BAC Information

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BAC

Clone NameB6Ng01-133O21
Chromosome4 (Build37)
Map Location 29,317,635 - 29,468,655
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O21.bB6Ng01-133O21.g
ACCDH934353DH934354
length1,152378
definitionDH934353|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O21, 5' end.DH934354|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,467,485 - 29,468,655)(29,317,635 - 29,318,019)
sequence
gaattccttgactgacatatctgctaatcattgccatgttttaataaatt
taatagtcatgactatctctctattttgtgaataatccacactctaacat
cttaagtcttctggtgtgacatattactttggcaaatgataatttcagat
gtaaaaagttatacatttatccacacattgacacagtgaattcaaagggt
atgtatgacattagatgaaatttataaaggaagcctgaactttcacgaat
aaacaatttcagttgtccaatatgtctttccaagaaaacatataataaaa
tggaaatagtattaataataataatagtaataataataataaattttaat
ataagcaaagaaaaacatatcatttatagttactgactcactttaaacat
catgtctacaattacatacaacttgatgggtattatttcttgaactctag
tcaagtcatactacaaaaattaccttatggatatttcacctgtttaacac
ttaataacaaattatattctgatttagcaactttcctgagcatctgtttc
tatgtccaaaaacatatgctaatctctaagtagatcttctgccaacattt
gtattttaaaaataaacttgcatagtaaatagaaaagcagccaatgtttc
atacaataaacttgctaagtgtccagtaatctctgcctttattgtaaatg
gagtcatcttagttttcatgtgcccttaaacacaagagcagtctctgact
actcttgccatgcagcacatagcttaatcttctggtatttcattgatggc
tactttaagacctcctccatactctccaatcccaatgttcttttatagta
aagatgctcaattttccatggggtggatagctacacctctctatcccagt
tgtataattgtcattatataatgttcaataaacactcaatgccttctgca
ctccagtctgacatttttaagttaatgtgaaggaaacagaggtgctgctg
ctttatgagctgactctactagaatatagagagtaaagggtcattgactg
gtcattgaaagcaagcagtgagttaatctatgacaaataatgtccagcat
cataaagtgactgggagtcagctttctggaatctggacaaatcacaccaa
cc
aaaaataacatggcttttcattcccagattctgcagatggcaaaggatgc
ttaattaagtaacagcctccaggcacagatcaaatctagggcaatcttag
gaaaacgttgtctgatcatgaaaatctgggtgtaacggtaaaactgcttt
tgaaaggccatactttagggcagctttaaaagcccatctaaacagacatg
gcatccaaaaaaattcttagtgagttgttgacagaacatcattttggggg
atagatgtaaagttgaacttaatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgagggtgtttgtcttaacatttaatttttaaaaattttg
ccttttgttattgtaactaatgtatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29467485_29468655
seq2: B6Ng01-133O21.b_47_1198 (reverse)

seq1  GGTTGGTGTTGATTTTGTTCAGATCTCAGAAAAGCTGACT-CCAGTCACT  49
      |||||||| ||| ||||| |||||  ||| |||||||||| |||||||| 
seq2  GGTTGGTG-TGA-TTTGTCCAGATTCCAG-AAAGCTGACTCCCAGTCAC-  46

seq1  TTTATGATGCTGTGACCATTTATTGTCATAGTATTTACTCACTTGCTTTG  99
      |||||||||||| || ||||  ||||||||| ||| |||||| ||| |||
seq2  TTTATGATGCTG-GA-CATTATTTGTCATAG-ATTAACTCAC-TGC-TTG  91

seq1  CTTTCAATTGGCCAGTTCAATGACCCTTTACTTCTCTATATTCCTAGTAG  149
      ||||||| || |||| ||||||||||||||| |||||||||| |||||| 
seq2  CTTTCAA-TGACCAG-TCAATGACCCTTTAC-TCTCTATATT-CTAGTA-  136

seq1  GAGTTCAGCTTCATAAAGCAGCAGCACCTCTGTTTCCTTCAACATTAACT  199
      ||| ||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GAG-TCAGC-TCATAAAGCAGCAGCACCTCTGTTTCCTTC-ACATTAACT  183

seq1  TAAAAAATGTCAGACTGGAGGTGCAGAAGGCATTTGAGTGTTTATTGAAC  249
      | ||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  T-AAAAATGTCAGACTGGA-GTGCAGAAGGCA-TTGAGTGTTTATTGAAC  230

seq1  ATTATATAATGACAATTATACAACTGGGATAGAGAGGTGTAGCTATCCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAATGACAATTATACAACTGGGATAGAGAGGTGTAGCTATCCAC  280

seq1  CCCATGGAAAATTGAGCATCTTTACTATAAAAGAACATTGGGATTGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAAAATTGAGCATCTTTACTATAAAAGAACATTGGGATTGGAGA  330

seq1  GTATGGAGGAGGTCTTAAAGTAGCCATCAATGAAATACCAGAAGATTAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGGAGGTCTTAAAGTAGCCATCAATGAAATACCAGAAGATTAAG  380

seq1  CTATGTGCTGCATGGCAAGAGTAGTCAGAGACTGCTCTTGTGTTTAAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCTGCATGGCAAGAGTAGTCAGAGACTGCTCTTGTGTTTAAGGG  430

seq1  CACATGAAAACTAAGATGACTCCATTTACAATAAAGGCAGAGATTACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAAACTAAGATGACTCCATTTACAATAAAGGCAGAGATTACTGG  480

seq1  ACACTTAGCAAGTTTATTGTATGAAACATTGGCTGCTTTTCTATTTACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGCAAGTTTATTGTATGAAACATTGGCTGCTTTTCTATTTACTA  530

seq1  TGCAAGTTTATTTTTAAAATACAAATGTTGGCAGAAGATCTACTTAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTTATTTTTAAAATACAAATGTTGGCAGAAGATCTACTTAGAGA  580

seq1  TTAGCATATGTTTTTGGACATAGAAACAGATGCTCAGGAAAGTTGCTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATATGTTTTTGGACATAGAAACAGATGCTCAGGAAAGTTGCTAAA  630

seq1  TCAGAATATAATTTGTTATTAAGTGTTAAACAGGTGAAATATCCATAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATAATTTGTTATTAAGTGTTAAACAGGTGAAATATCCATAAGG  680

seq1  TAATTTTTGTAGTATGACTTGACTAGAGTTCAAGAAATAATACCCATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGTAGTATGACTTGACTAGAGTTCAAGAAATAATACCCATCAA  730

seq1  GTTGTATGTAATTGTAGACATGATGTTTAAAGTGAGTCAGTAACTATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTAATTGTAGACATGATGTTTAAAGTGAGTCAGTAACTATAAA  780

seq1  TGATATGTTTTTCTTTGCTTATATTAAAATTTATTATTATTATTACTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTTTTTCTTTGCTTATATTAAAATTTATTATTATTATTACTATT  830

seq1  ATTATTATTAATACTATTTCCATTTTATTATATGTTTTCTTGGAAAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTAATACTATTTCCATTTTATTATATGTTTTCTTGGAAAGACA  880

seq1  TATTGGACAACTGAAATTGTTTATTCGTGAAAGTTCAGGCTTCCTTTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACAACTGAAATTGTTTATTCGTGAAAGTTCAGGCTTCCTTTATA  930

seq1  AATTTCATCTAATGTCATACATACCCTTTGAATTCACTGTGTCAATGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCTAATGTCATACATACCCTTTGAATTCACTGTGTCAATGTGT  980

seq1  GGATAAATGTATAACTTTTTACATCTGAAATTATCATTTGCCAAAGTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATGTATAACTTTTTACATCTGAAATTATCATTTGCCAAAGTAAT  1030

seq1  ATGTCACACCAGAAGACTTAAGATGTTAGAGTGTGGATTATTCACAAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACACCAGAAGACTTAAGATGTTAGAGTGTGGATTATTCACAAAAT  1080

seq1  AGAGAGATAGTCATGACTATTAAATTTATTAAAACATGGCAATGATTAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATAGTCATGACTATTAAATTTATTAAAACATGGCAATGATTAGC  1130

seq1  AGATATGTCAGTCAAGGAATTC  1171
      ||||||||||||||||||||||
seq2  AGATATGTCAGTCAAGGAATTC  1152

seq1: chr4_29317635_29318019
seq2: B6Ng01-133O21.g_66_449

seq1  GAATTCAAAAATAACATGGCTTTTCATTCCCAGATTCTGCAGATGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAACATGGCTTTTCATTCCCAGATTCTGCAGATGGCAAA  50

seq1  GGATGCTTAATTAAGTAACAGCCTCCAGGCACAGATCAAATCTAGGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTAATTAAGTAACAGCCTCCAGGCACAGATCAAATCTAGGGCAA  100

seq1  TCTTAGGAAAACGTTGTCTGATCATGAAAATCTGGGTGTAACGGTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGAAAACGTTGTCTGATCATGAAAATCTGGGTGTAACGGTAAAAC  150

seq1  TGCTTTTGAAAGGCCATACTTTAGGGCAGCTTTAAAAGCCCATCTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGAAAGGCCATACTTTAGGGCAGCTTTAAAAGCCCATCTAAACA  200

seq1  GACATGGCATCCAAAAAAATTCTTAGTGAGTTGTTGACAGAACATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCATCCAAAAAAATTCTTAGTGAGTTGTTGACAGAACATCATTT  250

seq1  TGGGGGATAGATGTAAAGTTGAACTTAATGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATAGATGTAAAGTTGAACTTAATGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTGTTAGGGTGTTTGTCTTAACATTTAATTTTTAAAA  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAGGGTGTTTGTCTTAACATTTAATTTTTAAAA  350

seq1  ATGATTGCCTTTAGTTATTGTAACTAAAGTATATA  385
      ||  |||||||| |||||||||||||| |||||||
seq2  AT-TTTGCCTTTTGTTATTGTAACTAATGTATATA  384