BAC Information

Click to search

BAC

Clone NameB6Ng01-130C14
Chromosome4 (Build37)
Map Location 52,785,040 - 52,925,052
singlet/doubletdoublet
Overlap geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
Downstream geneOlfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130C14.bB6Ng01-130C14.g
ACCDH931547DH931548
length1,1481,081
definitionDH931547|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C14, 5' end.DH931548|Mus musculus domesticus DNA, BAC clone: B6Ng01-130C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,923,895 - 52,925,052)(52,785,040 - 52,786,125)
sequence
gaattcttagcagcaagatcttatccgttgtcctttcttggcggactctt
tttgcctaggggtgtgtgtggggaaagggcctgctctggatgccatggct
gtggctgtcttctcacatttcctatgtgagatgtgtgacatatattccag
accaggaatctagtagggaacagggagacacctactgtctcagatgggta
cctgggtgcgggggtctcatacccactcaaccttaccaagtctcctggtg
cagtccattgtcccactgcacaagagcaacaaaaaagtggttattttgtg
acatacatcttgtcaactttgcattatagaatataaattttgcattacta
ttatccccagagttctgctggaaggcgggcatcctcctatggagatgacc
aatgattccatgttgacagaatttctcttggtggggctttctgatcaccc
gaagctgcagacggttttatttgtgctagttttgtgcatgtatctgatga
tcctgcttggaaatggcgttcttatcgcagtagtcatccatgacatccgc
ctgcacactcccatgtattttttcctctgtaatctttccttcctggacat
ctgctacacaagctcttctgtccccctaattctcagtagcttcctgacag
taaggaagagagtgtccttctctgagtgtatgattcaaatgttcttctcc
tttgccatgggtgccacagaatgtgtacttctaggcacgatggcacttga
ccgctttatggccatctgttacccactgaggtatcctgtcatcatgagca
aggatacctatgtgcccatggcagctggatgctgggttgctgggcttgtt
gactcagtggtacagacctctcttgcagtgcattaccattctgcactaat
aatgtcattcaccacttcgtctgcgaaattctgggcattctggaactggc
ttgtgcagatatttcatcaacgtgatcagcctaacaggtcaaatctgctt
tttctagctgtccgtgctagtattgctgtctcttacatgttcatcatgca
actatttgaggattcctttctgctgaaagaaaacgaaaggccttctcact
gtcttgccacctgacagtgtaatattcttctatggaaccatctctctc
gaattctcctgaagaaattctaatctgtgggttccagattacagcgacac
taagctttttagaagatcgaatgtagaagtctcagaaactttcaaattta
tagtcttggcagtaacgtggcagtggttgttcacaggatattaattcaga
acacatcagagctagttttatactccgtggatcaacttgccaccatctct
tcaacaaagcagcagctgtttgggttttaaatattcacattcagaggctg
ggagtcatagtagacacacttatgcaagcgtaaaatcatatatatataaa
cacagattgatgggaccattgtgatgacacaaaccttcatcactaaacca
ctgccagcattttttaactctttcttagccatcttcttgtccttgcagat
gtcaggaaaatataatttaaataagtctttttcccaaaccagacttcaca
agatgaaagagagaaggaaacaagtttataattagtcaggcttttgtgat
tcacattacattcagtctactaagagtttgcaaaccccttaccacaaaac
aaaacaaaacaaaacctcttttatgtaaacaagtaataaatccattatta
taaattctcgagataaactatattcctcaggtatgctgacttgacagtgc
aatcggtcatgtgtagctcatcctggttcatcttcgctttgctttggtaa
tttgctgaccatctgttagctaattggctttgtccagaagaaatgtagct
tcctattaaatttattacacatgtagttctgaaagtgcgagcaagccact
tgacagtggtaggctgctgccctcttggagacctggagaagagggagctc
tcttctctgatgtctgtgttccaaagagatggtttgagtctttgatgtaa
aatttctgtgccagaaagctgccaattatagtcttatttagctttaaaag
tcacaggtacctcaaagaaacagagaaaaatgtgttcaactaaataagta
aacagggatctaagtggaaaggggatttcatttctgatgagaaaagctat
ttagtatgcttttctaacaaaaccacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52923895_52925052
seq2: B6Ng01-130C14.b_48_1195 (reverse)

seq1  GAGA-AGATGGTTCCATAGAAGATAATTACCACTGTCAGGTGGGCAGAGC  49
      |||| ||||||||||||||||||  |||| |||||||||||||  ||| |
seq2  GAGAGAGATGGTTCCATAGAAGAATATTA-CACTGTCAGGTGGCAAGA-C  48

seq1  AGGTGGAGAAGGCCTTCCGTTTTCCTTCAGCAG-AAGGAATCCTCAAAAT  98
      ||   ||||||||||| ||||||| |||||||| ||||||||||| ||||
seq2  AG--TGAGAAGGCCTTTCGTTTTCTTTCAGCAGAAAGGAATCCTC-AAAT  95

seq1  AGTTGCAATGATGAACATGTAAGAGACAGCAATAACTAGCAACGGAACAG  148
      |||||| |||||||||||||||||||||||||| |||||| |||| ||||
seq2  AGTTGC-ATGATGAACATGTAAGAGACAGCAAT-ACTAGC-ACGG-ACAG  141

seq1  CTAGAAAAAGCAGATTTGACCCTGTTAGGCTGATCACGTTGATTGAAATA  198
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  CTAGAAAAAGCAGATTTGA-CCTGTTAGGCTGATCACGTTGA-TGAAATA  189

seq1  TCTGCACAAGCCAGTTCCAGAATGCCCAGAATTTCGCAGACGAAGTGGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAAGCCAGTTCCAGAATGCCCAGAATTTCGCAGACGAAGTGGTG  239

seq1  AATGACATTATTAGTGCAGAATGGTAATTGCACTGCAAGAGAGGTCTGTA  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGACATTATTAGTGCAGAATGGTAA-TGCACTGCAAGAGAGGTCTGTA  288

seq1  CCACTGAGTCAACAAGCCCAGCAACCCAGCATCCAGCTGCCATGGGCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGTCAACAAGCCCAGCAACCCAGCATCCAGCTGCCATGGGCACA  338

seq1  TAGGTATCCTTGCTCATGATGACAGGATACCTCAGTGGGTAACAGATGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATCCTTGCTCATGATGACAGGATACCTCAGTGGGTAACAGATGGC  388

seq1  CATAAAGCGGTCAAGTGCCATCGTGCCTAGAAGTACACATTCTGTGGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCGGTCAAGTGCCATCGTGCCTAGAAGTACACATTCTGTGGCAC  438

seq1  CCATGGCAAAGGAGAAGAACATTTGAATCATACACTCAGAGAAGGACACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAAAGGAGAAGAACATTTGAATCATACACTCAGAGAAGGACACT  488

seq1  CTCTTCCTTACTGTCAGGAAGCTACTGAGAATTAGGGGGACAGAAGAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTACTGTCAGGAAGCTACTGAGAATTAGGGGGACAGAAGAGCT  538

seq1  TGTGTAGCAGATGTCCAGGAAGGAAAGATTACAGAGGAAAAAATACATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCAGATGTCCAGGAAGGAAAGATTACAGAGGAAAAAATACATGG  588

seq1  GAGTGTGCAGGCGGATGTCATGGATGACTACTGCGATAAGAACGCCATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCAGGCGGATGTCATGGATGACTACTGCGATAAGAACGCCATTT  638

seq1  CCAAGCAGGATCATCAGATACATGCACAAAACTAGCACAAATAAAACCGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGGATCATCAGATACATGCACAAAACTAGCACAAATAAAACCGT  688

seq1  CTGCAGCTTCGGGTGATCAGAAAGCCCCACCAAGAGAAATTCTGTCAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTCGGGTGATCAGAAAGCCCCACCAAGAGAAATTCTGTCAACA  738

seq1  TGGAATCATTGGTCATCTCCATAGGAGGATGCCCGCCTTCCAGCAGAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCATTGGTCATCTCCATAGGAGGATGCCCGCCTTCCAGCAGAACT  788

seq1  CTGGGGATAATAGTAATGCAAAATTTATATTCTATAATGCAAAGTTGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATAATAGTAATGCAAAATTTATATTCTATAATGCAAAGTTGACA  838

seq1  AGATGTATGTCACAAAATAACCACTTTTTTGTTGCTCTTGTGCAGTGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATGTCACAAAATAACCACTTTTTTGTTGCTCTTGTGCAGTGGGA  888

seq1  CAATGGACTGCACCAGGAGACTTGGTAAGGTTGAGTGGGTATGAGACCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACTGCACCAGGAGACTTGGTAAGGTTGAGTGGGTATGAGACCCC  938

seq1  CGCACCCAGGTACCCATCTGAGACAGTAGGTGTCTCCCTGTTCCCTACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCCAGGTACCCATCTGAGACAGTAGGTGTCTCCCTGTTCCCTACTA  988

seq1  GATTCCTGGTCTGGAATATATGTCACACATCTCACATAGGAAATGTGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGGTCTGGAATATATGTCACACATCTCACATAGGAAATGTGAGA  1038

seq1  AGACAGCCACAGCCATGGCATCCAGAGCAGGCCCTTTCCCCACACACACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCACAGCCATGGCATCCAGAGCAGGCCCTTTCCCCACACACACC  1088

seq1  CCTAGGCAAAAAGAGTCCGCCAAGAAAGGACAACGGATAAGATCTTGCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCAAAAAGAGTCCGCCAAGAAAGGACAACGGATAAGATCTTGCTG  1138

seq1  CTAAGAATTC  1158
      ||||||||||
seq2  CTAAGAATTC  1148

seq1: chr4_52785040_52786125
seq2: B6Ng01-130C14.g_72_1152

seq1  GAATTCTCCTGAAGAAATTCTAATCTGTGGGTTCCAGATTACAGCGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAAGAAATTCTAATCTGTGGGTTCCAGATTACAGCGACAC  50

seq1  TAAGCTTTTTAGAAGATCGAATGTAGAAGTCTCAGAAACTTTCAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTTAGAAGATCGAATGTAGAAGTCTCAGAAACTTTCAAATTTA  100

seq1  TAGTCTTGGCAGTAACGTGGCAGTGGTTGTTCACAGGATATTAATTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGGCAGTAACGTGGCAGTGGTTGTTCACAGGATATTAATTCAGA  150

seq1  ACACATCAGAGCTAGTTTTATACTCCGTGGATCAACTTGCCACCATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGAGCTAGTTTTATACTCCGTGGATCAACTTGCCACCATCTCT  200

seq1  TCAACAAAGCAGCAGCTGTTTGGGTTTTAAATATTCACATTCAGAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGCAGCAGCTGTTTGGGTTTTAAATATTCACATTCAGAGGCTG  250

seq1  GGAGTCATAGTAGACACACTTATGCAAGCGTAAAATCATATATATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATAGTAGACACACTTATGCAAGCGTAAAATCATATATATATAAA  300

seq1  CACAGATTGATGGGACCATTGTGATGACACAAACCTTCATCACTAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTGATGGGACCATTGTGATGACACAAACCTTCATCACTAAACCA  350

seq1  CTGCCAGCATTTTTTAACTCTTTCTTAGCCATCTTCTTGTCCTTGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCATTTTTTAACTCTTTCTTAGCCATCTTCTTGTCCTTGCAGAT  400

seq1  GTCAGGAAAATATAATTTAAATAAGTCTTTTTCCCAAACCAGACTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAAATATAATTTAAATAAGTCTTTTTCCCAAACCAGACTTCACA  450

seq1  AGATGAAAGAGAGAAGGAAACAAGTTTATAATTAGTCAGGCTTTTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGAGAGAAGGAAACAAGTTTATAATTAGTCAGGCTTTTGTGAT  500

seq1  TCACATTACATTCAGTCTACTAAGAGTTTGCAAACCCCTTACCACAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTACATTCAGTCTACTAAGAGTTTGCAAACCCCTTACCACAAAAC  550

seq1  AAAACAAAACAAAACCTCTTTTATGTAAACAAGTAATAAATCCATTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACCTCTTTTATGTAAACAAGTAATAAATCCATTATTA  600

seq1  TAAATTCTCGAGATAAACTATATTCCTCAGGTATGCTGACTTGACAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCGAGATAAACTATATTCCTCAGGTATGCTGACTTGACAGTGC  650

seq1  AATCGGTCATGTGTAGCTCATCCTGGTTCATCTTCGCTTTGC-TTGGTAA  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATCGGTCATGTGTAGCTCATCCTGGTTCATCTTCGCTTTGCTTTGGTAA  700

seq1  TTTGCTGACCATCTGTTAGCTAATTGGCTTTGTCCAGAAGAAATGTAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGACCATCTGTTAGCTAATTGGCTTTGTCCAGAAGAAATGTAGCT  750

seq1  TCCTATTAAATTTATTACACATGTAGTTCTGAAAGTGCGAGCAAGCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAAATTTATTACACATGTAGTTCTGAAAGTGCGAGCAAGCCACT  800

seq1  TGACAGTGGTAGGCTGCTGCCCTCTTGGAGACCTGGAGAAGAGGGAGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGGTAGGCTGCTGCCCTCTTGGAGACCTGGAGAAGAGGGAGCTC  850

seq1  TCTTCTCTGATGTCTGTGTTCCAAAGAGATGGTTTGAGTCTTTGATGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGATGTCTGTGTTCCAAAGAGATGGTTTGAGTCTTTGATGTAA  900

seq1  AATTTCTGTGCCAGAAAGCTGCCAATCAATAGTCTTATTTAGCTTTTAAA  949
      ||||||||||||||||||||||||||  ||||||||||||||| ||||||
seq2  AATTTCTGTGCCAGAAAGCTGCCAAT-TATAGTCTTATTTAGC-TTTAAA  948

seq1  AGTCACAGGTACCTCAAAGAAACAGAGAAAAATGTGTTTCCAACTAAATA  999
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AGTCACAGGTACCTCAAAGAAACAGAGAAAAATGTGTT--CAACTAAATA  996

seq1  AGGTAAACAAGGGATCTAAGTGGAAAGGGGGATTTCATTTTCTGATGAG-  1048
      | |||||| ||||||||||||||||| |||||||||| ||||||||||| 
seq2  A-GTAAAC-AGGGATCTAAGTGGAAA-GGGGATTTCA-TTTCTGATGAGA  1042

seq1  ACAGCTATTTAGTATGC-TTTCTTACAAAACCACATACA  1086
      | ||||||||||||||| ||||| |||||||||||||||
seq2  AAAGCTATTTAGTATGCTTTTCTAACAAAACCACATACA  1081