BAC Information

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BAC

Clone NameB6Ng01-131J12
Chromosome4 (Build37)
Map Location 99,830,560 - 99,983,792
singlet/doubletdoublet
Overlap geneRor1
Upstream geneLOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J12.bB6Ng01-131J12.g
ACCDH932612DH932613
length9141,146
definitionDH932612|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J12, 5' end.DH932613|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,982,875 - 99,983,792)(99,830,560 - 99,831,708)
sequence
gaattctttatattggcttggtctctgaacaggtttgtgcagtctcttaa
ctggtatgaaaagacctagtccacttgtgggcagcaccattccctaggca
gaggatcccgaactatatgagtggagaaataaagctgattacaagcacac
aactgagcatgtgcatattgttactctctgctctggactttgagtgtgat
gtgaccagctgtcttgagttcctggtgttgtgctgtccccctagtaatgg
actgtaacctggaattgtgagctaaaattgagccctcctcctttaggtgg
cttttggtcagggtattttatcacagcagcagaaatgaacaaagatgctc
agtgtctctaagtcctagcttcctggaaaccagtaggaatgtatcattgg
tataaggtactatttatgttgtctagtatgtggaagttactctataatca
ttcagaattattgctaattttattattatattgatatgattaatgttgac
aagaaagcttattctgtggtaaaccatgagaacaatacatgccatttggt
gatatcaatgtttcttacaagcctcatctaactaaagcattgtacacgtt
cttctcacattctgggttggcaattacatgtactagaatgccaagagtag
aaatccaactctcgggatggagtgattgctcagcagttaagaactctgac
tgttcttctgaaggtcttgagttcagaacccagcaaccacatggtggctc
acaaccatccaccatgagatcctatgctctcttctggggagtctgaagac
agctgcagtgtacttacatataataaataaatctttaagaagaaagaaag
aaagaagaaagaatgaaagaaagaaagaagaagaaagagagagagagaga
gagggagggaggga
gaattcatcgtgttggccaaagaacagagggccctaggtctgcaatcaag
ccgagacgctgcctgcttccctctgggcattagtgcccatgtctataaaa
tgagctgttgcatcagacaccccttcatgttctgattttctttttcccat
ttcaacattctttctttctaactggcactgtcccttggtgcttcaaaatg
tttggaactatgaatactcactttatcttgaggatagaggaggtttacac
agaagtaacatgctaagaaaaatccattttgaaattgcaatctaagttga
atgtgtgtagcaaaatattagtgtcactcatgcataaagatgatgggaga
ataataatgtacagactgttggtgattatcccatatttctgttttccaaa
ttttctttaatagccatgtagtaatattctttaaataaaataataagcat
gtgcaagcaattataagttcatctggtaggaaaaaaggaataaaatttac
acaaaacatatgccagggaaaaggagaacacctgtatatgaaaaatggtt
cgttgtgatttctaagatgagcccgagaatccatccctcggtgaaggttg
gcatgtgacgtgtgtctttgtgtggctgttgaaagactcagacaggatgg
aagacagccaaactggcttcttgtacaaaagcagtggcagagacacagag
tagaacaaccccagtttttctttctccatttgaagaccagactgggtgaa
aagaggaagaaacagagagatttcaccattagatcatgcacatatcgcat
tccagatgtgtatgatgaattcttactgtgtcagctaaggaggtcataca
acctagcacaatgatggagactttccctcatctggacccaccgtagaatg
agggaataattggttacaggtagctgagcaacatggctctccctgtttct
catctggggtatctttgaatgccaggcatcccatcccagagttcagtgtg
gctctctctggaggacccccgttccaagtcttcttcttttgttactgggc
aggcccttcagatctcaaaaggcagtcctagttggtgctctcatttcccc
ctctcttaacgtcttctgggagagccttcagatggttttcattcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99982875_99983792
seq2: B6Ng01-131J12.b_45_958 (reverse)

seq1  TCCCTCCCTCCCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTT  50
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TCCCTCCCTCCCTCTCTCTCTCTCTCTCTTTCTT--CTTCTTTCTTTCTT  48

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAAAGATTTATTTATTATA  100
      || ||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TCATTCTTTC-TTCTTTCTTTCTTTC-TTCTTAAAGATTTATTTATTATA  96

seq1  TGTAAGTACACTGCAGCTGTCTTCAGACTCCCCAGAAGAGAGCATAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGCAGCTGTCTTCAGACTCCCCAGAAGAGAGCATAGGAT  146

seq1  CTCATGGTGGATGGTTGTGAGCCACCATGTGGTTGCTGGGTTCTGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTGGATGGTTGTGAGCCACCATGTGGTTGCTGGGTTCTGAACTC  196

seq1  AAGACCTTCAGAAGAACAGTCAGAGTTCTTAACTGCTGAGCAATCACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTCAGAAGAACAGTCAGAGTTCTTAACTGCTGAGCAATCACTCC  246

seq1  ATCCCGAGAGTTGGATTTCTACTCTTGGCATTCTAGTACATGTAATTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAGAGTTGGATTTCTACTCTTGGCATTCTAGTACATGTAATTGCC  296

seq1  AACCCAGAATGTGAGAAGAACGTGTACAATGCTTTAGTTAGATGAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAATGTGAGAAGAACGTGTACAATGCTTTAGTTAGATGAGGCTT  346

seq1  GTAAGAAACATTGATATCACCAAATGGCATGTATTGTTCTCATGGTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACATTGATATCACCAAATGGCATGTATTGTTCTCATGGTTTAC  396

seq1  CACAGAATAAGCTTTCTTGTCAACATTAATCATATCAATATAATAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATAAGCTTTCTTGTCAACATTAATCATATCAATATAATAATAAA  446

seq1  ATTAGCAATAATTCTGAATGATTATAGAGTAACTTCCACATACTAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAATAATTCTGAATGATTATAGAGTAACTTCCACATACTAGACAA  496

seq1  CATAAATAGTACCTTATACCAATGATACATTCCTACTGGTTTCCAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGTACCTTATACCAATGATACATTCCTACTGGTTTCCAGGAAG  546

seq1  CTAGGACTTAGAGACACTGAGCATCTTTGTTCATTTCTGCTGCTGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTAGAGACACTGAGCATCTTTGTTCATTTCTGCTGCTGTGATA  596

seq1  AAATACCCTGACCAAAAGCCACCTAAAGGAGGAGGGCTCAATTTTAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCCTGACCAAAAGCCACCTAAAGGAGGAGGGCTCAATTTTAGCTC  646

seq1  ACAATTCCAGGTTACAGTCCATTACTAGGGGGACAGCACAACACCAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCAGGTTACAGTCCATTACTAGGGGGACAGCACAACACCAGGAA  696

seq1  CTCAAGACAGCTGGTCACATCACACTCAAAGTCCAGAGCAGAGAGTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGACAGCTGGTCACATCACACTCAAAGTCCAGAGCAGAGAGTAACA  746

seq1  ATATGCACATGCTCAGTTGTGTGCTTGTAATCAGCTTTATTTCTCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATGCTCAGTTGTGTGCTTGTAATCAGCTTTATTTCTCCACTC  796

seq1  ATATAGTTCGGGATCCTCTGCCTAGGGAATGGTGCTGCCCACAAGTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCGGGATCCTCTGCCTAGGGAATGGTGCTGCCCACAAGTGGAC  846

seq1  TAGGTCTTTTCATACCAGTTAAGAGACTGCACAAACCTGTTCAGAGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTTCATACCAGTTAAGAGACTGCACAAACCTGTTCAGAGACCA  896

seq1  AGCCAATATAAAGAATTC  918
      ||||||||||||||||||
seq2  AGCCAATATAAAGAATTC  914

seq1: chr4_99830560_99831708
seq2: B6Ng01-131J12.g_71_1216

seq1  GAATTCATCGTGTTGGCCAAAGAACAGAGGGCCCTAGGTCTGCAATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGTGTTGGCCAAAGAACAGAGGGCCCTAGGTCTGCAATCAAG  50

seq1  CCGAGACGCTGCCTGCTTCCCTCTGGGCATTAGTGCCCATGTCTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGACGCTGCCTGCTTCCCTCTGGGCATTAGTGCCCATGTCTATAAAA  100

seq1  TGAGCTGTTGCATCAGACACCCCTTCATGTTCTGATTTTCTTTTTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTTGCATCAGACACCCCTTCATGTTCTGATTTTCTTTTTCCCAT  150

seq1  TTCAACATTCTTTCTTTCTAACTGGCACTGTCCCTTGGTGCTTCAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTCTTTCTTTCTAACTGGCACTGTCCCTTGGTGCTTCAAAATG  200

seq1  TTTGGAACTATGAATACTCACTTTATCTTGAGGATAGAGGAGGTTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACTATGAATACTCACTTTATCTTGAGGATAGAGGAGGTTTACAC  250

seq1  AGAAGTAACATGCTAAGAAAAATCCATTTTGAAATTGCAATCTAAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAACATGCTAAGAAAAATCCATTTTGAAATTGCAATCTAAGTTGA  300

seq1  ATGTGTGTAGCAAAATATTAGTGTCACTCATGCATAAAGATGATGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTAGCAAAATATTAGTGTCACTCATGCATAAAGATGATGGGAGA  350

seq1  ATAATAATGTACAGACTGTTGGTGATTATCCCATATTTCTGTTTTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGTACAGACTGTTGGTGATTATCCCATATTTCTGTTTTCCAAA  400

seq1  TTTTCTTTAATAGCCATGTAGTAATATTCTTTAAATAAAATAATAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAATAGCCATGTAGTAATATTCTTTAAATAAAATAATAAGCAT  450

seq1  GTGCAAGCAATTATAAGTTCATCTGGTAGGAAAAAAGGAATAAAATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCAATTATAAGTTCATCTGGTAGGAAAAAAGGAATAAAATTTAC  500

seq1  ACAAAACATATGCCAGGGAAAAGGAGAACACCTGTATATGAAAAATGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATATGCCAGGGAAAAGGAGAACACCTGTATATGAAAAATGGTT  550

seq1  CGTTGTGATTTCTAAGATGAGCCCGAGAATCCATCCCTCGGTGAAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGATTTCTAAGATGAGCCCGAGAATCCATCCCTCGGTGAAGGTTG  600

seq1  GCATGTGACGTGTGTCTTTGTGTGGCTGTTGAAAGACTCAGACAGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACGTGTGTCTTTGTGTGGCTGTTGAAAGACTCAGACAGGATGG  650

seq1  AAGACAGCCAAACTGGCTTCTTGTACAAAAGCAGTGGCAGAGACACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCAAACTGGCTTCTTGTACAAAAGCAGTGGCAGAGACACAGAG  700

seq1  TAGAACAACCCCAGTTTTTCTTTCTCCATTTGAAGACCAGACTGGGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAACCCCAGTTTTTCTTTCTCCATTTGAAGACCAGACTGGGTGAA  750

seq1  AAGAGGAAGAAACAGAGAGATTTCACCATTAGATCATGCACATATCGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGAAACAGAGAGATTTCACCATTAGATCATGCACATATCGCAT  800

seq1  TCCAGATGTGTATGATGAATTCTTACTGTGTCAGCTAAGGAGGTCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGTGTATGATGAATTCTTACTGTGTCAGCTAAGGAGGTCATACA  850

seq1  ACCTAGCACCAATGATGGAGACTTTCCCCTCATCTGGACCCACCGTAGAA  900
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ACCTAGCA-CAATGATGGAGACTTT-CCCTCATCTGGACCCACCGTAGAA  898

seq1  TGAGGGAATAATTGGTTACAGGTAGCTGAGCAACATGGCTCTCCCTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAATAATTGGTTACAGGTAGCTGAGCAACATGGCTCTCCCTGTTT  948

seq1  CCTCATCTGGGGTATCTTTGAATGCCAGGCATCCCATCCCAGAGTTCAGT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCATCTGGGGTATCTTTGAATGCCAGGCATCCCATCCCAGAGTTCAGT  997

seq1  GT-GCTCTCTCTGGAGGACCCCCTTCCAAAGTCTTCTTCTTTTGTCACTG  1049
      || |||||||||||||||||||| | | ||||||||||||||||| ||||
seq2  GTGGCTCTCTCTGGAGGACCCCCGTTCCAAGTCTTCTTCTTTTGTTACTG  1047

seq1  GGCA-GCCCTTCAGATCTCCAAAGGGCAGTCCTAGTT-GTGC-CTCATTT  1096
      |||| ||||||||||||| |||| ||||||||||||| |||| |||||||
seq2  GGCAGGCCCTTCAGATCT-CAAAAGGCAGTCCTAGTTGGTGCTCTCATTT  1096

seq1  CCCCCTCTCTTACCGGTCCTTTCT-GGAGAGCCTTCAGAAGTGTTTTCAT  1145
      |||||||||||| | |||  |||| |||||||||||||| | ||||||||
seq2  CCCCCTCTCTTAAC-GTC--TTCTGGGAGAGCCTTCAGATG-GTTTTCAT  1142

seq1  TCAC  1149
      ||||
seq2  TCAC  1146