BAC Information

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BAC

Clone NameB6Ng01-130A01
Chromosome4 (Build37)
Map Location 67,160,247 - 67,263,428
singlet/doubletdoublet
Overlap geneHmgb1-rs18
Upstream geneLOC667499, Tlr4, LOC100039379
Downstream geneLOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130A01.bB6Ng01-130A01.g
ACCDH931431DH931432
length7921,005
definitionDH931431|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A01, 5' end.DH931432|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,262,637 - 67,263,428)(67,160,247 - 67,160,822)
sequence
gaattcagcagaacaaagaccccagaagtgggtgtttttcagcataagtg
gatatgctgtgatgttcaggagggaagaaattctggggttgattttggta
agaataaaacagtgtctaaaagtaaatcaaataaaccaaggtttattcca
caaaaggggaaaaaatagaaaggcaatgtaatcaaatagctgtggctgga
tgtgttctccatactttacactggaatgcaatgttcatgaccaactagct
atattaagcttagcttggctttaggtgagaagcagaagcctggtcccagc
agacactgggcttcttaccccttcaaattagaactgtgattgtcaacagc
tgtgatggaaatgacggagtggtaatttgtcctttcgaatattatattaa
actatcacagaaatctaaggacatagtggcctagttgtgactatatacat
ctctatacaaatagatatgagtgatgatcattatattaaatggaagcata
tgtgtttttgttgtagtcagtaggggaaagaatgttggaagcagaatttg
agagttcagtcctcaacttccttagccaaaaatgaatagatttcattaga
aaaagaaagttcatgacatgttgtgtgagcatatcattttaacacaatca
agaaacaatgctgaaacttttgtgtcagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtaactgtgtatattcgtattaatattagcatgttagtatt
gtatgagtgtatttgtgaattgtgtttttttatggatgtgtc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagacagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccacaatacatctcctgggc
atatatccagaagatgtcccaactgttaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagcttcaaagaaccaagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttatacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaagcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcgcacaatatgtactcaccgataagtggatattagcccagaaac
ataggatacccaagttataagatacaatttgctaaacgcatgaaactcaa
gaagaacaaagaccaaagtgtggacactttgctccttcttagaaatggga
acaaaagacccatggaaggagttacagagacaaaatttggagctgtgacg
aaaggatggaccatctagtgattgccatatccagggatccaacccataat
cagcttccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagttgtctcttgtgagactatgcccggggcctagcaa
acacagaagtagatgctcacagtcagcattttttcaaaaatggaaaaaaa
aaaaaaaggctgtggtgcttctcttcttgtgtctttttcttgggctcttt
ccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67262637_67263428
seq2: B6Ng01-130A01.b_43_833 (reverse)

seq1  ACACATCCATAGATAAACACACATTCACAAATACACTCATACAATACTAA  50
      ||||||||||| | ||||||| ||||||||||||||||||||||||||||
seq2  ACACATCCATAAAAAAACACA-ATTCACAAATACACTCATACAATACTAA  49

seq1  CATGCTAATATTAATACGAATATACACAGTTACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAATATTAATACGAATATACACAGTTACACACACACACACACACA  99

seq1  CACACACACACACACTGACACAAAAGTTTCAGCATTGTTTCTTGATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTGACACAAAAGTTTCAGCATTGTTTCTTGATTGTG  149

seq1  TTAAAATGATATGCTCACACAACATGTCATGAACTTTCTTTTTCTAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGATATGCTCACACAACATGTCATGAACTTTCTTTTTCTAATGA  199

seq1  AATCTATTCATTTTTGGCTAAGGAAGTTGAGGACTGAACTCTCAAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTCATTTTTGGCTAAGGAAGTTGAGGACTGAACTCTCAAATTCT  249

seq1  GCTTCCAACATTCTTTCCCCTACTGACTACAACAAAAACACATATGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAACATTCTTTCCCCTACTGACTACAACAAAAACACATATGCTTC  299

seq1  CATTTAATATAATGATCATCACTCATATCTATTTGTATAGAGATGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATATAATGATCATCACTCATATCTATTTGTATAGAGATGTATAT  349

seq1  AGTCACAACTAGGCCACTATGTCCTTAGATTTCTGTGATAGTTTAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAACTAGGCCACTATGTCCTTAGATTTCTGTGATAGTTTAATATA  399

seq1  ATATTCGAAAGGACAAATTACCACTCCGTCATTTCCATCACAGCTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCGAAAGGACAAATTACCACTCCGTCATTTCCATCACAGCTGTTGA  449

seq1  CAATCACAGTTCTAATTTGAAGGGGTAAGAAGCCCAGTGTCTGCTGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACAGTTCTAATTTGAAGGGGTAAGAAGCCCAGTGTCTGCTGGGAC  499

seq1  CAGGCTTCTGCTTCTCACCTAAAGCCAAGCTAAGCTTAATATAGCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTGCTTCTCACCTAAAGCCAAGCTAAGCTTAATATAGCTAGTT  549

seq1  GGTCATGAACATTGCATTCCAGTGTAAAGTATGGAGAACACATCCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGAACATTGCATTCCAGTGTAAAGTATGGAGAACACATCCAGCCA  599

seq1  CAGCTATTTGATTACATTGCCTTTCTATTTTTTCCCCTTTTGTGGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTGATTACATTGCCTTTCTATTTTTTCCCCTTTTGTGGAATAA  649

seq1  ACCTTGGTTTATTTGATTTACTTTTAGACACTGTTTTATTCTTACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTTTATTTGATTTACTTTTAGACACTGTTTTATTCTTACCAAAA  699

seq1  TCAACCCCAGAATTTCTTCCCTCCTGAACATCACAGCATATCCACTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCAGAATTTCTTCCCTCCTGAACATCACAGCATATCCACTTATG  749

seq1  CTGAAAAACACCCACTTCTGGGGTCTTTGTTCTGCTGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACACCCACTTCTGGGGTCTTTGTTCTGCTGAATTC  791

seq1: chr4_67160247_67160822
seq2: B6Ng01-130A01.g_498_1073

seq1  ATGTGGTACATTTATACAATGGAGTACTACTCAGCTATTAAAAAGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTACATTTATACAATGGAGTACTACTCAGCTATTAAAAAGAATGA  50

seq1  ATTTATGAAATTCCTAAGCAAATGGATGGACCTGGAGGGCATCATCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAATTCCTAAGCAAATGGATGGACCTGGAGGGCATCATCCTGA  100

seq1  GTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACCGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACCGATA  150

seq1  AGTGGATATTAGCCCAGAAACATAGGATACCCAAGTTATAAGATACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATATTAGCCCAGAAACATAGGATACCCAAGTTATAAGATACAATT  200

seq1  TGCTAAACGCATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACGCATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACACTT  250

seq1  TGCTCCTTCTTAGAAATGGGAACAAAAGACCCATGGAAGGAGTTACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCTTAGAAATGGGAACAAAAGACCCATGGAAGGAGTTACAGAG  300

seq1  ACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATA  350

seq1  TCCAGGGATCCAACCCATAATCAGCTTCCAAACGCTGACACCATTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGATCCAACCCATAATCAGCTTCCAAACGCTGACACCATTGCATA  400

seq1  CACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGTTGTCTCTTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGTTGTCTCTTGTGAG  450

seq1  ACTATG-CCGGGGCCTAGCAAACACAGAAGTAGATGCTCACAGTCAGCAT  499
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCCGGGGCCTAGCAAACACAGAAGTAGATGCTCACAGTCAGCAT  500

seq1  TTTTTCAAAAAATGGAAAAAAAAAAAAAAAGGCTGT-GTGCTTCTCTTCT  548
      |||||| |||||||| |||||||||||||||||||| |||||||||||||
seq2  TTTTTC-AAAAATGG-AAAAAAAAAAAAAAGGCTGTGGTGCTTCTCTTCT  548

seq1  TGTGTC-TTTTCTTGGGCTCTTTTCCTTT  576
      |||||| ||||||||||||| ||||||||
seq2  TGTGTCTTTTTCTTGGGCTC-TTTCCTTT  576