGCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAAGGGCATGGACTGACCAGCTCAGCATACTTCTTGCACAGTG  250

seq1  CAGCCAGCTTCTCCTCTGGGGTACTCAGCGTGTTCAGTGTCTGCATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTTCTCCTCTGGGGTACTCAGCGTGTTCAGTGTCTGCATCAGC  300

seq1  AGAGTGATCTCCTTCCCTGAAAAGCACAGGGGGTAAAGCACACACCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATCTCCTTCCCTGAAAAGCACAGGGGGTAAAGCACACACCCTTC  350

seq1  CCGAGGGTTCCCTCTAGGCCCAAGCCTACACTTCGGAGTGCTAAGGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGTTCCCTCTAGGCCCAAGCCTACACTTCGGAGTGCTAAGGCAGT  400

seq1  TTTCCTGTGACACTATGGTACTTCATAAAGAACTGTGGCTCAATCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTGACACTATGGTACTTCATAAAGAACTGTGGCTCAATCCTGCA  450

seq1  GCTTCAATGCACATTCCCACTGCAACCTAAGTGGTATCTGCAGTGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGCACATTCCCACTGCAACCTAAGTGGTATCTGCAGTGTTACT  500

seq1  ACTAACAAATGTTCATTAAATGAACAGAGCAGTCTCTTTGGTAAGCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAATGTTCATTAAATGAACAGAGCAGTCTCTTTGGTAAGCACTG  550

seq1  CCAGGGAGAGGAGAACCTGTCTGAAGACATTACAAACAGGAGAAAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGAGGAGAACCTGTCTGAAGACATTACAAACAGGAGAAAGGTAA  600

seq1  GCCTACTGATAAACCCAGGGCTACTGTCTGATGTCCCTTGAGAAATTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGATAAACCCAGGGCTACTGTCTGATGTCCCTTGAGAAATTAGC  650

seq1  CAAACTCCTGTCATGAGACATAGCTACACAGTTATGTTTAAAGATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCTGTCATGAGACATAGCTACACAGTTATGTTTAAAGATTTATT  700

seq1  CAGCCGGGCAATGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGCAATGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGACAG  750

seq1  AGGCAGGCAGATTTCTGAGTTCAAGGCCAGCATAGTCTACAGAGAGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGATTTCTGAGTTCAAGGCCAGCATAGTCTACAGAGAGAGTT  800

seq1  CCAGGAAAGCCATGGCTACACAGAGATACCCTGTCTTGAAAAACCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAGGAAAGCCATGGCTACACAGAGATACCCTGTCTTGAAAAACC-AAAA  849

seq1  TAGGGGCTGGTGAGATGGCTCAGTGTGTAAGAGTACCCGACTGCTCTTCC  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-GGGCTGGTGAGATGGCTCAGTGTGTAAGAGTACCCGACTGCTCTTCC  898

seq1  AAAGGT-CCGGAGTTCAAATCCCAGCAACCACATGGGT  937
      |||||| |||||||||||||||||||||||||||||||
seq2  AAAGGTCCCGGAGTTCAAATCCCAGCAACCACATGGGT  936

seq1: chr4_129420125_129420499
seq2: B6Ng01-128N24.g_72_446 (reverse)

seq1  GAAGCCAGGAATGGGGAATGCTGTGTGTTGCAGAACTGAAACTCAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGAATGGGGAATGCTGTGTGTTGCAGAACTGAAACTCAGAAGG  50

seq1  AGTCGAAGGGGTCAGTCAGAGACGCAAAGACCGGAAGAAAAGGGCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAAGGGGTCAGTCAGAGACGCAAAGACCGGAAGAAAAGGGCTCCCT  100

seq1  CCATACCCAAGTAGGGCATCCAGGAAGTCAGTCGGCAAGATTTCCATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCAAGTAGGGCATCCAGGAAGTCAGTCGGCAAGATTTCCATTAG  150

seq1  AGCAGGTTCAAAACTAGTGAGAGAATTATTAAAAGATGCATTTGGGGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTCAAAACTAGTGAGAGAATTATTAAAAGATGCATTTGGGGTCG  200

seq1  GGTCAACTGGTAATGCTGCTTATCACCTGTTTTTGGAGTCCCCGGCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTGGTAATGCTGCTTATCACCTGTTTTTGGAGTCCCCGGCTTGT  250

seq1  TGGCTTGTTCCCCACCCACTCATCCCCGGTAAATTCCAAATTTTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTTCCCCACCCACTCATCCCCGGTAAATTCCAAATTTTCTCTCT  300

seq1  CTCTCTCCTTCCAACCCCGCCTACTCAGAAAGCCTCAGAACACAAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTTCCAACCCCGCCTACTCAGAAAGCCTCAGAACACAAAAAGG  350

seq1  CGCCAAAAAATCCAGTCCTGAATTC  375
      |||||||||||||||||||||||||
seq2  CGCCAAAAAATCCAGTCCTGAATTC  375