BAC Information

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BAC

Clone NameB6Ng01-131D15
Chromosome4 (Build37)3 (Build37)
Map Location 145,731,191 - 145,732,08512,857,572 - 12,858,265
singlet/doubletsingletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D15.bB6Ng01-131D15.g
ACCDH932337DH932338
length1,1581,216
definitionDH932337|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D15, 5' end.DH932338|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,731,191 - 145,732,085)(12,857,572 - 12,858,265)
sequence
gaattctctgatgaatcctcaaactgaattttttagtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagatggccattttcagtaaaggatttgtcacattgactacatttgt
aaggtttctcacctgtatgatttctctgatgaattctcagatggccattt
tcagtaaaggatttgtcacattgactacatttgtaaggtttctctcctgt
atgaattctctgatgaatattaagatgggatttttgggtaaagcatttgt
cacattcactgcatttgtaaggtttatctcctgtatgaatcctctgatga
attctcagattgcctttttcagtaaagcatttctcacatacaatgcattt
gtaaggtttctctcctgtatgaattctctgatgaatattaagatgagatt
tttgggtaaagcatttgtcacattcactacatttgtaaggtttctctcct
gtatgaattctctgatgaatattaagatgaaatttgtgggtaaagcattt
gtcacattcactgcatttataaattttctcttctgcatgaattccctgat
ggatactaagatggatctgatgggtaaagcatttgtcacttttactactt
ctgtaatgtttcttttcatgataaattctctgctgactttgaagtttgtc
tctctgggtaagatatttgtcaaatttactacatttgtaagggttcactc
cagtattatttcgtttcaccatgactttatgtttagaaataaaagccttc
tcagattctgcattttccgttgtgttttttcttctgcatgtggattccct
gattgagactaatgatagaaaacaaagttaaactgtttacagagtcattg
tattttgcaaactttttttattgttctgggcttaagtctttttttggttc
gaaattgaagagcatcagaggtgtgatagttttgtaaggtgtacattggg
gggcttcaagtataccttgctaggttgtcccatttagaagacttcctctt
ggaatattcatgtgtttcatggacaaagtaactggttgtctctgattcaa
gaccttttcatacttccacctattgcaatggatttcctgaaagtgggagg
ggcaatta
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaacaatccaatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttactggaaaaggca
gtctgagaattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtggcaaatgctttactgaaaaaagcagtctgagaattcatca
gagaattcatacaggacagaaaccttacaaatgcagtgaatgtggcaaat
gctttacccaacaatccaatcttagtattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatc
caatcttagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgcttttcccgaaaattccatcttggtattcat
cagagaattcatacaggagagaatccttataaatgtagtgaatgtaacaa
atgctttacccaaaattcctatcttaatattcatcagagaattcatgcag
gagagaaaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaa
ggcagtctgacaattcatcagagaattcatacaggagagaaaccttacaa
atgtagtgaatgtgacaaatgcttttcccgaaaattccatcttggtattc
atcagagaattcatacaagagagaaacctcacaaatgtagtgaatgtgac
aaatgctttacccagaaatcccatcttagtattcatcagaaaattcatac
aagagagaaaccttacaaatagattgtatgtgacaaatacatactcacaa
tgtcagtctgagaaatcatcagtttttcatgcagtagagatctttataaa
tgagtgaacgagacaatcctttacaagatatatcatctcaaattcattag
agatacttagagaagaccaacttttcaaatatattgtaggtatgaatcct
ttccttttggcctagtttctagaattaactggaataaacttacagctaga
acttatgctctatgcatttatgagaaatgcttggacttcatttcagtccg
aagaacatctaagaccttttagggaagaattctgttagaaatgtttattc
tgacaacttgagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145731191_145732085
seq2: B6Ng01-131D15.b_308_1202

seq1  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50

seq1  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100

seq1  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150

seq1  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250

seq1  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTG  300

seq1  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATG  350

seq1  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGAAATGTTTCT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAATGTTTCT  400

seq1  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450

seq1  TATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCG  500

seq1  TTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGCA-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGCAT  550

seq1  TTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAAT  600

seq1  GGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTA-TTTGCAAAC-  647
      | ||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GATAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTTGCAAACT  650

seq1  TTCTTTAGTGTTCCTGGGCTTAAGTC-TTTTTTGGTTCGAAAATTGAAGA  696
      || |||| |||| ||||||||||||| |||||||||||| ||||||||||
seq2  TTTTTTATTGTT-CTGGGCTTAAGTCTTTTTTTGGTTCG-AAATTGAAGA  698

seq1  GCATCAGAGGTGTGATTAGTTTTGTAAGGTGTACATTGGGGGGCTTCAAG  746
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCATCAGAGGTGTGA-TAGTTTTGTAAGGTGTACATTGGGGGGCTTCAAG  747

seq1  TATCACATTGCTAAGTTTGTCCCATTTAGAAGACTT-CTCTT-GAATATT  794
      ||| || ||||| || |||||||||||||||||||| ||||| |||||||
seq2  TAT-ACCTTGCT-AGGTTGTCCCATTTAGAAGACTTCCTCTTGGAATATT  795

seq1  CATGTG-TTCATGGACAATGT-ACTGGCTGTCT-TGATCCAAGACCTTCT  841
      |||||| ||||||||||| || ||||| ||||| |||| ||||||||| |
seq2  CATGTGTTTCATGGACAAAGTAACTGGTTGTCTCTGATTCAAGACCTTTT  845

seq1  CATACTTTCCACATA-TGCAAT-GATTTTCTGAAAAAAAGTGGGGAGGGG  889
      ||||| |||||| || |||||| ||||| |||    ||||| ||||||||
seq2  CATAC-TTCCACCTATTGCAATGGATTTCCTG----AAAGT-GGGAGGGG  889

seq1  CAATTA  895
      ||||||
seq2  CAATTA  895

seq1: chr3_12857572_12858265
seq2: B6Ng01-131D15.g_614_1283

seq1  ACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCAGAGAATTCAT  50
      |||||||||||||| ||   ||| |||||| |||||||||||||||||||
seq2  ACAAATGCTTTACCCAAAATTCCTATCTTAATATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGA  100
       |||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGA  100

seq1  AAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTT  150
      ||||  || ||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAAGGCAGTCTGACAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTTATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  250
      ||| ||||||||||||||||| || |||||||| ||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGAATG  250

seq1  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300

seq1  ATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAATACAATACT  350
      ||||| ||||||||||||||||||||| |||||||||||||||| |||||
seq2  ATACAAGAGAGAAACCTTACAAATAGATTGTATGTGACAAATAC-ATACT  349

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      |||||||||||||| |||||||||||||| |||||| |||||||| ||||
seq2  CACAATGTCAGTCTGAGAAATCATCAGTT-TTTCATGCAGTAGAG-ATCT  397

seq1  TTATAAATGAAGTGAACGAGACAATTCTTTACCAAGATATATCATCTCAA  450
      ||||||||| ||||||||||||||| ||||| |||||||||||||||| |
seq2  TTATAAATG-AGTGAACGAGACAATCCTTTA-CAAGATATATCATCTC-A  444

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AATTCATTAGAG-ATACTTAGAGAAGACCAACTTTTCAAATATATTGTAG  493

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAAT--  548
      ||||||||||||||||||||||||| || ||||| | |||| | ||||  
seq2  GTATGAATCCTTTCCTTTTGGCCTAGTTTCTAGAAT-TAACTG-GAATAA  541

seq1  ACTTACAGGCTAGAAACTTA-ACTC-ATGCATTATATGAAGAAATATCTT  596
      ||||||| ||||| ||||||  ||| ||||||| |||| ||||||  |||
seq2  ACTTACA-GCTAG-AACTTATGCTCTATGCATT-TATG-AGAAAT-GCTT  586

seq1  TGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAG  646
       |||||||||||| ||| || |||||||||||| || ||||||||  |||
seq2  GGACTTCATTTCA-GTCCGA-AGAACATCTAAG-ACCTTTTAGGG--AAG  631

seq1  TATTTCTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCC  694
       | ||||||| |   ||||||| ||||| |||||  |||||| |||||
seq2  -AATTCTGTTAG---AAATGTT-TATTC-TGACA--ACTTGA-GCTCC  670