BAC Information

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BAC

Clone NameB6Ng01-130H04
Chromosome4 (Build37)7 (Build37)
Map Location 50,415,565 - 50,415,89121,065,315 - 21,065,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H04.bB6Ng01-130H04.g
ACCDH931757DH931758
length985681
definitionDH931757|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H04, 5' end.DH931758|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,415,565 - 50,415,891)(21,065,315 - 21,065,871)
sequence
gaattcatcacttttatttatttatttatttatttatattagatattttc
tttatttacatttcaaatgttattccctttcctagtttctctcctgaaaa
tcccctatcctctaccccctcctcctgctcaccaatccaccctcttctaa
ttcctggcctaagaattttcctatactggggcttaaaaccttctcagtaa
aaagggcctcgcctcccattgatgaccgactaggccatctactgctactt
atgcagctagagccatgattcccataatgcattttatttcattaatggtt
tagtcccagggagctctggggttactggttatttcatattgttgttcctc
ctatggggctgcaaacccctgcagctgaaagggtactttctctagcttct
tcaatggggggttttgtcctctatctaatggatgactgtgaacatccact
tctatatcagtcaggtactggcagagcctctcagtagacagttataccag
tctcctgtcagcaagctcttgttggcatctgcaatagtatctgcgtttgg
tggtggtttatggaatggatcctcaagtgaggcagtttctggatggtcac
tccttcagtctctgctccatactttgtctctgtaacttcttccatgggta
ttttgttcacccttctaaggattgatgtgtccacctttggtcttccttct
tcttgagtttcatgtgttttgcaaattgtatcttgggcattctgagcttc
tgggctaatattcacttatcagtgggtgcatatcacatgtgtctttttgt
gattgtgttacctcaatcatgatgatatcctccagatctatctattcctc
taaaattttcatgaattcttgtttttaatagctgcatattactccatttt
gtaaatgtaccacattttctgtatccattcctttgttgagggacacctag
tttttccagcttctggctatataataacgctgcta
gaattcataaaactcaagaagaatgaagaccaaagtgtgcatacttttcc
ccttgttagaattgggaacaaaacacccatggaaggagttgcagggacca
agtttggagctgagacaaaaggatcgtccaattagagactgacatatccg
ggaatccatcccatagtcagcctccaacactgacaccattgcatacacta
gcaagattttgctgaaaggacactgatatagatgtctcttgtgacactat
tccggggcctagcaaacacagaagagcatgctcacagtcagttactggat
gaatcacatggcccccaatggatgagctagagaaagtaatcaaggagcat
aagggatctgcaaccctataggtggaacaacaatatgaactaaccagtac
cccccggagctcgtgtctctatctgcatatgtatcagaagatatcctagt
cggccatcagtggaaagagaggcccattggtcatgcaaactttatatgcc
tcagtatagaggaaagccaggaccaagaagtgggagtgggtgggagagca
cttgggggactattgggatagcattggaaacgtaaatgaaataaatacct
aattgaaaataaaaaagaaaaattaaagaaaaagaaaatattttaaaaag
aagtgggagtcggtgggtgggggagtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50415565_50415891
seq2: B6Ng01-130H04.b_58_442 (reverse)

seq1  AGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTG  50
      |||||||||||||||||    ||||| |||||| |||| ||| ||||| |
seq2  AGCTAGAGAAAGTACCCTTTCAGCTGCAGGGGTTTGCAGCCCCATAGGAG  50

seq1  G---AACAATATGAAGTAACCAGTACCCCCAGAG----------------  81
      |   ||||||||||| ||||||||| ||||||||                
seq2  GAACAACAATATGAAATAACCAGTAACCCCAGAGCTCCCTGGGACTAAAC  100

seq1  ----------------------------TTCATGTCTCTAGCTGCATATG  103
                                   ||||| ||||||||||||| |
seq2  CATTAATGAAATAAAATGCATTATGGGAATCATGGCTCTAGCTGCATAAG  150

seq1  TAGCAGAAGATGGCCTAGTCGGCCATCATTGGAAAGAGAGGCCCCTTGGT  153
      |||||| ||||||||||||||| ||||| ||| | | |||| |||||  |
seq2  TAGCAGTAGATGGCCTAGTCGGTCATCAATGGGAGGCGAGG-CCCTTTTT  199

seq1  CTTGCAAACTTTATATGCCCTAGTACAGGGGAACGCCAGGGCCAAGAAGT  203
        ||  ||  || || |||| |||| |||  ||  |   ||||| ||| |
seq2  ACTGAGAAGGTTTTAAGCCCCAGTATAGGAAAATTCTTAGGCCAGGAATT  249

seq1  AGGAGTGGGTGGGTAGGGGAGCAGAGCAGGGTGAGGGGGGAGTGTATAGG  253
      || || |||||| | ||      |||||||  ||||||| || | |||||
seq2  AGAAGAGGGTGGATTGG-----TGAGCAGGAGGAGGGGGTAGAGGATAGG  294

seq1  GGACTTTCAGG-------------------ATAGCATTTGAAATGTAAAT  284
      ||| |||||||                   ||| ||||||||||||||||
seq2  GGATTTTCAGGAGAGAAACTAGGAAAGGGAATAACATTTGAAATGTAAAT  344

seq1  GAAGAAAATATCTAATAAATAATGGAATAAATAAATAAATAAA  327
       |||||||||||||||  ||||   ||||||||||||||||||
seq2  AAAGAAAATATCTAAT--ATAAATAAATAAATAAATAAATAAA  385

seq1: chr7_21065315_21065871
seq2: B6Ng01-130H04.g_192_748 (reverse)

seq1  CACCCACTCCCCCACCCACCGACTCCCACTTCTTTTTAAAATATTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCCCCACCCACCGACTCCCACTTCTTTTTAAAATATTTTCTT  50

seq1  TTTCTTTAATTTTTCTTTTTTATTTTCAATTAGGTATTTATTTCATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAATTTTTCTTTTTTATTTTCAATTAGGTATTTATTTCATTTAC  100

seq1  GTTTCCAATGCTATCCCAATAGTCCCCCAAGTGCTCTCCCACCCACTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAATGCTATCCCAATAGTCCCCCAAGTGCTCTCCCACCCACTCCC  150

seq1  ACTTCTTGGTCCTGGCTTTCCTCTATACTGAGGCATATAAAGTTTGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGGTCCTGGCTTTCCTCTATACTGAGGCATATAAAGTTTGCATG  200

seq1  ACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGATATCTTCTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGATATCTTCTGATA  250

seq1  CATATGCAGATAGAGACACGAGCTCCGGGGGGTACTGGTTAGTTCATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGATAGAGACACGAGCTCCGGGGGGTACTGGTTAGTTCATATT  300

seq1  GTTGTTCCACCTATAGGGTTGCAGATCCCTTATGCTCCTTGATTACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCACCTATAGGGTTGCAGATCCCTTATGCTCCTTGATTACTTTC  350

seq1  TCTAGCTCATCCATTGGGGGCCATGTGATTCATCCAGTAACTGACTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCATCCATTGGGGGCCATGTGATTCATCCAGTAACTGACTGTGA  400

seq1  GCATGCTCTTCTGTGTTTGCTAGGCCCCGGAATAGTGTCACAAGAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCTTCTGTGTTTGCTAGGCCCCGGAATAGTGTCACAAGAGACAT  450

seq1  CTATATCAGTGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGTGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTC  500

seq1  AGTGTTGGAGGCTGACTATGGGATGGATTCCCGGATATGTCAGTCTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGAGGCTGACTATGGGATGGATTCCCGGATATGTCAGTCTCTAA  550

seq1  TTGGACG  557
      |||||||
seq2  TTGGACG  557