BAC Information

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BAC

Clone NameB6Ng01-133H12
Chromosome7 (Build37)4 (Build37)
Map Location 100,799,090 - 100,799,50293,131,047 - 93,131,473
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H12.bB6Ng01-133H12.g
ACCDH934007DH934008
length229319
definitionDH934007|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H12, 5' end.DH934008|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,799,090 - 100,799,502)(93,131,047 - 93,131,473)
sequence
tctttttagctctgtactcaaattttaaattgggttatttggtttgttgg
tgcctaactttttgagtatgtatatatatgaatgtatatatacatatata
tatatatatatatatatatatatatatatacatgcgtgcatgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgaaagagagagatatatagatatagac
atagatagatatatatatatagatataga
acaccataggaatcttaagtggctctgaagcacttaaagaaatgttcaaa
gtccttagtggtcaggaaaatgcaaatcaaaatgaccctgagattccacc
tttcaccaatcagaatggctaagatcaaaacctcaggcaacagcacatgt
tgacaagaatggggagaaagaggaacactcctccacactccttgcttgtg
tgatggcaatctggtacaaccactctggaaatcaatctggagatttctca
gaaaattggaaatagatctacctcaagacctagctaaaccacttgtactg
gctgttttttgttttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100799090_100799502
seq2: B6Ng01-133H12.b_123_280 (reverse)

seq1  TCTATATC--TATATCTATATCTATCTATAACTATATCTATCTATATCTC  48
      ||||||||  ||||| |||||||||||||  |||||||||| ||| ||||
seq2  TCTATATCTATATATATATATCTATCTATGTCTATATCTATATATCTCTC  50

seq1  TAATCTAATCTATATCTATCTATATATAATGCATATATATATATGCATTT  98
      |  | | |   | |   |   | | | |   || | | | | |||||   
seq2  T-CTTTCACACACACACACACACACACA---CACACACACACATGCACGC  96

seq1  GTGTGTATAATTTAGCAAGTCCCATTTAATTCTGCATATGTATTTA-ATA  147
       ||| ||||              || ||  | |  |||| ||| || |||
seq2  ATGTATATA-------------TATATATATATATATATATATATATATA  133

seq1  TTTGT-GAGAAACATAC-TACAAAGCAGTAAATTATAATCCAGAGTAAGA  195
      | |||  | | |||| | || | |                          
seq2  TATGTATATATACATTCATATATAT-------------------------  158

seq1  AATCTTGCCATTTTAGTTACTGTAGTAAATCAAATGTAATGAAAAACAGG  245
                                                        
seq2  --------------------------------------------------  158

seq1  TTGAATCTAACTATCCAAAAAAGAACAGAAATCAACATATTCATATTTGA  295
                                                        
seq2  --------------------------------------------------  158

seq1  AGGCAAGAATATGGTATTTCACAATTCTTGTATGATAGCATAGGTGTGAA  345
                                                        
seq2  --------------------------------------------------  158

seq1  TAGGTGATATATATATATATATATATATATATATATACATATATATATAT  395
                                                        
seq2  --------------------------------------------------  158

seq1  GTATATATATATATATAT  413
                        
seq2  ------------------  158

seq1: chr4_93131047_93131473
seq2: B6Ng01-133H12.g_238_394 (reverse)

seq1  ACAAAAAACAAAAAACAAAATTCTCTAATCCTAAGTATACTGAAACATCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACATGCTGCTTTGGCTCACCTTGTCCTCCCAGCTCGAATCATCTTCCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACTTTGCCCAACAGAAAACCTACTCAATTGAAAGAGCTTACTACTCCAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTAGATGTACCACATTTTCTGTATCCATTGCTCTGTTGCGGGGAATC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATA  250
                                | ||| ||     | |  ||||  
seq2  --------------------------ACAAAAAA-----CAAAAAACA--  17

seq1  GTGGAGCATGTGTCCTTCTTACCAGTTGGGGCACCTTCTGGATATATGCC  300
                           |||||                        
seq2  --------------------GCCAGT-----------------------A  24

seq1  CAGGAGGTATTGCAGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGG  350
      || | ||| | ||  | || |  |||||  |||| |||||||||||||| 
seq2  CAAGTGGTTTAGCTAGGTCTTGAGGTAGATCTATTTCCAATTTTCTGAGA  74

seq1  AACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCA  400
      || | ||||| ||||||||||||||||||||| ||  ||| ||| ||| |
seq2  AATCTCCAGATTGATTTCCAGAGTGGTTGTACCAGATTGCCATCACACAA  124

seq1  ACAA------TGGAGGAGTGTTCCTCTTTCTCC  427
       |||      |||||||||||||||||||||||
seq2  GCAAGGAGTGTGGAGGAGTGTTCCTCTTTCTCC  157