BAC Information

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BAC

Clone NameB6Ng01-131A22
Chromosome4 (Build37)
Map Location 129,234,754 - 129,381,830
singlet/doubletdoublet
Overlap geneLck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1
Downstream geneKhdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A22.bB6Ng01-131A22.g
ACCDH932212DH932213
length1,2101,073
definitionDH932212|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A22, 5' end.DH932213|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,380,601 - 129,381,830)(129,234,754 - 129,235,837)
sequence
gaattctgggaacttttcggagggtacgtgaattctagggcccagagagg
tgggttggtggtggttcaggagggatggttgttgccatttcctagtccaa
agaagaaagaaatgaaattcagatctctctctctccacctcccccctctc
cctcttctgtctagtaaaaggttgagaagaggtgggtgaggtaaagggtg
gaaaagagcccacaaagtcacaaatcccagctgtacctgaaagccaagta
aggcctctcagccccctcttctcagtcatccatgggtgggagagctgcat
agggtttgagacataacctcattgccaaagaaagctcacagagcctgtga
gcgtttacctcctgctcatctgtgtgtacctaggaacctgcctgctgaac
acagcaaggagggtggcgatggacaggtgggcagggaaggttggaaggta
caaagcctgaccagatgaaagctgagaaacccccatagcttccagttcct
taattttccactttgtgtctttgcagctgtcaacagagcctggatcccag
gagcgacctgctgtatagaggctggcctgggccatagaaacccaggagag
gagtcaacagttgtgtttcaccccacctcttgatctgattttctcacaga
aagccaggcaggatctgctacttaggagtctttagtcccacatggagtcc
tcagagcttcaggggctcagtgctaaccgttcaacctactcaaggcattt
tagtaggaggggctggggcttaacgtggtgtttgatcacttcacttgcac
ttgtagaggacctgggttcactttatcttacaataaatgaatgaataaat
aaataaacaaataaatggctttaaagagttgaaaggcagcagacatcgta
gcgcacaccattaatccccgcactcagaggcagagacagatggagttcaa
agccagcctgatctacattgcaagttctaggacagccaggtctacacaac
ctgtctgaaacaccaaagaccagggactaaatcctggtggtgctcctcca
ggtcagaacactcagctcctgtgctattccggtctcttgtttctggctta
gttccatagatgttctgggacatactactatatattgccccactgttcac
cctttatggacttagcctggggcttgacttcgaggatctcgaaaagaagg
tcaccctctg
gaattctagagacacaggatgcagacaaggtggagagaagatgaagacag
tatggacacgaacaaccaagcatccccaggccgtatcatgtttcacaggc
tgctggatgaagtcaccttgcagcggggatgctggtgggagagatccctc
ataggtgaccagtgggtcccgcacttcagagccattccggatgggcagct
gcggggtaggaaatgaggctggggtcaaagaaaaaagacaggatttgacc
ctagctccctctcctctcctcttctttccgtttctccagcctggttgaac
cttgtctctgaattcaccaactatgtgtacatttgaccttaggaaggtcc
cttcctctagctgggcctcttccgtgatgtatgctagggaagataggagt
gctgctattttccagagcctttagttatggtccatttaggttttttctcc
tggatacacaacctttcaaccccatgccatcccttcaccaatcttatgtc
ctccgcccccatccctccaccaatcctatctcctggcccccatcccttca
ctaatcccatcttcctcttaccgagatcttgctgtccagtgggactatgg
gatagtggcagttttcacacacgtcaatgttctccatccagtcatcttca
gggtttgagctgcagacacagcccatgatccctgaaggaatgtagagagg
cctgaaggagctgcccctaagccactcgccccaacatcagacatcctaga
gccctgttctggaagttacaaaaagtacccgagatcgtcagctcagaggc
ccccattggccgcagacagaagcgctgaatcgtgggattcaagctcctga
ctgggttccctctgagccctcaagcaccaagttcacaggaggcccagccc
aaggctagtcccaccctccacctgggatgggcaaaccgccacaggcatct
ttgttagtctagttacccacttcctgcgccccagctctgctagctcctcc
tttgggggactacttgggagacatcacacacactttgcaagttctgggga
accgagagtttcattcatcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129380601_129381830
seq2: B6Ng01-131A22.b_49_1258 (reverse)

seq1  CAGAGGGTGACCTTCTTTTCTGGGAG-TCCTCTGGAATGTCCAAGGGCAC  49
      ||||||||||||||||||||   ||| |||||  ||| || ||||    |
seq2  CAGAGGGTGACCTTCTTTTC---GAGATCCTC--GAA-GT-CAAG---CC  40

seq1  CCAGGCTATAGGTTCCAATAAAGGTGTG-ACAGTGGGGGGCATATATAGT  98
      |||||||| ||  ||| ||||||| ||| ||||| ||||  |||||||||
seq2  CCAGGCTA-AG--TCC-ATAAAGG-GTGAACAGT-GGGGCAATATATAGT  84

seq1  AGTATGTTCCAGAACATTCTATGGGAAACTAAG-CAGAAACAAGAGACCG  147
      ||||||| |||||||| |||||||  ||||||| ||||||||||||||| 
seq2  AGTATGTCCCAGAACA-TCTATGG--AACTAAGCCAGAAACAAGAGACC-  130

seq1  GGAATAGCACAGGAGCTGAGTGTTCTGACCTGGA-GAGCCACACCAGGGA  196
      |||||||||||||||||||||||||||||||||| ||||  ||||| |||
seq2  GGAATAGCACAGGAGCTGAGTGTTCTGACCTGGAGGAGCACCACCA-GGA  179

seq1  TTTAGTCCCTGGTCTTTGGTGTTTCAAGACAGGTTTGTGTAGACCTGGCT  246
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TTTAGTCCCTGGTCTTTGGTGTTTC-AGACAGG-TTGTGTAGACCTGGCT  227

seq1  GTCCTAGAACTTGCAATGTAGATCAGGCTGGCTTTGAACTCCATCTGTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAACTTGCAATGTAGATCAGGCTGGCTTTGAACTCCATCTGTCT  277

seq1  CTGCCTCCTGAGTGCGGGGATTAATGGTGTGCGCTACGATGTCTGCTGCC  346
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCT-CTGAGTGCGGGGATTAATGGTGTGCGCTACGATGTCTGCTGCC  326

seq1  TTTCAACTCTTTAAAGCCATTTATTTGTTTATTTATTTATTCATTCATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCTTTAAAGCCATTTATTTGTTTATTTATTTATTCATTCATTT  376

seq1  ATTGTAAGATAAAGTGAACCCAGGTCCTCTACAAGTGCAAGTGAAGTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGATAAAGTGAACCCAGGTCCTCTACAAGTGCAAGTGAAGTGAT  426

seq1  CAAACACCACGTTAAGCCCCAGCCCCTCCTACTAAAATGCCTTGAGTAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCACGTTAAGCCCCAGCCCCTCCTACTAAAATGCCTTGAGTAGG  476

seq1  TTGAACGGTTAGCACTGAGCCCCTGAAGCTCTGAGGACTCCATGTGGGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGGTTAGCACTGAGCCCCTGAAGCTCTGAGGACTCCATGTGGGAC  526

seq1  TAAAGACTCCTAAGTAGCAGATCCTGCCTGGCTTTCTGTGAGAAAATCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTCCTAAGTAGCAGATCCTGCCTGGCTTTCTGTGAGAAAATCAG  576

seq1  ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGGTGGGGTGAAACACAACTGTTGACTCCTCTCCTGGGTTTCTA  626

seq1  TGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGGCCAGCCTCTATACAGCAGGTCGCTCCTGGGATCCAGGCTCT  676

seq1  GTTGACAGCTGCAAAGACACAAAGTGGAAAATTAAGGAACTGGAAGCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGCTGCAAAGACACAAAGTGGAAAATTAAGGAACTGGAAGCTAT  726

seq1  GGGGGTTTCTCAGCTTTCATCTGGTCAGGCTTTGTACCTTCCAACCTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTTCTCAGCTTTCATCTGGTCAGGCTTTGTACCTTCCAACCTTCC  776

seq1  CTGCCCACCTGTCCATCGCCACCCTCCTTGCTGTGTTCAGCAGGCAGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACCTGTCCATCGCCACCCTCCTTGCTGTGTTCAGCAGGCAGGTT  826

seq1  CCTAGGTACACACAGATGAGCAGGAGGTAAACGCTCACAGGCTCTGTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTACACACAGATGAGCAGGAGGTAAACGCTCACAGGCTCTGTGAG  876

seq1  CTTTCTTTGGCAATGAGGTTATGTCTCAAACCCTATGCAGCTCTCCCACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGGCAATGAGGTTATGTCTCAAACCCTATGCAGCTCTCCCACC  926

seq1  CATGGATGACTGAGAAGAGGGGGCTGAGAGGCCTTACTTGGCTTTCAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGACTGAGAAGAGGGGGCTGAGAGGCCTTACTTGGCTTTCAGGT  976

seq1  ACAGCTGGGATTTGTGACTTTGTGGGCTCTTTTCCACCCTTTACCTCACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGATTTGTGACTTTGTGGGCTCTTTTCCACCCTTTACCTCACC  1026

seq1  CACCTCTTCTCAACCTTTTACTAGACAGAAGAGGGAGAGGGGGGAGGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTCTCAACCTTTTACTAGACAGAAGAGGGAGAGGGGGGAGGTGG  1076

seq1  AGAGAGAGAGATCTGAATTTCATTTCTTTCTTCTTTGGACTAGGAAATGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGATCTGAATTTCATTTCTTTCTTCTTTGGACTAGGAAATGG  1126

seq1  CAACAACCATCCCTCCTGAACCACCACCAACCCACCTCTCTGGGCCCTAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCATCCCTCCTGAACCACCACCAACCCACCTCTCTGGGCCCTAG  1176

seq1  AATTCACGTACCCTCCGAAAAGTTCCCAGAATTC  1230
      ||||||||||||||||||||||||||||||||||
seq2  AATTCACGTACCCTCCGAAAAGTTCCCAGAATTC  1210

seq1: chr4_129234754_129235837
seq2: B6Ng01-131A22.g_69_1141

seq1  GAATTCTAGAGACACAGGATGCAGACAAGGTGGAGAGAAGATGAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGACACAGGATGCAGACAAGGTGGAGAGAAGATGAAGACAG  50

seq1  TATGGACACGAACAACCAAGCATCCCCAGGCCGTATCATGTTTCACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACACGAACAACCAAGCATCCCCAGGCCGTATCATGTTTCACAGGC  100

seq1  TGCTGGATGAAGTCACCTTGCAGCGGGGATGCTGGTGGGAGAGATCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATGAAGTCACCTTGCAGCGGGGATGCTGGTGGGAGAGATCCCTC  150

seq1  ATAGGTGACCAGTGGGTCCCGCACTTCAGAGCCATTCCGGATGGGCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGACCAGTGGGTCCCGCACTTCAGAGCCATTCCGGATGGGCAGCT  200

seq1  GCGGGGTAGGAAATGAGGCTGGGGTCAAAGAAAAAAGACAGGATTTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTAGGAAATGAGGCTGGGGTCAAAGAAAAAAGACAGGATTTGACC  250

seq1  CTAGCTCCCTCTCCTCTCCTCTTCTTTCCGTTTCTCCAGCCTGGTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCCTCTCCTCTCCTCTTCTTTCCGTTTCTCCAGCCTGGTTGAAC  300

seq1  CTTGTCTCTGAATTCACCAACTATGTGTACATTTGACCTTAGGAAGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCTGAATTCACCAACTATGTGTACATTTGACCTTAGGAAGGTCC  350

seq1  CTTCCTCTAGCTGGGCCTCTTCCGTGATGTATGCTAGGGAAGATAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTAGCTGGGCCTCTTCCGTGATGTATGCTAGGGAAGATAGGAGT  400

seq1  GCTGCTATTTTCCAGAGCCTTTAGTTATGGTCCATTTAGGTTTTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATTTTCCAGAGCCTTTAGTTATGGTCCATTTAGGTTTTTTCTCC  450

seq1  TGGATACACAACCTTTCAACCCCATGCCATCCCTTCACCAATCTTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACACAACCTTTCAACCCCATGCCATCCCTTCACCAATCTTATGTC  500

seq1  CTCCGCCCCCATCCCTCCACCAATCCTATCTCCTGGCCCCCATCCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCCCCATCCCTCCACCAATCCTATCTCCTGGCCCCCATCCCTTCA  550

seq1  CTAATCCCATCTTCCTCTTACCGAGATCTTGCTGTCCAGTGGGACTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCATCTTCCTCTTACCGAGATCTTGCTGTCCAGTGGGACTATGG  600

seq1  GATAGTGGCAGTTTTCACACACGTCAATGTTCTCCATCCAGTCATCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGCAGTTTTCACACACGTCAATGTTCTCCATCCAGTCATCTTCA  650

seq1  GGGTTTGAGCTGCAGACACAGCCCATGATCCCTGAAGGAATGTAGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAGCTGCAGACACAGCCCATGATCCCTGAAGGAATGTAGAGAGG  700

seq1  CCTGAAGGAGCTGCCCCTAAGCCACTCGCCCCAACATCAGACATCCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGAGCTGCCCCTAAGCCACTCGCCCCAACATCAGACATCCTAGA  750

seq1  GCCCTGTTCTGGAAGTTACAAAAAGTACCCGAGATCGTCAGCTCAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCTGGAAGTTACAAAAAGTACCCGAGATCGTCAGCTCAGAGGC  800

seq1  CCCCATTGGCCGCAGACAGAAGCGCTGAATCGTGGGATTCAAGCTCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGGCCGCAGACAGAAGCGCTGAATCGTGGGATTCAAGCTCCTGA  850

seq1  CTGGGTTCCCTCTGAGCCCTCAAGCACCAAGTTCACAGGAGGCCCAGGCC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGGTTCCCTCTGAGCCCTCAAGCACCAAGTTCACAGGAGGCCCA-GCC  899

seq1  CAAGGCTAGTCCCACCCTCCCACCTGGGATGGGCAAACCGCCACAGGCAT  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGGCTAGTCCCACCCT-CCACCTGGGATGGGCAAACCGCCACAGGCAT  948

seq1  CTTTGTTAGTCTAGTTACCCACTTCCTGCCGCCCCAGCTCTGCTAGCCTC  1000
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CTTTGTTAGTCTAGTTACCCACTTCCTG-CGCCCCAGCTCTGCTAG-CTC  996

seq1  CTCCTTTGGGGGACTACCTGGGAGACATCACACACACTTTGCCAAGTTCT  1050
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CTCCTTTGGGGGACTACTTGGGAGACATCACACACACTTTG-CAAGTTCT  1045

seq1  GGGGGAAACCGAGAGTTTCATTCCACCCTCCTCC  1084
      ||||  |||||||||||||||| || |||||   
seq2  GGGG--AACCGAGAGTTTCATT-CATCCTCC---  1073