BAC Information

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BAC

Clone NameB6Ng01-129E18
Chromosome14 (Build37)4 (Build37)
Map Location 28,174,708 - 28,175,74046,455,750 - 46,455,984
singlet/doubletsingletsinglet
Overlap geneArhgef3
Upstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, LOC100040147
Downstream geneCcdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129E18.bB6Ng01-129E18.g
ACCDH930920DH930921
length1,033137
definitionDH930920|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E18, 5' end.DH930921|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,174,708 - 28,175,740)(46,455,750 - 46,455,984)
sequence
gaattccagattcatgaaggatttctccaagcatctgctgtgtttagaat
ggcctgcaggaaccccttgaagaatgagaaattctgagtcaaactttgaa
agcaatggctgaaaaggaaagatgaaccctttggggtaggggtcgggcga
gctgccttaggaaatgattgacgtctgctacaattggctgacttggcatt
ttccatcacaatttgaggtcttcatgtgctgtccagcatctactgcaggt
cagatggagcataggaaagcaagggtaactgtcctctttgtcttgtaaaa
tgtttgctctgtcttttccctctttcccccagcctgttttatttgtatta
ttcttgttaacatttattggattaagaagtctccctctcccctctcagcc
agctccggagtaacttacagatttgcaatcgatgttttctgtggaggtga
ctttgaaaatgtgtggctataaatagtatagaaaccaaaaacccatgata
caaatttctccctgtacatttcctcttgccattagatattttaggaattt
taatacgtgcctctctgttattataggttcaaagatgctttcttatatcc
tagaaatgaaacttctttaaaaatgtttggagctggtcagatgtcccagc
aggcttgccaccaggactgacaacctgagtctgatccctgggacccatat
ggtggaaggagaggaaccaactacagaatgttgtcctctgactctctccc
ccctatacacacagacacataaatgctttttaaaataggtttttaaattt
gatgaattaaaagcaatctttgtaactttagaaaaatgaatggataaagc
atactcaaaaatgggccctggcaaggtgacaggaaggattttttgaaaaa
atgaaaccagaaacaacaacagacacgccagtgtctggcaaggtcactgg
ctgggaactctctacagcatgggaagacggttctattagaagctttgact
gaaaagctgactgattgggggggtggggagggg
gaattcaaggccagcctggtctacaaagtgagttccaggacagccagggc
tacacagagaaaccctgtctcgaaaaaccaaaagagagagggggagagag
agagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28174708_28175740
seq2: B6Ng01-129E18.b_49_1081

seq1  GAATTCCAGATTCATGAAGGATTTCTCCAAGCATCTGCTGTGTTTAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTCATGAAGGATTTCTCCAAGCATCTGCTGTGTTTAGAAT  50

seq1  GGCCTGCAGGAACCCCTTGAAGAATGAGAAATTCTGAGTCAAACTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCAGGAACCCCTTGAAGAATGAGAAATTCTGAGTCAAACTTTGAA  100

seq1  AGCAATGGCTGAAAAGGAAAGATGAACCCTTTGGGGTAGGGGTCGGGCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGCTGAAAAGGAAAGATGAACCCTTTGGGGTAGGGGTCGGGCGA  150

seq1  GCTGCCTTAGGAAATGATTGACGTCTGCTACAATTGGCTGACTTGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTAGGAAATGATTGACGTCTGCTACAATTGGCTGACTTGGCATT  200

seq1  TTCCATCACAATTTGAGGTCTTCATGTGCTGTCCAGCATCTACTGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACAATTTGAGGTCTTCATGTGCTGTCCAGCATCTACTGCAGGT  250

seq1  CAGATGGAGCATAGGAAAGCAAGGGTAACTGTCCTCTTTGTCTTGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAGCATAGGAAAGCAAGGGTAACTGTCCTCTTTGTCTTGTAAAA  300

seq1  TGTTTGCTCTGTCTTTTCCCTCTTTCCCCCAGCCTGTTTTATTTGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTCTGTCTTTTCCCTCTTTCCCCCAGCCTGTTTTATTTGTATTA  350

seq1  TTCTTGTTAACATTTATTGGATTAAGAAGTCTCCCTCTCCCCTCTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTAACATTTATTGGATTAAGAAGTCTCCCTCTCCCCTCTCAGCC  400

seq1  AGCTCCGGAGTAACTTACAGATTTGCAATCGATGTTTTCTGTGGAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGAGTAACTTACAGATTTGCAATCGATGTTTTCTGTGGAGGTGA  450

seq1  CTTTGAAAATGTGTGGCTATAAATAGTATAGAAACCAAAAACCCATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATGTGTGGCTATAAATAGTATAGAAACCAAAAACCCATGATA  500

seq1  CAAATTTCTCCCTGTACATTTCCTCTTGCCATTAGATATTTTAGGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTCCCTGTACATTTCCTCTTGCCATTAGATATTTTAGGAATTT  550

seq1  TAATACGTGCCTCTCTGTTATTATAGGTTCAAAGATGCTTTCTTATATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACGTGCCTCTCTGTTATTATAGGTTCAAAGATGCTTTCTTATATCC  600

seq1  TAGAAATGAAACTTCTTTAAAAATGTTTGGAGCTGGTCAGATGTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGAAACTTCTTTAAAAATGTTTGGAGCTGGTCAGATGTCCCAGC  650

seq1  AGGCTTGCCACCAGGACTGACAACCTGAGTCTGATCCCTGGGACCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCCACCAGGACTGACAACCTGAGTCTGATCCCTGGGACCCATAT  700

seq1  GGTGGAAGGAGAGGAACCAACTACAGAATGTTGTCCTCTGACTCTCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGGAGAGGAACCAACTACAGAATGTTGTCCTCTGACTCTCTCCC  750

seq1  CCCTATACACACAGACACATAAATGCTTTTTAAAATAGGTTTTTAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATACACACAGACACATAAATGCTTTTTAAAATAGGTTTTTAAATTT  800

seq1  GATGAATTAAAAGCAATCTTTGTAACTTTAGAAAAATGAATGGATAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTAAAAGCAATCTTTGTAACTTTAGAAAAATGAATGGATAAAGC  850

seq1  ATACTCAAAAAT-GGCCCTGGCAAGGTGACAGGAAGGATTTTTTGAAAAA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATACTCAAAAATGGGCCCTGGCAAGGTGACAGGAAGGATTTTTTGAAAAA  900

seq1  ATGAAACCAGAAACAACAACAGACACGCCAGTGTCTGGCAAGGTCACTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCAGAAACAACAACAGACACGCCAGTGTCTGGCAAGGTCACTGG  950

seq1  CTGGGAACTCTCTACAGCAATGGGAAGAAGGGTTCTATTAGAAGCTTTGA  999
      |||||||||||||||||| |||||||| | ||||||||||||||||||||
seq2  CTGGGAACTCTCTACAGC-ATGGGAAG-ACGGTTCTATTAGAAGCTTTGA  998

seq1  CTGAAAAGCTGACTGATT-GGGGGGTGGGGAAGGG  1033
      |||||||||||||||||| |||||||||||| |||
seq2  CTGAAAAGCTGACTGATTGGGGGGGTGGGGAGGGG  1033

seq1: chr4_46455750_46455984
seq2: B6Ng01-129E18.g_69_204 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCCCAGCCCCACCCCGTGT  50
      ||||||||||||||||||||||||||||                     |
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTC---------------------T  29

seq1  CTCTCTCTCTCTCTCCTCCACTGCCCACCCCCTCTCTCCCAAGACAGGGT  100
      ||||||||||||||             |||||||||||            
seq2  CTCTCTCTCTCTCT-------------CCCCCTCTCTC------------  54

seq1  TTCTCTGTGTAGCCCTGGCTGTCCCAGAACTCCCTCTACATCTGCCACTT  150
                                                       |
seq2  -------------------------------------------------T  55

seq1  TGTGTTTATTTGAGACTGGGTTTCACTATATAGCCATGGCTAGCCTAGAA  200
      | || || || ||||| ||||||| || | ||||| |||||  ||| |||
seq2  TTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  105

seq1  CTTACAGGCTATGTAGTCCAGGCTGGCCTGGAATT  235
      || |    || ||||| |||||||||||| |||||
seq2  CTCA----CTTTGTAGACCAGGCTGGCCTTGAATT  136