BAC Information

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BAC

Clone NameB6Ng01-130N02
Chromosome4 (Build37)
Map Location 53,437,878 - 53,575,070
singlet/doubletdoublet
Overlap geneSlc44a1
Upstream geneSmc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197
Downstream geneFsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130N02.bB6Ng01-130N02.g
ACCDH932035DH932036
length1,1251,194
definitionDH932035|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N02, 5' end.DH932036|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,573,933 - 53,575,070)(53,437,878 - 53,439,061)
sequence
gaattcatctaggacttgtgaaagcatccaaaatttaggtgatgatgcta
tcagagacagtatcaaacaggtgagtccaattaccttcaattttcactac
tgaaggaaaacaagtatttcttttattcatatatttacttcagagtaaac
tgggtacctcatactcgcacaaaatggctcattatttcaatgtattacat
tcaatcctaagtatctttagttcagtatcatttaataatgataaagctat
atttaatttttttattttatgtatacgtatgggtaagtgcctgaatagta
catatgtgcaccatgtatatgcactggttaagtgagccagaagagggtgt
gggcccctgggactgaagtgacagaaggttgtggaggtgccatgtgagtg
ctgggaactgatacctgagtctctgccacagcaacaagtgctcacaccca
ctctccagttcctaaaagcattttaatatggtctttaaatggtctcaaaa
tttagttgaatttctaatacagaggaacctcgggggcttctcagaaaaat
atggatacaaaatgcttacaaatagtcagtacaaaatactttgaccctac
gggctacttcctgtatttcgtttaccttcaatccagcttgtgggatttag
gataatggattttaactagggttgactagggttgacagtaatagccttgt
ataagtggttgctggagagaggcagaaaggctctgagaacaaggcctttg
tctttaagatctactttgggaaagggcactttgatcagtagctagaagac
atgtttcaaagtctattcaaatccatatagcacaaaggagggggcaggca
ggatggtacagggagtgggtagaactaaagagtagtatttgaaatggttg
tttctgtaccaggaagacctacctcaatttctccagataaacttcattca
tgattcagtactacaattttaacactgtgtcactttgtgggattaacctc
gagagtatttgaaacactgtgcgacatttgagtacttacatcagcacttt
gtcatatagaattctcggcaggctcccatcattgtatttttgtatcattg
gcaaccagagacaatacattccact
gaattcagtatgtaaaccagtctggccttggactcagagatttgtctgtc
ccaacttcctgggtgctgattaaaggtatgtaccatgacatcctgataag
aagtcttttaaatactaaccttcccagggggctcgagagatggcagagtg
attaagatcactgactcttctggcagaggacctggttctagttcccaaca
cctacaaaacatctcataaccatttgtaactctagtcccaggggattcaa
aaccttcccctggcctctggagtcacttcatgaacatggtgcgtgtacac
acacacacacacacaaaaccaaaacatccatgcacacaaaataataataa
taataatagtaataataaatgtttaaaaattctacatctgattgggaaaa
agtagatctctttcaatatttcttgaatgtctaaatggcagaaattggat
gaacttaaaaaaaaagaaagcaatttacagtgcctctggctctggcaaat
ttaggacttatcagaattgatgagataagccattaatggtttaggattaa
agggactatgggaatatgtgcactggcatttatttatagcataaactaga
gatccttggaaagtatgagctcaatggccgaccggtcaaaattcaccaaa
aaattaccctttccaatacttattttcaaatttccagaagccattcatag
ttacagattttttagaaaatatatctaacaaagaccatcagcaactaact
gttggccatcataaagacaggaccattccctgctcatcttgcacccaccc
acataaaggctttataaccgctgtggtcaacagccccacacatcaatctg
tgtgcagatcctgtaatttcctttggagtaaatttctgtaagtgaggtta
taaaaaataagaaattcctaaggctcatgatatatttagcaaattgacat
tcagaaaggttgtaacattccattattcggaagaactttattttacacac
aacacaccacaaatccacaagatccagtgcattggcatttcttcattcag
gtaacataggagcacgtggaggacctcttgacggagtcactgagatttaa
ggttttatggaagtatcaaatgaaccagaggaatgccacatatgtacatt
cggttgaaagtgttgggcaagtgcctttaattccaggacttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53573933_53575070
seq2: B6Ng01-130N02.b_47_1171 (reverse)

seq1  AGTGG-ATGTATTGT-TCTTGTGTTTTGCCATTGATAC-AAAATACAATG  47
      ||||| ||||||||| ||| |    |||||| |||||| |||||||||||
seq2  AGTGGAATGTATTGTCTCTGG----TTGCCAATGATACAAAAATACAATG  46

seq1  ATGGGAGCCCTGGCCGAGAATTCTATATGGACAAAGTGCTGATGGTAAGT  97
      |||||||||   |||||||||||||||| |||||||||||||| ||||||
seq2  ATGGGAGCC--TGCCGAGAATTCTATAT-GACAAAGTGCTGAT-GTAAGT  92

seq1  ACTTCAAATGTCGGCCACAGTGTTTCCAAAATACTCTTCGAGGTTAATTC  147
      || ||||||||||  |||||||||||  |||||||| |||||||||| ||
seq2  AC-TCAAATGTCG--CACAGTGTTTC--AAATACTC-TCGAGGTTAA-TC  135

seq1  CCACAAAGTGACACAGTGTTAAAATTGTAGTACTGAATCATGAATGAAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGTGACACAGTGTTAAAATTGTAGTACTGAATCATGAATGAAGT  185

seq1  TTATCTTGGAGAAATTGAGGTAGGTCTTCCTGGTACAGAAACAACCATTT  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATC-TGGAGAAATTGAGGTAGGTCTTCCTGGTACAGAAACAACCATTT  234

seq1  CAAATACTACTCTTTAGTTCTACCCACTCCCTGTACCATCCTGCCTGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTACTCTTTAGTTCTACCCACTCCCTGTACCATCCTGCCTGCCC  284

seq1  CCTCCTTTGTGCTATATGGATTTGAATAGACTTTGAAACATGTCTTCTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTGTGCTATATGGATTTGAATAGACTTTGAAACATGTCTTCTAG  334

seq1  CTACTGATCAAAGTGCCCTTTCCCAAAGTAGATCTTAAAGACAAAGGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATCAAAGTGCCCTTTCCCAAAGTAGATCTTAAAGACAAAGGCCT  384

seq1  TGTTCTCAGAGCCTTTCTGCCTCTCTCCAGCAACCACTTATACAAGGCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGAGCCTTTCTGCCTCTCTCCAGCAACCACTTATACAAGGCTA  434

seq1  TTACTGTCAACCCTAGTCAACCCTAGTTAAAATCCATTATCCTAAATCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCAACCCTAGTCAACCCTAGTTAAAATCCATTATCCTAAATCCC  484

seq1  ACAAGCTGGATTGAAGGTAAACGAAATACAGGAAGTAGCCCGTAGGGTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGGATTGAAGGTAAACGAAATACAGGAAGTAGCCCGTAGGGTCA  534

seq1  AAGTATTTTGTACTGACTATTTGTAAGCATTTTGTATCCATATTTTTCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTGTACTGACTATTTGTAAGCATTTTGTATCCATATTTTTCTG  584

seq1  AGAAGCCCCCGAGGTTCCTCTGTATTAGAAATTCAACTAAATTTTGAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCCCGAGGTTCCTCTGTATTAGAAATTCAACTAAATTTTGAGAC  634

seq1  CATTTAAAGACCATATTAAAATGCTTTTAGGAACTGGAGAGTGGGTGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGACCATATTAAAATGCTTTTAGGAACTGGAGAGTGGGTGTGA  684

seq1  GCACTTGTTGCTGTGGCAGAGACTCAGGTATCAGTTCCCAGCACTCACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTGCTGTGGCAGAGACTCAGGTATCAGTTCCCAGCACTCACAT  734

seq1  GGCACCTCCACAACCTTCTGTCACTTCAGTCCCAGGGGCCCACACCCTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTCCACAACCTTCTGTCACTTCAGTCCCAGGGGCCCACACCCTCT  784

seq1  TCTGGCTCACTTAACCAGTGCATATACATGGTGCACATATGTACTATTCA  847
      |||||||                 ||||||||||||||||||||||||||
seq2  TCTGGCTNNNNNNNNNNNNNNNNNTACATGGTGCACATATGTACTATTCA  834

seq1  GGCACTTACCCATACGTATACATAAAATAAAAAAATTAAATATAGCTTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTACCCATACGTATACATAAAATAAAAAAATTAAATATAGCTTTA  884

seq1  TCATTATTAAATGATACTGAACTAAAGATACTTAGGATTGAATGTAATAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTAAATGATACTGAACTAAAGATACTTAGGATTGAATGTAATAC  934

seq1  ATTGAAATAATGAGCCATTTTGTGCGAGTATGAGGTACCCAGTTTACTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATAATGAGCCATTTTGTGCGAGTATGAGGTACCCAGTTTACTCT  984

seq1  GAAGTAAATATATGAATAAAAGAAATACTTGTTTTCCTTCAGTAGTGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAATATATGAATAAAAGAAATACTTGTTTTCCTTCAGTAGTGAAA  1034

seq1  ATTGAAGGTAATTGGACTCACCTGTTTGATACTGTCTCTGATAGCATCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGTAATTGGACTCACCTGTTTGATACTGTCTCTGATAGCATCAT  1084

seq1  CACCTAAATTTTGGATGCTTTCACAAGTCCTAGATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAATTTTGGATGCTTTCACAAGTCCTAGATGAATTC  1125

seq1: chr4_53437878_53439061
seq2: B6Ng01-130N02.g_68_1261

seq1  GAATTCAGTATGTAAACCAGTCTGGCCTTGGACTCAGAGATTTGTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGTAAACCAGTCTGGCCTTGGACTCAGAGATTTGTCTGTC  50

seq1  CCAACTTCCTGGGTGCTGATTAAAGGTATGTACCATGACATCCTGATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCCTGGGTGCTGATTAAAGGTATGTACCATGACATCCTGATAAG  100

seq1  AAGTCTTTTAAATACTAACCTTCCCAGGGGGCTCGAGAGATGGCAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTAAATACTAACCTTCCCAGGGGGCTCGAGAGATGGCAGAGTG  150

seq1  ATTAAGATCACTGACTCTTCTGGCAGAGGACCTGGTTCTAGTTCCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATCACTGACTCTTCTGGCAGAGGACCTGGTTCTAGTTCCCAACA  200

seq1  CCTACAAAACATCTCATAACCATTTGTAACTCTAGTCCCAGGGGATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAAACATCTCATAACCATTTGTAACTCTAGTCCCAGGGGATTCAA  250

seq1  AACCTTCCCCTGGCCTCTGGAGTCACTTCATGAACATGGTGCGTGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCCCTGGCCTCTGGAGTCACTTCATGAACATGGTGCGTGTACAC  300

seq1  ACACACACACACACAAAACCAAAACATCCATGCACACAAAATAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAAAACCAAAACATCCATGCACACAAAATAATAATAA  350

seq1  TAATAATAGTAATAATAAATGTTTAAAAATTCTACATCTGATTGGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGTAATAATAAATGTTTAAAAATTCTACATCTGATTGGGAAAA  400

seq1  AGTAGATCTCTTTCAATATTTCTTGAATGTCTAAATGGCAGAAATTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTCTTTCAATATTTCTTGAATGTCTAAATGGCAGAAATTGGAT  450

seq1  GAACTTAAAAAAAAAGAAAGCAATTTACAGTGCCTCTGGCTCTGGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAAAAAAAAGAAAGCAATTTACAGTGCCTCTGGCTCTGGCAAAT  500

seq1  TTAGGACTTATCAGAATTGATGAGATAAGCCATTAATGGTTTAGGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTTATCAGAATTGATGAGATAAGCCATTAATGGTTTAGGATTAA  550

seq1  AGGGACTATGGGAATATGTGCACTGGCATTTATTTATAGCATAAACTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTATGGGAATATGTGCACTGGCATTTATTTATAGCATAAACTAGA  600

seq1  GATCCTTGGAAAGTATGAGCTCAATGGCCGACCGGTCAAAATTCACCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTGGAAAGTATGAGCTCAATGGCCGACCGGTCAAAATTCACCAAA  650

seq1  AAATTACCCTTTCCAATACTTATTTTCAAATTTCCAGAAGCCATTCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCCTTTCCAATACTTATTTTCAAATTTCCAGAAGCCATTCATAG  700

seq1  TTACAGATTTTTTAGAAAATATATCTAACAAAGACCATCAGCAACTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTTTTTAGAAAATATATCTAACAAAGACCATCAGCAACTAACT  750

seq1  GTTGGCCATCATAAAGACAGGACCATTCCCTGCTCATCTTGCACCCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCATCATAAAGACAGGACCATTCCCTGCTCATCTTGCACCCACCC  800

seq1  ACATAAAGGCTTTATAACCGCTGTGGTCAACAGCCCCACACATCAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGGCTTTATAACCGCTGTGGTCAACAGCCCCACACATCAATCTG  850

seq1  TGTGCAGATCCTGTAATTTCCTTT-GAGTAAATTTCTGTAAGTGAGGTTA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGCAGATCCTGTAATTTCCTTTGGAGTAAATTTCTGTAAGTGAGGTTA  900

seq1  T-AAAAATAAGAAATTCCTAAGGCTCATGATATA-TTAGCAAATTGACAT  947
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAAAATAAGAAATTCCTAAGGCTCATGATATATTTAGCAAATTGACAT  950

seq1  TCAGAAAGGTTGTAACAATCCA-TATTCCGAAGAACTTTATTTAACACAC  996
      ||||||||||||||||| |||| ||||| |||||||||||||| ||||||
seq2  TCAGAAAGGTTGTAACATTCCATTATTCGGAAGAACTTTATTTTACACAC  1000

seq1  -ACACA-CACAAAT-CACAAGATCCAGTGCATTGGCATTTCTTCATTCAA  1043
       ||||| ||||||| |||||||||||||||||||||||||||||||||| 
seq2  AACACACCACAAATCCACAAGATCCAGTGCATTGGCATTTCTTCATTCAG  1050

seq1  GTACAATA-GAGCACGT-GAGGA-CTC-TGACGCAGTCACTGAGAATTTT  1089
      |||  ||| |||||||| ||||| ||| ||||| |||||||||| |||| 
seq2  GTAACATAGGAGCACGTGGAGGACCTCTTGACGGAGTCACTGAG-ATTTA  1099

seq1  AGGTTTTA--GAAGTATCCAAAATG-ACCAGA-GAATGCAACA-ATGTAG  1134
      ||||||||  ||||||||  ||||| |||||| |||||| ||| ||||| 
seq2  AGGTTTTATGGAAGTATC--AAATGAACCAGAGGAATGCCACATATGTA-  1146

seq1  CATTCGGTTTAAAAGGTGTTGTGCAAGTGCCTTTAATCCCAGCACTTGGG  1184
      ||||||||| |||  |||||| ||||||||||||||| |||| |||||||
seq2  CATTCGGTTGAAA--GTGTTGGGCAAGTGCCTTTAATTCCAGGACTTGGG  1194