BAC Information

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BAC

Clone NameB6Ng01-129G05
Chromosome4 (Build37)
Map Location 123,497,155 - 123,638,633
singlet/doubletdoublet
Overlap geneRhbdl2, LOC667064, Mycbp, Rragc
Upstream genePpt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G05.bB6Ng01-129G05.g
ACCDH930983DH930984
length839780
definitionDH930983|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G05, 5' end.DH930984|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,497,155 - 123,497,988)(123,637,856 - 123,638,633)
sequence
gaattctttctataaattcacaggagcacaataaagaccaagatgtctgc
ctccagatcagcatcccaaagctgactggtgctcagaatctcccggagag
ctcaggacacctcaagcctctcaccagacctgcatacatgtgtgctgggc
aagactgtccagctgagctgcgccagagctccctaccccccccccatctc
tctcttcctattaatttattttgtctctctgtataatttctctattttga
tttgtgatgtagagaatgacattgactgactttccagtgttaaaccaagg
ttgcttcagggaggacacttggtcatggtctattatgattttaacagatg
attagattagatttgttaaaatttttttaaagatttatttattttaatta
taagagcacactgtagctgtcttcagacacaccagaagagggcataagat
cccattacagatggctgggagctaccatgtggctgctgggaattgaactc
aggacctctggaagagtagtcagtgctcttaactgctgatccatctctcc
aacccgatttgttaaaaatttaaaagatttgtttttaattattcatatgt
gtgctggaatgcacatgagtgcagtaccagccatggtggccagaatcgtg
gttctctctcctcttcctcttccttcttttcccatttccatccttccctc
catccctcttttctctctctcctccccttcctccatccctccttctctct
ctctctctttaaatctctctctctccctccctccctccctccctcccttc
aaactcatccttccttcctttggttggagaatgagccca
gaattcaccttgctaggctgtaaaattctgcattattaacattccaaaat
tcttccattctctgtgcacatcttagatgggggtgtgctcgtgtgtgtga
atatttgagaattcaaaactgtggagaggatagaggtggcagaagtttat
taaattggcccagggcggttttgaaatttgaaagtttctcacactccatg
gctctgggccaactcccagctggctcagctgagcagcccacacagggctc
agtcaccaaggtgcggtccctctgtcctcacagagatgaaaggctagcat
ttgagggtgctaagggaggaggccttaagatttgtccagctccagctagg
tcacactgagaacagtcgagatagcctatgggagacactcaggtgactta
gtggtgaatgtgtgaaatcttgaagcattggtgatagttacacataagtc
ctcccagggtgaggtgatagctccctccagaagccagtggtggaacctat
cagatctgcctgacccacagaggagtcggaggcttacattgttgttgttg
ttgttgttgttgttgttgttgctgctgctgcagtggtggtggttgttgct
gttatattgtcattcccatttttctctgttttgatggggagaaaggagga
agcaaaaccaatatttatgaaactcttgcaaacacagacacgtgcttttt
gcctcaggaatgacacatgttctggtggccatagagccaagctctgatat
ccaaagctctgaaatcagaggacttgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123497155_123497988
seq2: B6Ng01-129G05.b_50_888

seq1  GAATTCTTTCTATAAATTCACAGGAGCACATTAAAGACCAAGATGTCTGC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCTTTCTATAAATTCACAGGAGCACAATAAAGACCAAGATGTCTGC  50

seq1  CTCCAGATCAGCATCCCAAAGCTGACTGGTGCTCAGAATCTCCCGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATCAGCATCCCAAAGCTGACTGGTGCTCAGAATCTCCCGGAGAG  100

seq1  CTCAGGACACCTCAAGCCTCTCACCAGACCTGCATACATGTGTGCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACACCTCAAGCCTCTCACCAGACCTGCATACATGTGTGCTGGGC  150

seq1  AAGACTGTCCAGCTGAGCTGCGCCAGAGCTCCCTACCCCCCCCCCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTCCAGCTGAGCTGCGCCAGAGCTCCCTACCCCCCCCCCATCTC  200

seq1  TCTCTTCCTATTAATTTATTTTGTCTCTCTGTATAATTTCTCTATTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTATTAATTTATTTTGTCTCTCTGTATAATTTCTCTATTTTGA  250

seq1  TTTGTGATGTAGAGAATGACATTGACTGACTTTCCAGTGTTAAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGTAGAGAATGACATTGACTGACTTTCCAGTGTTAAACCAAGG  300

seq1  TTGCTTCAGGGAGGACACTTGGTCATGGTCTATTATGATTTTAACAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGGGAGGACACTTGGTCATGGTCTATTATGATTTTAACAGATG  350

seq1  ATTAGATTAGATTTGTTAAAATTTTTTTAAAGATTTATTTATTTTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTAGATTTGTTAAAATTTTTTTAAAGATTTATTTATTTTAATTA  400

seq1  TAAGAGCACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATAAGAT  450

seq1  CCCATTACAGATGGCTGGGAGCTACCATGTGGCTGCTGGGAATTGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACAGATGGCTGGGAGCTACCATGTGGCTGCTGGGAATTGAACTC  500

seq1  AGGACCTCTGGAAGAGTAGTCAGTGCTCTTAACTGCTGATCCATCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTGGAAGAGTAGTCAGTGCTCTTAACTGCTGATCCATCTCTCC  550

seq1  AACCCGATTTGTTAAAAATTTAAAAGATTTGTTTTTAATTATTCATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGATTTGTTAAAAATTTAAAAGATTTGTTTTTAATTATTCATATGT  600

seq1  GTGCTGGAATGCACATGAGTGCAGTACCAGCCATGGTGGCCAGAATCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAATGCACATGAGTGCAGTACCAGCCATGGTGGCCAGAATCGTG  650

seq1  GTTCTCTCTCCTCTTCCTCTTCCTTC-TTTCCCATTTCCATCCTTCCCTC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTCTCTCTCCTCTTCCTCTTCCTTCTTTTCCCATTTCCATCCTTCCCTC  700

seq1  CATCCCTC-TTTCTCTCTCTCCTCCCCTTCCTCCATCCCTCCTTCTCTCT  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTTTTCTCTCTCTCCTCCCCTTCCTCCATCCCTCCTTCTCTCT  750

seq1  CTCTCTC-TTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCC-TC  796
      ||||||| ||   |||||||||||||||||||||||||||||||||| ||
seq2  CTCTCTCTTTAAATCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTC  800

seq1  CAACCCATCCTTCCTTCCTTT-GCTGGAGATTGAGCCCA  834
       ||| |||||||||||||||| | |||||| ||||||||
seq2  AAACTCATCCTTCCTTCCTTTGGTTGGAGAATGAGCCCA  839

seq1: chr4_123637856_123638633
seq2: B6Ng01-129G05.g_71_850 (reverse)

seq1  AGCCCAAGTCCTCTGATTTCAAAGCTTTGGATATCAGCGCTTGGCTCTAT  50
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  AGCCCAAGTCCTCTGATTTCAGAGCTTTGGATATCAGAGCTTGGCTCTAT  50

seq1  GGCCACCAGAACCTGCTGTCA-TCCTGGGGC-AAAAGCACGTGTCTGTGT  98
      |||||||||||| || ||||| ||||| ||| ||||||||||||||||||
seq2  GGCCACCAGAACATG-TGTCATTCCTGAGGCAAAAAGCACGTGTCTGTGT  99

seq1  TTGCAAGAGTTTCATAAATATTTGGTTTTGCTTCCTCCTTTCT-CCCATC  147
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TTGCAAGAGTTTCATAAATA-TTGGTTTTGCTTCCTCCTTTCTCCCCATC  148

seq1  -AAACAGAGAAAAATGGGAATGACAATATAACAGCAACAACCACCACCAC  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGAAAAATGGGAATGACAATATAACAGCAACAACCACCACCAC  198

seq1  TGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAATGTAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAATGTAAG  248

seq1  CCTCCGACTCCTCTGTGGGTCAGGCAGATCTGATAGGTTCCACCACTGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGACTCCTCTGTGGGTCAGGCAGATCTGATAGGTTCCACCACTGGC  298

seq1  TTCTGGAGGGAGCTATCACCTCACCCTGGGAGGACTTATGTGTAACTATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGGGAGCTATCACCTCACCCTGGGAGGACTTATGTGTAACTATC  348

seq1  ACCAATGCTTCAAGATTTCACACATTCACCACTAAGTCACCTGAGTGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCTTCAAGATTTCACACATTCACCACTAAGTCACCTGAGTGTCT  398

seq1  CCCATAGGCTATCTCGACTGTTCTCAGTGTGACCTAGCTGGAGCTGGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGCTATCTCGACTGTTCTCAGTGTGACCTAGCTGGAGCTGGACA  448

seq1  AATCTTAAGGCCTCCTCCCTTAGCACCCTCAAATGCTAGCCTTTCATCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAGGCCTCCTCCCTTAGCACCCTCAAATGCTAGCCTTTCATCTC  498

seq1  TGTGAGGACAGAGGGACCGCACCTTGGTGACTGAGCCCTGTGTGGGCTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGACAGAGGGACCGCACCTTGGTGACTGAGCCCTGTGTGGGCTGC  548

seq1  TCAGCTGAGCCAGCTGGGAGTTGGCCCAGAGCCATGGAGTGTGAGAAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAGCCAGCTGGGAGTTGGCCCAGAGCCATGGAGTGTGAGAAACT  598

seq1  TTCAAATTTCAAAACCGCCCTGGGCCAATTTAATAAACTTCTGCCACCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTCAAAACCGCCCTGGGCCAATTTAATAAACTTCTGCCACCTC  648

seq1  TATCCTCTCCACAGTTTTGAATTCTCAAATATTCACACACACGAGCACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTCCACAGTTTTGAATTCTCAAATATTCACACACACGAGCACAC  698

seq1  CCCCATCTAAGATGTGCACAGAGAATGGAAGAATTTTGGAATGTTAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTAAGATGTGCACAGAGAATGGAAGAATTTTGGAATGTTAATAA  748

seq1  TGCAGAATTTTACAGCCTAGCAAGGTGAATTC  778
      ||||||||||||||||||||||||||||||||
seq2  TGCAGAATTTTACAGCCTAGCAAGGTGAATTC  780