BAC Information

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BAC

Clone NameB6Ng01-131F14
Chromosome4 (Build37)
Map Location 80,515,981 - 80,660,938
singlet/doubletdoublet
Overlap geneD4Bwg0951e
Upstream geneTyrp1
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131F14.bB6Ng01-131F14.g
ACCDH932428DH932429
length4701,060
definitionDH932428|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F14, 5' end.DH932429|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,515,981 - 80,516,455)(80,659,868 - 80,660,938)
sequence
ttccacacagttgttgggatataaagtattgcagccctgtagagagcctc
tatggagtttcctcaaaaacgatcaacagtcccaccatttgatccagctg
gggttttgtgtttttgttgttgttggtggtggtggttttgtttttgtttt
gttttgcctgcatatatggctgtccacaatggggtcagatgacagtgtca
catttcttagaactcacacttcttaaggttctgtaaaaacagcaaatgct
cataaccactgagcaatctctctacttctaccacccccctttttcctttt
gtgggtatgttttgcactgatgtacgcctgtgcatgacctttctgcctaa
tgttacaaaagccaggagattacatcttatcccctaggactgaggttata
cctagttatgagctgccatgtgggtcctggggaattgaactgatggcttc
tagaagagcaaccagtctca
gaattcttcagaaagtactatttataacaacaagtaataataaagtaact
aagaataaatctaagaaactggccaatatttatatgaaaatgtttaaatg
attatattaaaatatggttgtgagaaacctagatacataaacaatattta
tgcattaaagactcagtattgtatgaagatttgctccaattcatctttaa
gctaatgcatagaaaaattaaaaatttccattagcaaaatttaataaaac
aattgaaggatgtattgatctataggtcagggtcatcaagttgtctagaa
ggacaggtagagaagcttgaccgtcatgtgtggattgtaaatttcctgta
tttatggtgtggtgtgcttgagtggaatatattaatgccaaacgaacaga
atgttagttcagtggaagctgcatgccaaaaaaaaaaaaaaaaaaaaaaa
aaggagacaaacaaacatgcaaaaaaggatatcaggcatattgtactgaa
aaataaagaagaaaatctgacctttacaattagtggagctatggcagttt
ttaaacataagggcagaaagtagaattgtattactacacatgtgaaaatt
aacaaatattttagaaggcagtacagaagcaaattttataaattctaaaa
cagaatggaaatatctgttgtaaaagaagtatgagacctgattagaaaca
cccctaaaactcactggacataaaatcaagggacaaatcccaatgagagc
tgacacttcagcgctgtggagaagaacaaacaaatcattgacgttcacca
gcaggaagtgtctcccagcagaaattacagtgaaagaaacagatgtacaa
taaagaaaatatgggggactttggtatagcattggaaatgttaaatgagc
taaatacctataaaaatggaaaaaaaagaaatgtgattccattcaatgaa
gtttctgacaacaaaagtaaacgagtattgtttaaactgcagatgggagc
aaccataggaatgtacggagttccagaaccccccttcaagcttttactgg
attccttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80515981_80516455
seq2: B6Ng01-131F14.b_49_523

seq1  GAATTCTTCCACACAGTTGTTGGGATATAAAGTATTGCAGCCCTGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACACAGTTGTTGGGATATAAAGTATTGCAGCCCTGTAGAG  50

seq1  AGCCTCTATGGAGTTTCCTCAAAAACGATCAACAGTCCCACCATTTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTATGGAGTTTCCTCAAAAACGATCAACAGTCCCACCATTTGATC  100

seq1  CAGCTGGGGTTTTGTGTTTTTGTTGTTGTTGGTGGTGGTGGTTTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGTTTTGTGTTTTTGTTGTTGTTGGTGGTGGTGGTTTTGTTTT  150

seq1  TGTTTTGTTTTGCCTGCATATATGGCTGTCCACAATGGGGTCAGATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGCCTGCATATATGGCTGTCCACAATGGGGTCAGATGACA  200

seq1  GTGTCACATTTCTTAGAACTCACACTTCTTAAGGTTCTGTAAAAACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATTTCTTAGAACTCACACTTCTTAAGGTTCTGTAAAAACAGCA  250

seq1  AATGCTCATAACCACTGAGCAATCTCTCTACTTCCACCACCCCCCTTTTA  300
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AATGCTCATAACCACTGAGCAATCTCTCTACTTCTACCACCCCCCTTTTT  300

seq1  CCTTTTGTGGGTATGTTTTGCACTGATGTACGCCTGTGCATGACCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTGGGTATGTTTTGCACTGATGTACGCCTGTGCATGACCTTTCT  350

seq1  GCCTAATGTTACAAAAGCCAGGAGATGACATCAGATCCCCTAGGACTGAG  400
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  GCCTAATGTTACAAAAGCCAGGAGATTACATCTTATCCCCTAGGACTGAG  400

seq1  GTAATACCTAGTTATGAGCTGCCATGTGGGTCCTGGGGAATTGAACTGAT  450
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACCTAGTTATGAGCTGCCATGTGGGTCCTGGGGAATTGAACTGAT  450

seq1  GGCTTCTAGAAGAGCAACCAGTCTC  475
      |||||||||||||||||||||||||
seq2  GGCTTCTAGAAGAGCAACCAGTCTC  475

seq1: chr4_80659868_80660938
seq2: B6Ng01-131F14.g_70_1129 (reverse)

seq1  GCTAGGGAATCCAGTATAGGCTTGAAGGGGGGTGTCTGAGAACTCCTTTA  50
      |||| ||||||||||| | |||||||||||||| |||| |||||||  ||
seq2  GCTAAGGAATCCAGTAAAAGCTTGAAGGGGGGT-TCTG-GAACTCC-GTA  47

seq1  CATTCCCTATGGGTTTGCCTCCCATCTGCAGTTTAAACAATACTCGTTTA  100
      |||| |||||||  ||| ||||||||||||||||||||||||||||||||
seq2  CATT-CCTATGG--TTG-CTCCCATCTGCAGTTTAAACAATACTCGTTTA  93

seq1  CTTTTGTGTGTCAGAAACTTCATTGAATGGAATCACATTTTCTTTTTTTT  150
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTTGT-TGTCAGAAACTTCATTGAATGGAATCACA-TTTCTTTTTTTT  141

seq1  CCATTTTTTATTAGGTATTTAGCTCATTT-ACATTTCCAATGCTATACCA  199
      ||||||||   |||||||||||||||||| ||||||||||||||||||| 
seq2  CCATTTTT--ATAGGTATTTAGCTCATTTAACATTTCCAATGCTATACC-  188

seq1  AAAGTCCCCCATATTTTCTTTATTGTACATCTGTTTCTTTCACTGTAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCCATATTTTCTTTATTGTACATCTGTTTCTTTCACTGTAATT  238

seq1  TCTGCTGGGAGACACTTCCTGCTGGTGAACGTCAATGATTTGTTTGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGAGACACTTCCTGCTGGTGAACGTCAATGATTTGTTTGTTCT  288

seq1  TCTCCACAGCGCTGAAGTGTCAGCTCTCATTGGGATTTGTCCCTTGATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGCGCTGAAGTGTCAGCTCTCATTGGGATTTGTCCCTTGATTT  338

seq1  TATGTCCAGTGAGTTTTAGGGGTGTTTCTAATCAGGTCTCATACTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGTGAGTTTTAGGGGTGTTTCTAATCAGGTCTCATACTTCTTT  388

seq1  TACAACAGATATTTCCATTCTGTTTTAGAATTTATAAAATTTGCTTCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGATATTTCCATTCTGTTTTAGAATTTATAAAATTTGCTTCTGT  438

seq1  ACTGCCTTCTAAAATATTTGTTAATTTTCACATGTGTAGTAATACAATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTCTAAAATATTTGTTAATTTTCACATGTGTAGTAATACAATTC  488

seq1  TACTTTCTGCCCTTATGTTTAAAAACTGCCATAGCTCCACTAATTGTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGCCCTTATGTTTAAAAACTGCCATAGCTCCACTAATTGTAAA  538

seq1  GGTCAGATTTTCTTCTTTATTTTTCAGTACAATATGCCTGATATCCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATTTTCTTCTTTATTTTTCAGTACAATATGCCTGATATCCTTTT  588

seq1  TTGCATGTTTGTTTGTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTGGCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTTTGTTTGTCTCCTTTTTTTTTTTTTTTTTTTTTTTTTGGCAT  638

seq1  GCAGCTTCCACTGAACTAACATTCTGTTCGTTTGGCATTAATATATTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCCACTGAACTAACATTCTGTTCGTTTGGCATTAATATATTCCA  688

seq1  CTCAAGCACACCACACCATAAATACAGGAAATTTACAATCCACACATGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCACACCACACCATAAATACAGGAAATTTACAATCCACACATGAC  738

seq1  GGTCAAGCTTCTCTACCTGTCCTTCTAGACAACTTGATGACCCTGACCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCTTCTCTACCTGTCCTTCTAGACAACTTGATGACCCTGACCTA  788

seq1  TAGATCAATACATCCTTCAATTGTTTTATTAAATTTTGCTAATGGAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAATACATCCTTCAATTGTTTTATTAAATTTTGCTAATGGAAATT  838

seq1  TTTAATTTTTCTATGCATTAGCTTAAAGATGAATTGGAGCAAATCTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTCTATGCATTAGCTTAAAGATGAATTGGAGCAAATCTTCAT  888

seq1  ACAATACTGAGTCTTTAATGCATAAATATTGTTTATGTATCTAGGTTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTGAGTCTTTAATGCATAAATATTGTTTATGTATCTAGGTTTCT  938

seq1  CACAACCATATTTTAATATAATCATTTAAACATTTTCATATAAATATTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATATTTTAATATAATCATTTAAACATTTTCATATAAATATTGG  988

seq1  CCAGTTTCTTAGATTTATTCTTAGTTACTTTATTATTACTTGTTGTTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTTAGATTTATTCTTAGTTACTTTATTATTACTTGTTGTTATA  1038

seq1  AATAGTACTTTCTGAAGAATTC  1071
      ||||||||||||||||||||||
seq2  AATAGTACTTTCTGAAGAATTC  1060