BAC Information

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BAC

Clone NameB6Ng01-129E17
Chromosome4 (Build37)
Map Location 78,252,143 - 78,400,053
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129E17.bB6Ng01-129E17.g
ACCDH930918DH930919
length1,1031,153
definitionDH930918|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E17, 5' end.DH930919|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,398,932 - 78,400,053)(78,252,143 - 78,253,284)
sequence
gaattcttggggaaagtaatcataatgaaagcacaacattaaatgacatt
gtgaataattgtgaacagtgttcatctcactgtgacacatatggcaagta
catagagtgaacattattttttacaggacaaaaatataaaagaacataag
tgaagtgaggaaaatattaactaatttttagcataagtttttaccttgaa
taaatattcaaacacaggtttcagtgaaacattctactaggatcaataca
aaccaaaatcatgctgtttcatgacagagaacaaaatgacaggtacttca
aatagagaaggtgactactatgtagtagagaaagctattcacctctaccc
cactccctccttgactataacaatgggaaactatttccgaaacaactagt
ttattcagaaagttcctgtttttatattacacttaattcctcttgcctca
tcacgtggttgtcttgttccaaacagaatattgggtagagccaaaaaatc
taatgtgcttgagaatagcaagaaattttcatattttcatttgctgtttt
ggtaatggagcagaaattctcagaaataacagtgaaaagaatgattaatg
tatgttatgtttttgatgatactacatcagattgtattcatgaatttatg
tcacataaagaatgaaaaatattggggtgaaatttaatagtggccttggt
tataggtcaaagatcttttatgtagcctaaactcagcagcaactacacac
acagactacttcatggtttctttgaggtgattatggaagcaagatgttca
ctaatttttacaggttttggctatgtaggaacacactggtatttacttgg
tgaattacattttgtgtggtagaagtggtagggaatagtgaggctctcag
accatggtaggctttccttagatctctgtacttaaagttgagcatgaata
tatctaggccaataatgtccatgagagtgattatgaatgtcatttcagca
tatatgtatgtgtggcataaccttatgttatattgtattattgtggagac
tgagtatgtaagctgtcatgtcataatttgcttacagtaaacatctttgg
agt
gaattccagttttggaggttgggaactgttcagccttgtagtgcgtggcc
tttctgacaatccctgactctgctacagctgcagtgcttgcccagggttc
ttgaaatgtgtcaggaagaaaatttcatagcaattctctagaaacattaa
ttttaaatgaatttttagctactctgagagaaaatagcccctgagaggga
gtgtaagcagaaccactgttttcttccctctaccaaaccccaaggctcag
cgtgcgaagccccgcccagggcgccccttgcctcttgtttccctccacca
aaccccaaggctcggtgtgcgaagccccgcccagggcgcccctcgcctct
tgttcagtatgcgaagccccgcccagggcaccccttgcctcttgttcagt
gtgcgaagccccgcccagggcaccccttgcctcttgttcagtgtgcgaag
ccccgcccagggcgtcccttgactcttgtttccctcttccagcagcgatg
ctgaatttttctgataatgttctgctcctggttaactggttaaagctggg
aacgtttctgcttatctttaaaaatctctgttctcatttccaggttcttt
gcctcagttagatgatgagcattcatgtgccctaagccttatttttgctc
agtgggtccctgtaagtagttcctttgagagtaaatgattgaaacattgt
gagttgcctaaaaagccatgcttacaaatcatccatatataccctatgtt
acaaacgcacacacacacacacacacacacacacacacacacacacacac
acacacacacatatatgagggtatgtgtacctaaatgtacacgtatataa
aacagttttgtgtacattaagtctttttgacatctactcacccctatgac
ttgcctttcctctttatttttaaggaagccttcttgtagaacagaacgca
aattgccccacaattgcaaagcttttaaaagaattcttctgcagctttct
ttcttcttaatgccaaaggaaatcttaaatatagagttctcgtgcaataa
tgggttcctttgatgagaaacttttcttgggagtccttcctccttcaccc
tggggaatgtctgttctgttgaaatactcttccttaagagaagacccctc
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78398932_78400053
seq2: B6Ng01-129E17.b_48_1150 (reverse)

seq1  ACTCCAAAGATGCTTTACTGTATAGCCATAATATGACATGACAGCCTTAC  50
      |||||||||||| ||||||||| || || | ||||||||||||| |||||
seq2  ACTCCAAAGATG-TTTACTGTA-AG-CAAATTATGACATGACAG-CTTAC  46

seq1  ATAACCTCAGTTCTTCCACAAATAATTACAATATAACATAAAGGTTATG-  99
      |||  ||||||   ||||| ||||| ||||||||||||| ||||||||| 
seq2  ATA--CTCAGT--CTCCAC-AATAA-TACAATATAACAT-AAGGTTATGC  89

seq1  CACACATACATATATGCTGAAAATGAACAATTCATAATCAACTCTCATTG  149
      ||||||||||||||||||| ||||||   |||||||||| ||||||| ||
seq2  CACACATACATATATGCTG-AAATGA--CATTCATAATC-ACTCTCA-TG  134

seq1  GACATTATTGGCCTAGATTATATTTCATGCTCAACTTTAAGTTACAGAGA  199
      ||||||||||||||||| |||| |||||||||||||||||| ||||||||
seq2  GACATTATTGGCCTAGA-TATA-TTCATGCTCAACTTTAAG-TACAGAGA  181

seq1  TCTAAGGAAAGCCTACCATGGTCTTGAGAGCCTCACTATTCCCTACCACT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTAAGGAAAGCCTACCATGGTC-TGAGAGCCTCACTATTCCCTACCACT  230

seq1  TCTACCACACAAAATGTAATTCACCAAGTAAATACCAGTGTGTTCCTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACACAAAATGTAATTCACCAAGTAAATACCAGTGTGTTCCTACA  280

seq1  TAGCCAAAACCTGTAAAAATTAGTGAACATCTTGCTTCCATAATCACCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAACCTGTAAAAATTAGTGAACATCTTGCTTCCATAATCACCTC  330

seq1  AAAGAAACCATGAAGTAGTCTGTGTGTGTAGTTGCTGCTGAGTTTAGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCATGAAGTAGTCTGTGTGTGTAGTTGCTGCTGAGTTTAGGCT  380

seq1  ACATAAAAGATCTTTGACCTATAACCAAGGCCACTATTAAATTTCACCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAGATCTTTGACCTATAACCAAGGCCACTATTAAATTTCACCCC  430

seq1  AATATTTTTCATTCTTTATGTGACATAAATTCATGAATACAATCTGATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCATTCTTTATGTGACATAAATTCATGAATACAATCTGATGT  480

seq1  AGTATCATCAAAAACATAACATACATTAATCATTCTTTTCACTGTTATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATCAAAAACATAACATACATTAATCATTCTTTTCACTGTTATTT  530

seq1  CTGAGAATTTCTGCTCCATTACCAAAACAGCAAATGAAAATATGAAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTTCTGCTCCATTACCAAAACAGCAAATGAAAATATGAAAATT  580

seq1  TCTTGCTATTCTCAAGCACATTAGATTTTTTGGCTCTACCCAATATTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTATTCTCAAGCACATTAGATTTTTTGGCTCTACCCAATATTCTG  630

seq1  TTTGGAACAAGACAACCACGTGATGAGGCAAGAGGAATTAAGTGTAATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACAAGACAACCACGTGATGAGGCAAGAGGAATTAAGTGTAATAT  680

seq1  AAAAACAGGAACTTTCTGAATAAACTAGTTGTTTCGGAAATAGTTTCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGAACTTTCTGAATAAACTAGTTGTTTCGGAAATAGTTTCCCA  730

seq1  TTGTTATAGTCAAGGAGGGAGTGGGGTAGAGGTGAATAGCTTTCTCTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAGTCAAGGAGGGAGTGGGGTAGAGGTGAATAGCTTTCTCTACT  780

seq1  ACATAGTAGTCACCTTCTCTATTTGAAGTACCTGTCATTTTGTTCTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAGTCACCTTCTCTATTTGAAGTACCTGTCATTTTGTTCTCTGT  830

seq1  CATGAAACAGCATGATTTTGGTTTGTATTGATCCTAGTAGAATGTTTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACAGCATGATTTTGGTTTGTATTGATCCTAGTAGAATGTTTCAC  880

seq1  TGAAACCTGTGTTTGAATATTTATTCAAGGTAAAAACTTATGCTAAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTGTGTTTGAATATTTATTCAAGGTAAAAACTTATGCTAAAAAT  930

seq1  TAGTTAATATTTTCCTCACTTCACTTATGTTCTTTTATATTTTTGTCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATATTTTCCTCACTTCACTTATGTTCTTTTATATTTTTGTCCTG  980

seq1  TAAAAAATAATGTTCACTCTATGTACTTGCCATATGTGTCACAGTGAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAATGTTCACTCTATGTACTTGCCATATGTGTCACAGTGAGAT  1030

seq1  GAACACTGTTCACAATTATTCACAATGTCATTTAATGTTGTGCTTTCATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGTTCACAATTATTCACAATGTCATTTAATGTTGTGCTTTCATT  1080

seq1  ATGATTACTTTCCCCAAGAATTC  1122
      |||||||||||||||||||||||
seq2  ATGATTACTTTCCCCAAGAATTC  1103

seq1: chr4_78252143_78253284
seq2: B6Ng01-129E17.g_68_1220

seq1  GAATTCCAGTTTTGGAGGTTGGGAACTGTTCAGCCTTGTAGTGCGTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTTGGAGGTTGGGAACTGTTCAGCCTTGTAGTGCGTGGCC  50

seq1  TTTCTGACAATCCCTGACTCTGCTACAGCTGCAGTGCTTGCCCAGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACAATCCCTGACTCTGCTACAGCTGCAGTGCTTGCCCAGGGTTC  100

seq1  TTGAAATGTGTCAGGAAGAAAATTTCATAGCAATTCTCTAGAAACATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTGTCAGGAAGAAAATTTCATAGCAATTCTCTAGAAACATTAA  150

seq1  TTTTAAATGAATTTTTAGCTACTCTGAGAGAAAATAGCCCCTGAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGAATTTTTAGCTACTCTGAGAGAAAATAGCCCCTGAGAGGGA  200

seq1  GTGTAAGCAGAACCACTGTTTTCTTCCCTCTACCAAACCCCAAGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGCAGAACCACTGTTTTCTTCCCTCTACCAAACCCCAAGGCTCAG  250

seq1  CGTGCGAAGCCCCGCCCAGGGCGCCCCTTGCCTCTTGTTTCCCTCCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGAAGCCCCGCCCAGGGCGCCCCTTGCCTCTTGTTTCCCTCCACCA  300

seq1  AACCCCAAGGCTCGGTGTGCGAAGCCCCGCCCAGGGCGCCCCTCGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGGCTCGGTGTGCGAAGCCCCGCCCAGGGCGCCCCTCGCCTCT  350

seq1  TGTTCAGTATGCGAAGCCCCGCCCAGGGCACCCCTTGCCTCTTGTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTATGCGAAGCCCCGCCCAGGGCACCCCTTGCCTCTTGTTCAGT  400

seq1  GTGCGAAGCCCCGCCCAGGGCACCCCTTGCCTCTTGTTCAGTGTGCGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAAGCCCCGCCCAGGGCACCCCTTGCCTCTTGTTCAGTGTGCGAAG  450

seq1  CCCCGCCCAGGGCGTCCCTTGACTCTTGTTTCCCTCTTCCAGCAGCGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCAGGGCGTCCCTTGACTCTTGTTTCCCTCTTCCAGCAGCGATG  500

seq1  CTGAATTTTTCTGATAATGTTCTGCTCCTGGTTAACTGGTTAAAGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTTCTGATAATGTTCTGCTCCTGGTTAACTGGTTAAAGCTGGG  550

seq1  AACGTTTCTGCTTATCTTTAAAAATCTCTGTTCTCATTTCCAGGTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTCTGCTTATCTTTAAAAATCTCTGTTCTCATTTCCAGGTTCTTT  600

seq1  GCCTCAGTTAGATGATGAGCATTCATGTGCCCTAAGCCTTATTTTTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTTAGATGATGAGCATTCATGTGCCCTAAGCCTTATTTTTGCTC  650

seq1  AGTGGGTCCCTGTAAGTAGTTCCTTTGAGAGTAAATGATTGAAACATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCCCTGTAAGTAGTTCCTTTGAGAGTAAATGATTGAAACATTGT  700

seq1  GAGTTGCCTAAAAAGCCATGCTTACAAATCATCCATATATA-CCTATGTT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTTGCCTAAAAAGCCATGCTTACAAATCATCCATATATACCCTATGTT  750

seq1  ACAAACGCACACACACACACACACACACACACACACACACACACACACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACGCACACACACACACACACACACACACACACACACACACACACAC  800

seq1  ACACACACACATATATGAGGGTATGTGTACCTAAATGTACACGTATATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATATATGAGGGTATGTGTACCTAAATGTACACGTATATAA  850

seq1  AACAGTTTTGTGTACATTAAGTCTTTTTGACATCTACTCACCCCTATGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTGTGTACATTAAGTCTTTTTGACATCTACTCACCCCTATGAC  900

seq1  TTGCCTTTTCCTCTTTATTTTTAAGGAAGCCTTC-TGTAGAACAGAACGC  948
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCC-TTTCCTCTTTATTTTTAAGGAAGCCTTCTTGTAGAACAGAACGC  949

seq1  AAATTGCCCCAC-ATTGCAAAGCTTTTAAAAGAATTC-TCTGCAGC-TTC  995
      |||||||||||| |||||||||||||||||||||||| |||||||| |||
seq2  AAATTGCCCCACAATTGCAAAGCTTTTAAAAGAATTCTTCTGCAGCTTTC  999

seq1  TTTCTCCTT-ATGCC-AAGGAAATCTTAAATATAGAGTTCTCGTTGCAAT  1043
      ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||
seq2  TTTCTTCTTAATGCCAAAGGAAATCTTAAATATAGAGTTCTCG-TGCAAT  1048

seq1  AAT-GGTTCCTTTGATGAG--ACTTTTCTT-GGAGTCCTTCCTCCTTCAG  1089
      ||| |||||||||||||||  ||||||||| |||||||||||||||||| 
seq2  AATGGGTTCCTTTGATGAGAAACTTTTCTTGGGAGTCCTTCCTCCTTCAC  1098

seq1  CCTGGGGACTGTCTGTTCTGTTTGAATA-TCTTTCTTTAGAGAAGA-CCC  1137
      |||||||| |||||||||||||  |||| |||| ||| |||||||| |||
seq2  CCTGGGGAATGTCTGTTCTGTTGAAATACTCTTCCTTAAGAGAAGACCCC  1148

seq1  TCACT  1142
      |||||
seq2  TCACT  1153