BAC Information

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BAC

Clone NameB6Ng01-129I02
Chromosome4 (Build37)
Map Location 131,024,366 - 131,124,394
singlet/doubletdoublet
Overlap geneGm831, EG664832
Upstream geneZcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
Downstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I02.bB6Ng01-129I02.g
ACCDH931068DH931069
length1,010869
definitionDH931068|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I02, 5' end.DH931069|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,123,851 - 131,124,394)(131,024,366 - 131,025,068)
sequence
gaattcttttggatatctactattttataaactaatttttagaagtatat
gttatgttaaatatatatttattttatatattcattaggtatataatata
tccattaggtatataacaaattcactaggtatataatatattcattagat
acataatatattcattagatacatgatatatttttatatgccatatatta
aatatatattaaaaaggaatttgaacacagatgtatagaagttaggcccg
ttttttcctcctagccccatgctcccagaaataagactcagcctcaaaat
atatttacaaataccttggccatatagctaggctctactctgatcagata
taacttaaaatatcccatttgttctagcctacactctgccacatggctgg
ttacctgttctcacgtcttcctgggccattctttcatgccttgctctgtc
ctagaattttttctcctcctggacattccaccacctattaactgcccaag
ccataggccataggctttttaattgaccggtgatgcatccatatgataca
cgagatattctctctacacaggtgctctgcatgggcagacaatgcctctc
tcagaaaccatgtgttattaaatgaaaatctcagtggcagatgtgtgata
cctctccatcacagctattggcccacgaagccccagaagcccccaaccaa
tagcacagggtacagccaatgctctagaactagatggtcaaaccctactg
tggaagtataagagacttcgactctaggacatagagaaattaatctagaa
ctgatctgaaaacttcgttttttgctggacagctagcaaagaactggaag
gttctctgcaggctgctggattagaaagccatcaacagtcttccccagtg
gcatgccacgacactgacctgccggtcaggattgccatggttacaatagt
ggcatgaaggttatgcaacacccactgcttttgagattagattgagactg
ctcacagggg
gaattcctgtcccaacttctgtcagcgatgagctattatgtggacgtata
agccaaatgaaccctttcttcctgaatttgcttgtgtatgtaatgtttca
tcacagtaatagtaaccctaagctaaggcacagtatcaaaggatggggta
gtaggatggattatgaggtaaaggtgtttgtcactcaaacctgagactct
gagattcatcctgggaacttgtgtaaaggtagaatgagaaaaacaactcc
ataaagttgtcctgaccttcacacacacacacacacactcaatttaaaag
gaagttcctcaggcaaaacgaatctccagtagagtcttaagattacacaa
aagaataggattcttaaaatgaaataaagataaaaatcacatgaattttc
tttgctaattttaattgcactaaagcataaatgactgcctgaagaagaag
aagaatttattatatgctttagtatgcttgaaattgagataacaaaaata
ttacacaggctaagaggtcaggatgggaaacatgccgctgttgggccatt
agactattcttgagtgacatggtattatttgagggtatactcagattaat
ttaaaatatatattgcaaacactgtggtgagcactcacagtgctcttccc
aggagaaaaagaagaaataaactgaccatgaatgtgttgttagctcagag
aagaataaaataagaaacatcagaactgacagcagccactagacagcgga
ctcaaggcgttcactcagttacctctttagtgttagcggatcaatggatt
tccagaatggatagaagccagactcaatcctatctcagcgtgaaccgact
gtatggaaggccaaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131123851_131124394
seq2: B6Ng01-129I02.b_50_593 (reverse)

seq1  ATATGGATGCATCACCGGTCAATTAAAAAGCCTATGGCCTATGGCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGCATCACCGGTCAATTAAAAAGCCTATGGCCTATGGCTTGGG  50

seq1  CAGTTAATAGGTGGTGGAATGTCCAGGAGGAGAAAAAATTCTAGGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATAGGTGGTGGAATGTCCAGGAGGAGAAAAAATTCTAGGACAGA  100

seq1  GCAAGGCATGAAAGAATGGCCCAGGAAGACGTGAGAACAGGTAACCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCATGAAAGAATGGCCCAGGAAGACGTGAGAACAGGTAACCAGCC  150

seq1  ATGTGGCAGAGTGTAGGCTAGAACAAATGGGATATTTTAAGTTATATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGAGTGTAGGCTAGAACAAATGGGATATTTTAAGTTATATCTG  200

seq1  ATCAGAGTAGAGCCTAGCTATATGGCCAAGGTATTTGTAAATATATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTAGAGCCTAGCTATATGGCCAAGGTATTTGTAAATATATTTTG  250

seq1  AGGCTGAGTCTTATTTCTGGGAGCATGGGGCTAGGAGGAAAAAACGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTCTTATTTCTGGGAGCATGGGGCTAGGAGGAAAAAACGGGCC  300

seq1  TAACTTCTATACATCTGTGTTCAAATTCCTTTTTAATATATATTTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTATACATCTGTGTTCAAATTCCTTTTTAATATATATTTAATAT  350

seq1  ATGGCATATAAAAATATATCATGTATCTAATGAATATATTATGTATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATATAAAAATATATCATGTATCTAATGAATATATTATGTATCTAA  400

seq1  TGAATATATTATATACCTAGTGAATTTGTTATATACCTAATGGATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATTATATACCTAGTGAATTTGTTATATACCTAATGGATATATT  450

seq1  ATATACCTAATGAATATATAAAATAAATATATATTTAACATAACATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTAATGAATATATAAAATAAATATATATTTAACATAACATATAC  500

seq1  TTCTAAAAATTAGTTTATAAAATAGTAGATATCCAAAAGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAATTAGTTTATAAAATAGTAGATATCCAAAAGAATTC  544

seq1: chr4_131024366_131025068
seq2: B6Ng01-129I02.g_243_934

seq1  TTTGTCACTCAAACCTGAGACTCTGAGATTCATCCTGGGAACTTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTCAAACCTGAGACTCTGAGATTCATCCTGGGAACTTGTGTAA  50

seq1  AGGTAGAATGAGAAAAACAACTCCATAAAGTTGTCCTGACCTTCACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATGAGAAAAACAACTCCATAAAGTTGTCCTGACCTTCACACAC  100

seq1  ACACACACACACTCAATTTAAAAGGAAGTTCCTCAGGCAAAACGAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTCAATTTAAAAGGAAGTTCCTCAGGCAAAACGAATCTC  150

seq1  CAGTAGAGTCTTAAGATTACACAAAAGAATAGGATTCTTAAAATGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGTCTTAAGATTACACAAAAGAATAGGATTCTTAAAATGAAATA  200

seq1  AAGATAAAAATCACATGAATTTTCTTTGCTAATTTTAATTGCACTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAATCACATGAATTTTCTTTGCTAATTTTAATTGCACTAAAGC  250

seq1  ATAAATGACTGCCTGAAGAAGAAGAAGAATTTATTATATGCTTTAGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGACTGCCTGAAGAAGAAGAAGAATTTATTATATGCTTTAGTATG  300

seq1  CTTGAAATTGAGATAACAAAAATATTACACAGGCTAAGAGGTCAGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTGAGATAACAAAAATATTACACAGGCTAAGAGGTCAGGATGG  350

seq1  GAAACATGCCGCTGTTGGGCCATTAGACTATTCTTGAGTGACATGGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCCGCTGTTGGGCCATTAGACTATTCTTGAGTGACATGGTATT  400

seq1  ATTTGAGGGTATACTCAGATTAATTT-AAATATATATTGCAAACACTGTG  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTGAGGGTATACTCAGATTAATTTAAAATATATATTGCAAACACTGTG  450

seq1  GTGAGCACTCACAGTGCTCTT-CCAAGAGAAAAAGAAGAAATAAAACTGA  498
      ||||||||||||||||||||| ||| |||||||||||||||| |||||| 
seq2  GTGAGCACTCACAGTGCTCTTCCCAGGAGAAAAAGAAGAAAT-AAACTG-  498

seq1  ACCATGAATGTGTTGTTAGCTCAAGAGAAAGAATAAAAATAAAGAAACAA  548
      |||||||||||||||||||||| |||| ||||||||||   |||||||| 
seq2  ACCATGAATGTGTTGTTAGCTC-AGAG-AAGAATAAAA--TAAGAAACAT  544

seq1  CAAGAACTGAACAGCAGCCACTAAGACAGCGGACATCAAGGCGTTCAGCT  598
      | ||||||| |||||||||||| ||||||||||| |||||||||||| ||
seq2  C-AGAACTG-ACAGCAGCCACT-AGACAGCGGAC-TCAAGGCGTTCA-CT  589

seq1  CAGTTACCTCTTTAAGTGTTAGCGGACCAATGGATTTTCCAGAATGAATA  648
      ||||||||||||| |||||||||||| ||||||| ||||||||||| |||
seq2  CAGTTACCTCTTT-AGTGTTAGCGGATCAATGGA-TTTCCAGAATGGATA  637

seq1  GAAAGCAAGACCCAA-CCTATCTCAGCTGTAACAGACTGTATGGAAGGCC  697
      | |||| |||| ||| |||||||||||   ||| ||||||||||||||||
seq2  G-AAGCCAGACTCAATCCTATCTCAGCGTGAACCGACTGTATGGAAGGCC  686

seq1  AAATGG  703
      ||||||
seq2  AAATGG  692